rna380, rna380 (mRNA) Nannochloropsis gaditana

Overview
Namerna380
Unique Namerna380
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2148
Alignment locationCM002455.1:930112..930902 +

Link to JBrowse

Properties
Property NameValue
Productgcn5-related n-acetyltransferase
Orig transcript idgnl|cribi|Naga_100003g106.1788.mrna
Orig protein idgnl|cribi|Naga_100003g106.1788
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:930112..930902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g106gene366Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna380rna380-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30271.1cds380Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna380 ID=rna380|Name=rna380|organism=Nannochloropsis gaditana|type=mRNA|length=2148bp
GGTGGCTCATTCCCTGGTTGCATGTGCGCAAGATCAGAGCGTGGTGCTTG
CTGGCCTAACCTTGTGCAGGAGGGGAGCATGGGAGGGACTGAGCGTTTGA
TTACGCCTTAAATCTTTGAATGTCCTCTTGCATGCCTAGACTACCCGCTA
TGGCGATCTTTTCACATGACGTGAACGCCTCGTTCAGGAGAGCGGGCAAG
TCGCTGACCTACAGCGCCTCTGTTGGGTGTTCCCAGGTTTATGTTCACCT
GCCTCGCCCCGCCGACCCCTTTCGCTCGCCCGCCGGCCGCTGTCTGACTT
TGCATCCAGATCCAGCCACCTGTCCTTATTTCACGGTCCCGCGCACTCGT
TCGCTTTCCACAAAACCGTATGATTATCGGTAAATTGAGGCTCTCTATCT
TCAGTGGTTTTCCGCTTCGTGAGCAATCATTACCTCGTGCTGGACTTGCT
GACGAGGAATCAAAACCGCTAACGAACGTTTGCCCTCTCTTGAGTTTTAC
CCTCGTAGCCATCTCATGCGTCGCGATTCACACAAGCACAGTAAATCTCA
CTCCTAATCTGCAAAGAAAGGTCCGATCTCGGTGGTAGGTTCACGGAAGT
CTTCGAATTTGCTTTTGACACTATGGCCCTCAGTCGCGCACGCATCATAG
CTATGACAACTAGCAGAGCCATCAGGGGGGTTCCTGGTTGCATTCGGGAC
CCTTGCAGCAGTAGCATCACTGGACAAAACGTTACGCGCACGTGCATCCG
GGAGCTACATGCATCTGGGCGGGCATCGAAGAGCACGGAAGTCACGAAGG
CTGCAGGCGGGGTAGACCAGCTTCTCAAGACTAAGAACGGCGTTGAATAT
GTAGTATCCAAGGTGGACGATCTCGTCAATTGGGCCCGCAAGGGTTCTTT
GTGGCCTATGACTTTTGGTCTCGCTTGCTGTGCGGTGGAGATGATGCATT
CCGCTGCCGCACGATACGACATGGAGCGCTTTGGGATGGTGTTCCGAGCC
TCTCCCCGACAGTCGGACGTCATGATTGTGGCGGGAACGTTGACCAACAA
GATGGCGCCGGCGCTCCGAAAGGTATATGATCAGATGCCTGAACCGCGAT
GGGTTGTGTCAATGGGCTCCTGCGCCAACGGGGGTGGGTACTACCATTAC
TCGTACGCCGTCGTCCGGGGTTGCGATCGCATCGTGCCTGTCGACATCTA
TGTGCCTGGGTGCCCTCCAACCGCTGAGGCTTTGCTGTACGGCATGCTTC
AGCTTCAGAAAAAGGTTAAAGGCAACAAAGGGCTGCTCCTCAAACTCCGC
AAATAGAACGCTGAGAGACACATTGGAAATGATTGTGACATAAGGAAGAA
GTATTGCCAGGAAGGACAGCGGAGTGTCGAAATGGGGATAGTGTTTTGGT
CCCTAGAATGTTGCAGGGCGTCGGAAAGTCTGGAACAGGTTCTACCAAAA
ACGAACGTCAGCGTACTGGGGCTGAGCGCTGTAAGAAATCAACCATGGAA
TATCCTTGTTTCTTAGTATGATAATTCCAGAATCAGGAGACGATAAGAGA
ATGACACTACATTATGCCGATGTTGCGCCCGTCAGTTTGGGAAAGGCGAG
TCCGTGAAACTTTTTTTAAGAGCCATAACCCGTTTTTTTTTCTTGCGTCC
ACTTCACATCTCGATAGATTGTTCATATATGTGAACTTCTGTGATCCTTT
TCCACCCCTCTAAAGGCGTTTCATGCCCTACAATAGATGACGTTATTAAT
AGACGTTATTACTTAAAGATAAGATAATTCAAGTCACTACCTGCTCCTAA
ATATCGGCGCTTCACAGACCAGTGAGCTCGCTTTTAAGCAGACGAAATTG
TGCGCTGCCCCTTCAGGTTGAGCCTGAAATGCTATTAAAACTTCTATGGT
GCGTTCATCTTTTAATAAAATCAAGGGAGGCGCTTCATGTGTCAATGCGT
CAGCGTCCTTCAACTCTAAGTCATCACAAAGCTTCCTGTCTCCACCAAAT
GCTGCTTGCTCCAAGTTTCCATACTTCGCGAGTATTTTTCGGTTATATTT
CGTATGCAATAACGTCCGCATAATTGTCACAGCTTAGTTCCCATGCCACA
AATAGGCTGTGCCTACCTCGCGAAAGGGAATAAATCTCTCCAATATCG
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protein sequence of rna380

