rna3801, rna3801 (mRNA) Nannochloropsis gaditana

Overview
Namerna3801
Unique Namerna3801
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2794
Alignment locationCM002462.1:86212..87587 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100596g1.4396.mrna
Orig protein idgnl|cribi|Naga_100596g1.4396
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:86212..87587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100596g1gene3659Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26883.1cds3792Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3801rna3801-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3801 ID=rna3801|Name=rna3801|organism=Nannochloropsis gaditana|type=mRNA|length=2794bp
AGGCACACGTTGGATTTACAACGAGGTCGTAGTATCAAACGAGAACTGGC
ACAGTAGCCTATGGGAGGACGGGACGCCAATTTTGGGCGCTTGCCTCTCC
ACGTCGTGTGTGAGATTTGGCACGTAACTCACCAAGGCCATAGGGCTTTA
TTAATCCTGCAGTAGGTAACAGGTAAAAGCGAGCCACCGATCAACGTACT
CGGTACCCACGCAGTTGTATCTGTCTCCCGTGTACGCAAGCCAGCTATTG
TTGCGACGACGCCTGCATTTGACCTTTGACCCTAACCTTTGAACTTTCGT
CCTGCCGCTTCATCCCACAGAGAGCAATCGGGGATATCGGACCTTTCCCC
CTCTAATAAGCCTTCGCCACCAGATTATCACGCCATGAATACGTGAGAAA
GATGAAGGAACAAATTTCACGATAGTAGACTTGTGCATCAACGCGGGCCT
GCCTGTTCGATGTCCAAGCTTACTCCTCGCCCTCATCTGTGCATTAATCG
CTGACTCTCCTACCTCATGTCCGATATCTAGCGTTTCCCAAAAGAAGTGC
CCCGCATACCACAAATGGATGGCTGGGTATTGCGAAAGGATTGTCTCCTC
ACTGGCGTCGTCAGCGGCATTGTCTTCCTCCTTGCTTTGTTCCTGCTTGT
GGTCGTCGTGTCCACCCCCACCCGTGCCGGGAACACCAGCCGTCTTTGTT
CCCTCCTGCATTGTGGCCTGACGCTCTTCTCCTCGAGTCTTGGCTTGGTG
ACCGCCGCCTTGAATCTGGTGGACGCCAATTTTGTCTTTGCATGCCTCGC
CACAATCATTGCCGTCTCCCAAGCCGTGGATGGCTACCAGACATGGGAGC
GTTATCGCATCGTCTACGAGCATGAGGGACGGCGTCGGCCTCCGCGGCAT
ACTTACATGGCGTATGCCTACATTTGTGTCTTTTTTTGCCTGCCCTTTTT
GATCACGTCCGTGTACTGGGCGACTCAAGAGCTGGGCGACGGGGAAGCAC
AACCATCCTCCCCGTCTGCAAACCCCTTTGCGTACATCCTCTTCTTCCTC
TACGCACTCTCCGTCCCCGGCCGCTTGTGGTGGGACTCGAGCTTGGGTTG
TGCTTTCATCAACCGGATCTATGAGCTTCGTGTCGCCATTCTGGCGTCCC
GGGGGTCGGGGGAAAAAGCATTGGCGTGTCAGCAGGACGAGGTCCTTGTC
TCTCTGGCACGACGCGCTCTTGTGTACTTGGGCATCTCCTTCACCGTGAA
TATCTTAATTCACATCCCTTTACTGGCCTTGATTCCCTTCGTGAACGTGT
ACACAACGGTCTTCAACCTGTGCTTTGCATTGGCCACGCACTTCTGCTTT
AATTGCCGGGGCCCGCCTATCGACGTGCTCGGCTTTCCAGTTCGCGCCGT
TTTGATCCTCTCTCGAGTGGTCCGGGATGTGTGGCGTCAGGGAAAGTGTT
GGCGACCCAGAGGGGATCGGGCTCGACCGGGGCAGGGAGAGGAGAGGGCA
GCAAGGAGGGAGCGTAGGAGTCGCACGGAGGGGCAAGAGGCAGGGAGGGA
GCAAGTCTCCCAAGGGGGACGCTCGTCCGACCAGGCATGGGAAGGGATGG
