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Properties
| Property Name | Value |
|---|
| Product | ribophorin ii family protein |
| Orig transcript id | gnl|cribi|Naga_100003g105.1842.mrna |
| Orig protein id | gnl|cribi|Naga_100003g105.1842 |
| Gene | RPN2 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:931101..933748 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna381 ID=rna381|Name=rna381|organism=Nannochloropsis gaditana|type=mRNA|length=690bp
ATGCAACCAGGGAATGAGCCACCCATTTGTCAGACATGTACGCACCCACA
CTATCCGTCAGAGAAATGTGCCGTATGCGGACACAGAGGGAAGGGGAAAA
CATACTTATTGGTAGCAAAGACAACAGCTCCATCCTGTGCAACCTTACAC
TTCAAGAGCTTCGATCAGACATTAGAAGCTCAGGCCTTCAAGAGCTTGTG
GGCCCTAGCCAGGATCATCCGGTCCAGAGTGTTTGTCGAGGAGGAAGGCA
TCGCGGAGGAGCTAGAATTTGACGTCCACGACGAAAGCAGTCACCACGTA
CTCGGTTTTCTGGGGGACGCACCGGTACTCTGTGCGCGCTGGCGGGTCGA
GCATCCAAATGGATGGGAAAACAGGGAACTCCTCAGCCCGAAGATGGGGG
GCACTGCGGGCCCCATGGCTGTCATCGACCGTTTGGCCGTGCTCAAACCT
TATCGAGGGCGCGGGTTTGCTGCGGAGGTGCTAAAAGTCTTAGGTGAGGA
TGCGGCGTCGGTGCTTCAGGGGACACGTTTGGGAAAAGAGGTGTTGAGAG
CAATAGCAGTGCTCATTCCAGTCGACTTGACTCCATGCTTGAGCGACAAG
CTGCGAGACCAGGGAGGGTTTCACGTGATGGGCAATCCATTCATGGACGC
GCGAAATAAGGCAATGCTGCGGATGGTGCGACAAGCATAA back to topprotein sequence of rna381 >rna381-protein ID=rna381-protein|Name=rna381|organism=Nannochloropsis gaditana|type=polypeptide|length=653bp
MASSSSPPVLAIFFLVALTLNQVTAQVDSFFSKADFERYHGIAKAALESR
SPETVFFGTKLSKALGGDISSVCTSAVGLISDNPDDLETVAYGMGALKEA
SCEVSLGAAETRAMKTLKSGWGAEGGSFRCKRLTLLADLALGGGKILENV
ETAVKNINKHRSEDGSVLSLPEGMSDESTDGTFQLLEIIAATKVTSKGIK
KTLERAADLLPGAEGSDGEVDAGADATLLSALATAVADAGGPGLSVTPAQ
GEALARILLKMKGTASAKGAYKVFAALRTLATKFPDAAPEALVLATPVIE
EGAVFRVECRNILGGEISGRSGGVELEKVVALGQAADSVTPPRLEGSGGA
FEATFTGSRVGVYELSLKVGGKDAVKRFLVVQAAASLMNIEVGVSPSRAH
LDGKLYQVPLRGGQVKASALEGEYVSVSFTVAAAAIPQQAFFKFTNLATN
SEILFAAKRSGIRSGAGSFVAVVSLADEVQAAFGHRSGEYQLSLVVGDVG
FDKPLEQDLGALNLTFSSKPPVSHALYRKPLLWESDTALSPLPEIHHQFR