>rna380-protein ID=rna380-protein|Name=rna380|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MQPGNEPPICQTCTHPHYPSEKCAVCGHRGKGKTYLLVAKTTAPSCATLH
FKSFDQTLEAQAFKSLWALARIIRSRVFVEEEGIAEELEFDVHDESSHHV
LGFLGDAPVLCARWRVEHPNGWENRELLSPKMGGTAGPMAVIDRLAVLKP
YRGRGFAAEVLKVLGEDAASVLQGTRLGKEVLRAIAVLIPVDLTPCLSDK
LRDQGGFHVMGNPFMDARNKAMLRMVRQA
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mRNA from alignment at CM002455.1:930112..930902+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna380 ID=rna380|Name=rna380|organism=Nannochloropsis gaditana|type=mRNA|length=791bp|location=Sequence derived from alignment at CM002455.1:930112..930902+ (Nannochloropsis gaditana)
ATGCAACCAGGGAATGAGCCACCCATTTGTCAGACATGTACGCACCCACA
CTATCCGGTAAGGTATTTTGAAGGGAAGTTTGGTGATGCATTTTTGTGAG
CCTTCTGCTTTTGGTCGGCTTTCGAGGAGGTTACCTAAAATAAAAATTTC
CATCCCAGTCAGAGAAATGTGCCGTATGCGGAcacagagggaaggggaaa
acatACTTATTGGTAGCAAAGACAACAGCTCCATCCTGTGCAACCTTACA
CTTCAAGAGCTTCGATCAGACATTAGAAGCTCAGGCCTTCAAGAGCTTGT
GGGCCCTAGCCAGGATCATCCGGTCCAGAGTgtttgtcgaggaggaaggc
atcgCGGAGGAGCTAGAATTTGACGTCCACGACGAAAGCAGTCACCACGT
ACTCGGTTTTCTGGGGGACGCACCGGTACTCTGTGCGCGCTGGCGGGTCG
AGCATCCAAATGGATGGGAAAACAGGGAACTCCTCAGCCCGAAGATGGGG
GGCACTGCGGGCCCCATGGCTGTCATCGACCGTTTGGCCGTGCTCAAACC
TTATCGAGGGCGCGGGTTTGCTGCGGAGGTGCTAAAAGTCTTAGGTGAGG
ATGCGGCGTCGGTGCTTCAGGGGACACGTTTGGGAAAAGAGGTGTTGAGA
GCAATAGCAGTGCTCATTCCAGTCGACTTGACTCCATGCTTGAGCGACAA
GCTGCGAGACCAGGGAGGGTTTCACGTGATGGGCAATCCATTCATGGACG
CGCGAAATAAGGCAATGCTGCGGATGGTGCGACAAGCATAA
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Coding sequence (CDS) from alignment at CM002455.1:930112..930902+