AAAGCGAGCCGTTCAGCTCGTTCACGCCGGCGTCGCGCGTCAGGGAGAGA
GGGACGGACGCGGCGCACACCCGCAGCATGGGCCTCTCCTTGCTCTCGTC
CGGACCCTCCCTGCTCGAGTCGTCGGGAGGTTTCGCGCCATTTTTCCAGG
GCCGTGCGGGCCCAGGTCCGTCTTACTCGTCAGGGGCTGGAAATAGACCA
CAGGAAGGTTGCGGGGTGGAGGTGCTGGCAGACAATGTGGAGGGAGAAAA
GCCTAGGGCGCAGGTGCAGCAGGATGGTGGGGTCTAGGTAGTGGCAGGGG
AGGGAGCGAAAAGGAGGAGAGCAGAGGGGAAAAGGGGAAAGAAACGAGTT
CAGCCCCAGTACGAGGGTGGAAAGGAAGGAAAGGAATGGGGAGGACGGGG
CAAGATAGGTTGGCAAAGAAAGTTTAGGTGGCGGGTAGGCGGGGCACGCC
AAGGCGAGCACAGCGGAGCAGCAGCCACGAGTGGAAGAAAAAGGACGCGG
AGGAGGAAGACGAGAGAAAGCGAGGGTAGGAAAGATGTTGTAAGAATAAA
AAAGGGGACCAGGAGCAAAGAAGGGAGGGGAGTGGCGGCCATGAATGGCC
TGGATGGAGCTCTGGGCTCTGAACCTCCACGGTCCCCACCGATCAGAAAA
GTCAGGACCGCGATAATAACTCTTTTGTCCGGGGGGTTATGCCGTGACCG
GTGTACCCTTAGCATTGAGAGGGGTCGGGCAGCCTGCCTCGGGGTGGGGG
CGGGCACCAAGTTGTGGAAAAGGGGGGGGAAGTGGGGCACAAGGACGGGA
GGGCGAAGGAAGTTGGATCTCGGGAACAAGAGGGGGTATCTTTTGAATGT
ACGAATACATTCATACGTGTATATAGAATGCATTGGGCTTCACTGCTCGT
GAACGCAACGCCATGGCAGACGCGACCTGCCCCGCCATGTGCATATTCAA
GCCCAGCGCGCCCTTTTGTACCAAGGATCGTGAGCACGGCAAAGACGATT
AGGTGACTGTTGTTTTGTAGATTTGAAAGCAGGGGCGTACCGCGTGCCGG
ATGTGCGGCGTGGAGCACCCAGGGCTCCGGGCAGTAACAGGCAAAGGCCC
GACGGGTTAGAGCGATCGGGCCTGCACGCGAGCCACGCGCCCAAAGCAAT
AAATATATATATACGTGAAAGCAACTGATCACGTACACCAGTCA
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protein sequence of rna3801

>rna3801-protein ID=rna3801-protein|Name=rna3801|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MQLKTAADSAECLNVGSNGDNLQGGWQRASKAAAAAAAAVSGDSLVSMMD
SMSMAPRPPSLPLSLPPASLPVGQSDMKEERPAQQSQPASVLVAAAKAYP
EPPRANGRHPTDPTYHHGRHHPPPLAGTSPPPPTDLLQLGSTPPPVPAKL
LHPFDPLFLPPSLPPSLPTTSIPSQPPLALTASVPPLAAHVSRPMPQNPS
SFPSSLPPSLPADLSHMGRGMIPPMQPRTIIPAALDEGWGSGEPSSAFDF
IGRGRGGGGGGGETKGGEEAFSFVKEAMDRSRSGGRDG
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mRNA from alignment at CM002462.1:86212..87587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3801 ID=rna3801|Name=rna3801|organism=Nannochloropsis gaditana|type=mRNA|length=1376bp|location=Sequence derived from alignment at CM002462.1:86212..87587- (Nannochloropsis gaditana)
TTGAAGAGGCAACGGAATGCGAGGGAGAGGGGAAGGAGAGGGTCGAAAGT
GAAGGAAGGGGGGGGGGCAAAACTTGTTTGCAGACATGCAATTGAAAACG
GCGGCAGATTCGGCCGAGTGTCTAAATGTGGGTTCCAACGGCGACAACTT
GCAGGGAGGCTGGCAGCGGGCGTCAAAGGCAGCAGCTGCGGCCGCCGCAG
CCGTTTCAGGGGACTCTCTTGTGTCCATGATGGACAGCATGAGCATGGCA
CCCCGCCCTCCCTCCCTCCCTCTTTCCCTTCCTCCTGCATCATTACCTGT
CGGGCAGTCGGACATGAAGGAAGAAAGGCCGGCCCAGCAATCCCAGCCCG