QPERRPNAVLPAVFTFLVALVLTAFFRYLPRVGANLNGFPSRGMALFWNI
AWLVCLLMVIFLFTAYWMFLKGMTTLKLLFPLGVTTLLVGHRAFVGKVKA
GRS back to topmRNA from alignment at CM002455.1:931101..933748- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna381 ID=rna381|Name=rna381|organism=Nannochloropsis gaditana|type=mRNA|length=2648bp|location=Sequence derived from alignment at CM002455.1:931101..933748- (Nannochloropsis gaditana)
GACTCACGGGGGCTAGGCACCGCCTCATCACAGGGTATACTGCACATCGC
CTGGGCCAGGATCGCGCGCGACCGATCTCTTTTAGGATAAGTGCTCGCTT
GAAAGGCATGGCTTCTTCGTCGTCACCTCCCGTCCTCGCCATATTCTTCC
TGGTTGCCCTAACTTTGAATCAGGTCACCGCGCAAGTTGATTCATTCTTT
TCAAAGGCAGATTTTGAACGCTATCATGGTATTGCGAAAGGTATGTTTCC
TCGTGGTGGTCACATTTCGACCGCAGAATGATAGTTTTGAGCTTTAGAAA
TTAAGCTCTGGAAGCACTTGTGGGTGTTGGACTTCGTCTGTCTGTGTCCG
TTTGTTACACCGATCTAACTGGCACAAGGAAATGTACACCATCAGTGCTA
CATTTGGTGCATTCATAAAGGCAATTTGAAGCTTCATTGTCGCCTCTCGC
TCCTCCCAACTACTCAAAACAGCCGCACTCGAGAGCAGGAGTCCTGAAAC
TGTTTTCTTCGGAACTAAGTTGTCCAAGGCTCTCGGTGGGGACATCAGCT
CTGTATGCACCTCGGCCGTGGGACTTATATCGGACAATCCGGACGATCTA
GAGACAGTGGCTTACGGAATGGGCGCGCTGAAGGAAGCAAGCTGCGAAGT
TTCTCTGGGTGCAGCAGAAACACGAGCAATGAAGACGTTGAAATCCGGTT
GGGGCGCCGAGGGCGGATCCTTTCGATGCAAGCGCTTGACCTTACTGGCA
GACTTGGCGTTGGGAGGAGGGAAGATTTTGGAGAACGTGGAGACAGCCGT
TAAGAATATCAACAAGCACCGCTCTGAGGACGGATCCGTGCTATCCTTAC
CTGAAGGTATGTCTGATGAGAGCACAGATGGCACTTTCCAGCTTCTTGAG
ATTATTGCAGCCACGAAAGTAACATCGAAGGGTATCAAGAAGACGCTGGA
GCGGGCAGCAGATTTGCTACCGGGAGCCGAAGGCAGCGACGGCGAGGTGG
ACGCCGGCGCGGATGCCACCTTGCTCTCAGCGCTCGCCACGGCGGTTGCC
GATGCAGGCGGTCCGGGTTTGAGCGTGACGCCTGCACAGGGAGAGGCTCT
GGCTCGAATTTTGCTGAAAATGAAGGGGACGGCGTCGGCGAAAGGCGCGT
ACAAGGTGTTCGCGGCGCTGCGCACACTCGCGACGAAATTCCCTGACGCC
GCGCCAGAGGCCCTGGTGCTGGCCACGCCTGTCATTGAGGAGGGAGCCGT
GTTCCGAGTAGAGTGTCGCAACATATTGGGCGGTGAGATCTCTGGGCGGT
CTGGAGGAGTCGAGTTAGAGAAAGTGGTTGCGCTGGGGCAGGCGGCGGAC
TCGGTGACTCCTCCAAGGCTCGAAGGCTCAGGTGGCGCATTTGAAGCTAC