>rna380 ID=rna380|Name=rna380|organism=Nannochloropsis gaditana|type=CDS|length=1380bp|location=Sequence derived from alignment at CM002455.1:930112..930902+ (Nannochloropsis gaditana)
ATGCAACCAGGGAATGAGCCACCCATTTGTCAGACATGTACGCACCCACA
CTATCCGTCAGAGAAATGTGCCGTATGCGGAcacagagggaaggggaaaa
catACTTATTGGTAGCAAAGACAACAGCTCCATCCTGTGCAACCTTACAC
TTCAAGAGCTTCGATCAGACATTAGAAGCTCAGGCCTTCAAGAGCTTGTG
GGCCCTAGCCAGGATCATCCGGTCCAGAGTgtttgtcgaggaggaaggca
tcgCGGAGGAGCTAGAATTTGACGTCCACGACGAAAGCAGTCACCACGTA
CTCGGTTTTCTGGGGGACGCACCGGTACTCTGTGCGCGCTGGCGGGTCGA
GCATCCAAATGGATGGGAAAACAGGGAACTCCTCAGCCCGAAGATGGGGG
GCACTGCGGGCCCCATGGCTGTCATCGACCGTTTGGCCGTGCTCAAACCT
TATCGAGGGCGCGGGTTTGCTGCGGAGGTGCTAAAAGTCTTAGGTGAGGA
TGCGGCGTCGGTGCTTCAGGGGACACGTTTGGGAAAAGAGGTGTTGAGAG
CAATAGCAGTGCTCATTCCAGTCGACTTGACTCCATGCTTGAGCGACAAG
CTGCGAGACCAGGGAGGGTTTCACGTGATGGGCAATCCATTCATGGACGC
GCGAAATAAGGCAATGCTGCGGATGGTGCGACAAGCATAAATGCAACCAG
GGAATGAGCCACCCATTTGTCAGACATGTACGCACCCACACTATCCGTCA
GAGAAATGTGCCGTATGCGGAcacagagggaaggggaaaacatACTTATT
GGTAGCAAAGACAACAGCTCCATCCTGTGCAACCTTACACTTCAAGAGCT
TCGATCAGACATTAGAAGCTCAGGCCTTCAAGAGCTTGTGGGCCCTAGCC
AGGATCATCCGGTCCAGAGTgtttgtcgaggaggaaggcatcgCGGAGGA
GCTAGAATTTGACGTCCACGACGAAAGCAGTCACCACGTACTCGGTTTTC
TGGGGGACGCACCGGTACTCTGTGCGCGCTGGCGGGTCGAGCATCCAAAT
GGATGGGAAAACAGGGAACTCCTCAGCCCGAAGATGGGGGGCACTGCGGG
CCCCATGGCTGTCATCGACCGTTTGGCCGTGCTCAAACCTTATCGAGGGC
GCGGGTTTGCTGCGGAGGTGCTAAAAGTCTTAGGTGAGGATGCGGCGTCG
GTGCTTCAGGGGACACGTTTGGGAAAAGAGGTGTTGAGAGCAATAGCAGT
GCTCATTCCAGTCGACTTGACTCCATGCTTGAGCGACAAGCTGCGAGACC
AGGGAGGGTTTCACGTGATGGGCAATCCATTCATGGACGCGCGAAATAAG
GCAATGCTGCGGATGGTGCGACAAGCATAA
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Synonyms
Publications