CCTCGGTTTTAGTGGCGGCGGCAAAAGCATACCCGGAGCCCCCGAGGGCA
AATGGGCGCCACCCTACCGACCCGACCTACCACCATGGTCGCCACCATCC
TCCTCCCCTAGCGGGGACGTCTCCACCTCCTCCCACGGATCTCTTGCAGC
TGGGCAGCACGCCTCCCCCCGTGCCGGCCAAACTGCTGCATCCCTTCGAC
CCTCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCACCACCTCCAT
TCCCTCCCAGCCCCCCTTGGCTCTGACCGCCTCCGTTCCTCCACTCGCCG
CCCACGTGAGTCGGCCCATGCCTCAGAATCCTTCCTCGTTCCCCTCCTCC
CTCCCACCCTCCCTGCCAGCCGACCTGTCACACATGGGCAGAGGCATGAT
CCCGCCCATGCAACCGCGGACCATCATCCCAGCTGCTCTTGACGAGGGCT
GGGGAAGTGGAGAGCCGAGCAGCGCCTTTGACTTCATAGGGAGAGGGCGA
GGGGGAGGAGGAGGCGGTGGCGAAACGAAAGGAGGGGAGGAAGCCTTTTC
CTTCGTGAAGGAAGCGATGGACAGGAGCCGGAGTGGAGGGAGGGACGGAT
GAGGAGGGAGGTCTTGGGGCAGGAAGGGGAAAAGGATAATGTTGCTGTGC
TGGTGCATTGATGTACATGGGGAAGGCGATGGAAAGCGGGAGGTCGGTCA
GAAGCCTGTACACAGAGAAATAAAAAGTCATGTTGAGTGCTGACGACCTA
GGGGACGAGGGAGGGACTGGCCGCGTGGTGAAGGAAAAGAAGAGGGAGAG
GACGAGGGAGAGGGAGGGAAAAGAAAGGAATCGATGCCTTGGAAAAGTAA
ATTGAGCAAGAGAGGTGTGACGTCAATGGCAGTGGGCGGGACACAGGAAA
AAGGGTCAGAGGGTGGAGGAGATTCTCGATGGAAAAAGGCGCGAAAAGTC
AGACGCGTCACAAGCGCCAAGCCAACCATAAAGCACCCTGGATGCCCGCG
TGAATAATGACTGGTGTACGTGATCA
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Coding sequence (CDS) from alignment at CM002462.1:86212..87587-

>rna3801 ID=rna3801|Name=rna3801|organism=Nannochloropsis gaditana|type=CDS|length=867bp|location=Sequence derived from alignment at CM002462.1:86212..87587- (Nannochloropsis gaditana)
ATGCAATTGAAAACGGCGGCAGATTCGGCCGAGTGTCTAAATGTGGGTTC
CAACGGCGACAACTTGCAGGGAGGCTGGCAGCGGGCGTCAAAGGCAGCAG
CTGCGGCCGCCGCAGCCGTTTCAGGGGACTCTCTTGTGTCCATGATGGAC
AGCATGAGCATGGCACCCCGCCCTCCCTCCCTCCCTCTTTCCCTTCCTCC
TGCATCATTACCTGTCGGGCAGTCGGACATGAAGGAAGAAAGGCCGGCCC
AGCAATCCCAGCCCGCCTCGGTTTTAGTGGCGGCGGCAAAAGCATACCCG
GAGCCCCCGAGGGCAAATGGGCGCCACCCTACCGACCCGACCTACCACCA
TGGTCGCCACCATCCTCCTCCCCTAGCGGGGACGTCTCCACCTCCTCCCA
CGGATCTCTTGCAGCTGGGCAGCACGCCTCCCCCCGTGCCGGCCAAACTG
CTGCATCCCTTCGACCCTCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCACCACCTCCATTCCCTCCCAGCCCCCCTTGGCTCTGACCGCCTCCG
TTCCTCCACTCGCCGCCCACGTGAGTCGGCCCATGCCTCAGAATCCTTCC
TCGTTCCCCTCCTCCCTCCCACCCTCCCTGCCAGCCGACCTGTCACACAT
GGGCAGAGGCATGATCCCGCCCATGCAACCGCGGACCATCATCCCAGCTG
CTCTTGACGAGGGCTGGGGAAGTGGAGAGCCGAGCAGCGCCTTTGACTTC
ATAGGGAGAGGGCGAGGGGGAGGAGGAGGCGGTGGCGAAACGAAAGGAGG
GGAGGAAGCCTTTTCCTTCGTGAAGGAAGCGATGGACAGGAGCCGGAGTG
GAGGGAGGGACGGATGA
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Synonyms
Publications