CTTTACCGGCTCCCGCGTGGGTGTGTACGAGCTTTCGCTGAAAGTTGGGG
GGAAGGATGCTGTGAAGCGCTTTTTGGTGGTTCAGGCTGCGGCCAGCCTC
ATGAATATCGAGGTCGGCGTCTCCCCTTCTCGCGCCCACCTTGACGGAAA
GCTCTATCAGGTCCCCTTGCGCGGAGGACAAGTCAAGGCTTCGGCCTTGG
AGGGCGAATACGTCTCAGTCTCTTTTACTGTTGCTGCTGCTGCGATACCG
CAGCAAGCGTTTTTCAAATTCACGAACTTGGCGACTAACAGCGAGATCCT
GTTTGCGGCCAAACGCAGCGGCATCCGGTCTGGCGCCGGGTCCTTCGTCG
CAGTGGTCAGCCTGGCGGACGAGGTACAAGCTGCCTTTGGGCATCGTTCA
GGCGAGTACCAGCTCTCCCTTGTTGTTGGAGACGTGGGTTTTGACAAGCC
ATTGGAACAAGACCTGGGGGCGCTCAACCTGACCTTCTCCTCCAAGCCCC
CTGTCTCGCACGCTCTTTATCGCAAGCCCCTCCTCTGGGAGTCGGACACG
GCACTCAGCCCTCTGCCAGAAATTCACCACCAGTTTCGCCAGCCCGAGCG
CCGGCCTAACGCGGTACTACCAGCAGTCTTCACCTTTCTTGTCGCTTTGG
TCCTGACCGCTTTTTTCCGCTATCTGCCACGCGTAGGGGCGAACCTGAAC
GGCTTTCCCTCACGGGGTATGGCTCTCTTCTGGAACATCGCCTGGCTGGT
TTGCCTTCTCATGGTGATTTTCCTCTTCACTGCTTATTGGATGTTCCTCA
AAGGCATGACAACGCTGAAGCTCTTATTCCCTCTAGGTGTTACGACACTG
CTGGTGGGTCATCGCGCGTTTGTGGGGAAAGTGAAGGCAGGGAGGTCGTA
AGATTTTGCTGCTACCACGTCGGAGGAGGGCGGATCATCCAATTAGAATA
ATAACATGGGTTACTTGAGTTGTTGGAACGAGTACCCTTTCGCAATGAAT
AGCAAGGACTGAAAAGAAGGGGGGGTGGTAGGAAAGGTTCACGAGGAAAA
AATAAAGCCTCCACCTTCGCCTCATTTTGTTGCCGCACAGCATCGAAGAC
ACTAATGCTTTCTTTCCTCAGCAAGGCAGCCCTTTGAAGCAGACCATAAG
CCTCAAAGCAGAGGGCCCGCATTTGAAAAAAACTTTGACTTGCGAGAAGG
GAAGCCTTGTCTATAATTCACACTTTCTCTTGCTACTGTGTCTACATG back to topCoding sequence (CDS) from alignment at CM002455.1:931101..933748- >rna381 ID=rna381|Name=rna381|organism=Nannochloropsis gaditana|type=CDS|length=3924bp|location=Sequence derived from alignment at CM002455.1:931101..933748- (Nannochloropsis gaditana)
CCGCACTCGAGAGCAGGAGTCCTGAAACTGTTTTCTTCGGAACTAAGTTG
TCCAAGGCTCTCGGTGGGGACATCAGCTCTGTATGCACCTCGGCCGTGGG
ACTTATATCGGACAATCCGGACGATCTAGAGACAGTGGCTTACGGAATGG
GCGCGCTGAAGGAAGCAAGCTGCGAAGTTTCTCTGGGTGCAGCAGAAACA
CGAGCAATGAAGACGTTGAAATCCGGTTGGGGCGCCGAGGGCGGATCCTT
TCGATGCAAGCGCTTGACCTTACTGGCAGACTTGGCGTTGGGAGGAGGGA
AGATTTTGGAGAACGTGGAGACAGCCGTTAAGAATATCAACAAGCACCGC
TCTGAGGACGGATCCGTGCTATCCTTACCTGAAGGTATGTCTGATGAGAG
CACAGATGGCACTTTCCAGCTTCTTGAGATTATTGCAGCCACGAAAGTAA
CATCGAAGGGTATCAAGAAGACGCTGGAGCGGGCAGCAGATTTGCTACCG
GGAGCCGAAGGCAGCGACGGCGAGGTGGACGCCGGCGCGGATGCCACCTT
GCTCTCAGCGCTCGCCACGGCGGTTGCCGATGCAGGCGGTCCGGGTTTGA
GCGTGACGCCTGCACAGGGAGAGGCTCTGGCTCGAATTTTGCTGAAAATG
AAGGGGACGGCGTCGGCGAAAGGCGCGTACAAGGTGTTCGCGGCGCTGCG
CACACTCGCGACGAAATTCCCTGACGCCGCGCCAGAGGCCCTGGTGCTGG
CCACGCCTGTCATTGAGGAGGGAGCCGTGTTCCGAGTAGAGTGTCGCAAC
ATATTGGGCGGTGAGATCTCTGGGCGGTCTGGAGGAGTCGAGTTAGAGAA
AGTGGTTGCGCTGGGGCAGGCGGCGGACTCGGTGACTCCTCCAAGGCTCG
AAGGCTCAGGTGGCGCATTTGAAGCTACCTTTACCGGCTCCCGCGTGGGT
GTGTACGAGCTTTCGCTGAAAGTTGGGGGGAAGGATGCTGTGAAGCGCTT
TTTGGTGGTTCAGGCTGCGGCCAGCCTCATGAATATCGAGGTCGGCGTCT
CCCCTTCTCGCGCCCACCTTGACGGAAAGCTCTATCAGGTCCCCTTGCGC
GGAGGACAAGTCAAGGCTTCGGCCTTGGAGGGCGAATACGTCTCAGTCTC
TTTTACTGTTGCTGCTGCTGCGATACCGCAGCAAGCGTTTTTCAAATTCA
CGAACTTGGCGACTAACAGCGAGATCCTGTTTGCGGCCAAACGCAGCGGC
ATCCGGTCTGGCGCCGGGTCCTTCGTCGCAGTGGTCAGCCTGGCGGACGA
GGTACAAGCTGCCTTTGGGCATCGTTCAGGCGAGTACCAGCTCTCCCTTG
TTGTTGGAGACGTGGGTTTTGACAAGCCATTGGAACAAGACCTGGGGGCG
CTCAACCTGACCTTCTCCTCCAAGCCCCCTGTCTCGCACGCTCTTTATCG
CAAGCCCCTCCTCTGGGAGTCGGACACGGCACTCAGCCCTCTGCCAGAAA
TTCACCACCAGTTTCGCCAGCCCGAGCGCCGGCCTAACGCGGTACTACCA
GCAGTCTTCACCTTTCTTGTCGCTTTGGTCCTGACCGCTTTTTTCCGCTA
TCTGCCACGCGTAGGGGCGAACCTGAACGGCTTTCCCTCACGGGGTATGG
CTCTCTTCTGGAACATCGCCTGGCTGGTTTGCCTTCTCATGGTGATTTTC
CTCTTCACTGCTTATTGGATGTTCCTCAAAGGCATGACAACGCTGAAGCT
CTTATTCCCTCTAGGTGTTACGACACTGCTGGTGGGTCATCGCGCGTTTG
TGGGGAAAGTGAAGGCAGGGAGGTCGTAAATGGCTTCTTCGTCGTCACCT
CCCGTCCTCGCCATATTCTTCCTGGTTGCCCTAACTTTGAATCAGGTCAC
CGCGCAAGTTGATTCATTCTTTTCAAAGGCAGATTTTGAACGCTATCATG
GTATTGCGAAAGCCGCACTCGAGAGCAGGAGTCCTGAAACTGTTTTCTTC
GGAACTAAGTTGTCCAAGGCTCTCGGTGGGGACATCAGCTCTGTATGCAC
CTCGGCCGTGGGACTTATATCGGACAATCCGGACGATCTAGAGACAGTGG
CTTACGGAATGGGCGCGCTGAAGGAAGCAAGCTGCGAAGTTTCTCTGGGT
GCAGCAGAAACACGAGCAATGAAGACGTTGAAATCCGGTTGGGGCGCCGA
GGGCGGATCCTTTCGATGCAAGCGCTTGACCTTACTGGCAGACTTGGCGT
TGGGAGGAGGGAAGATTTTGGAGAACGTGGAGACAGCCGTTAAGAATATC
AACAAGCACCGCTCTGAGGACGGATCCGTGCTATCCTTACCTGAAGGTAT
GTCTGATGAGAGCACAGATGGCACTTTCCAGCTTCTTGAGATTATTGCAG
CCACGAAAGTAACATCGAAGGGTATCAAGAAGACGCTGGAGCGGGCAGCA
GATTTGCTACCGGGAGCCGAAGGCAGCGACGGCGAGGTGGACGCCGGCGC
GGATGCCACCTTGCTCTCAGCGCTCGCCACGGCGGTTGCCGATGCAGGCG
GTCCGGGTTTGAGCGTGACGCCTGCACAGGGAGAGGCTCTGGCTCGAATT
TTGCTGAAAATGAAGGGGACGGCGTCGGCGAAAGGCGCGTACAAGGTGTT
CGCGGCGCTGCGCACACTCGCGACGAAATTCCCTGACGCCGCGCCAGAGG
CCCTGGTGCTGGCCACGCCTGTCATTGAGGAGGGAGCCGTGTTCCGAGTA
GAGTGTCGCAACATATTGGGCGGTGAGATCTCTGGGCGGTCTGGAGGAGT
CGAGTTAGAGAAAGTGGTTGCGCTGGGGCAGGCGGCGGACTCGGTGACTC
CTCCAAGGCTCGAAGGCTCAGGTGGCGCATTTGAAGCTACCTTTACCGGC
TCCCGCGTGGGTGTGTACGAGCTTTCGCTGAAAGTTGGGGGGAAGGATGC
TGTGAAGCGCTTTTTGGTGGTTCAGGCTGCGGCCAGCCTCATGAATATCG
AGGTCGGCGTCTCCCCTTCTCGCGCCCACCTTGACGGAAAGCTCTATCAG
GTCCCCTTGCGCGGAGGACAAGTCAAGGCTTCGGCCTTGGAGGGCGAATA
CGTCTCAGTCTCTTTTACTGTTGCTGCTGCTGCGATACCGCAGCAAGCGT
TTTTCAAATTCACGAACTTGGCGACTAACAGCGAGATCCTGTTTGCGGCC
AAACGCAGCGGCATCCGGTCTGGCGCCGGGTCCTTCGTCGCAGTGGTCAG
CCTGGCGGACGAGGTACAAGCTGCCTTTGGGCATCGTTCAGGCGAGTACC
AGCTCTCCCTTGTTGTTGGAGACGTGGGTTTTGACAAGCCATTGGAACAA
GACCTGGGGGCGCTCAACCTGACCTTCTCCTCCAAGCCCCCTGTCTCGCA
CGCTCTTTATCGCAAGCCCCTCCTCTGGGAGTCGGACACGGCACTCAGCC
CTCTGCCAGAAATTCACCACCAGTTTCGCCAGCCCGAGCGCCGGCCTAAC
GCGGTACTACCAGCAGTCTTCACCTTTCTTGTCGCTTTGGTCCTGACCGC
TTTTTTCCGCTATCTGCCACGCGTAGGGGCGAACCTGAACGGCTTTCCCT
CACGGGGTATGGCTCTCTTCTGGAACATCGCCTGGCTGGTTTGCCTTCTC
ATGGTGATTTTCCTCTTCACTGCTTATTGGATGTTCCTCAAAGGCATGAC
AACGCTGAAGCTCTTATTCCCTCTAGGTGTTACGACACTGCTGGTGGGTC
ATCGCGCGTTTGTGGGGAAAGTGAAGGCAGGGAGGTCGTAAATGGCTTCT
TCGTCGTCACCTCCCGTCCTCGCCATATTCTTCCTGGTTGCCCTAACTTT
GAATCAGGTCACCGCGCAAGTTGATTCATTCTTTTCAAAGGCAGATTTTG
AACGCTATCATGGTATTGCGAAAG back to top
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