rna3798, rna3798 (mRNA) Nannochloropsis gaditana

Overview
Namerna3798
Unique Namerna3798
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length474
Alignment locationCM002462.1:77603..78531 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101634g1.118.mrna
Orig protein idgnl|cribi|Naga_101634g1.118
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:77603..78531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101634g1gene3656Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3798rna3798-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26884.1cds3789Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3798 ID=rna3798|Name=rna3798|organism=Nannochloropsis gaditana|type=mRNA|length=474bp
ATGTTCCCCTCTCCGCCCACAGGGCCGTCGATCCTGACTCCTCCAGGAAA
CATGACAAGCCTTATACATGAAAAGCATTTGGATGCTCTGGTCTCCTTCT
TTCAAAGCTGGGTGCCACTGGCGGACAAGACGGTGTACCTGACCGTGCCC
GGGATGGACCAGGCCCTAGCCCCGCTGGGCGAGACTTTGGGCTTCGATAT
CGGGATGCTGAAGGTAATCCATGTTCCTTGCCTATCCGCTCTCGGGCATC
CTCACCCTTTTGCCATCCACCAACGCCAAACACGCTTTCTCCCTCCTGCT
GGGACTGTGGTACGCCCAAGAGATATTTGGAAATCAGTGGATCCATTCTT
TCCTGTCCGCAGCCATCTCTTACCTCATCATCTGCTTCGGCCCACGCAAG
CACATCGCCACCCTAGTCTTCCTCTTCACCATGACCTACATGAGCCTCAG
CCACCTCTACCGCCTTTACGTTGA
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protein sequence of rna3798

>rna3798-protein ID=rna3798-protein|Name=rna3798|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MGSGLGGVEERELLGPCGDGRCLPFNLDLTHTAQGEGGWEEGMKGKEGGR
EGGREGGREGGDDCSKEGQR
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mRNA from alignment at CM002462.1:77603..78531+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3798 ID=rna3798|Name=rna3798|organism=Nannochloropsis gaditana|type=mRNA|length=929bp|location=Sequence derived from alignment at CM002462.1:77603..78531+ (Nannochloropsis gaditana)
CAGCTactacctcttcttcttctccgtcgcCTTCGTTCAGTCCGTGCAGC
GGGCTTGGCAGAAGAAAGTCTCGCCCTACTTCGCCTCCGTCCCAAGGCTG
TataccctcctctccatcgccttcttctccgcctaCATCAACTACTTTTC
CATCGTGTTCCAGGTCGCCGAGGCGGGCGAGAGACAGGGGGGGTCATGCC
ATGGGAAACATCGGAAACCGCATATCCACgatgctccctccctccctccc
tccctccctccctccctccctccttccctcaggtCCTCGCATGGGATCGG
GCCTTGGCGGTGTGGAAGAGCGCGAACTACTGGGGCCATGCGGCGACGgc
cgctgccttcctttTAACCTCGATCTTACCCACACCgcccaaggagaagg
gggctgGGAAGAAGgcatgaaagggaaggagggagggagggagggaggga
gggagggagggagggagggcggggacgactGTAGCAAGGAAGGGCAAAGG
TAGATGGGTAAAGGAGACAAAAACGTTGGAAAAATGTGAGAGACTCACAC
TTTCAGAGGAATGTTTGTTTGGTGACTGCAGTgaaagatggaggggaaag
aggctcTTGATGTAGAAGGgacggtagggagggagggagggagggagggt
gggagggagggagaaggggaggaggtcgtgggTGAGAAAAATCCTGCGGA
TGCTGTCGAGAGGCACTGACATGCGATGATTGAATCGTGCGAGTCGATgc
aaaagaaggaaagaccACCCCGAGCGCCGACCATGGGCCCATATCCATAG
GGGCAGTCGGTCAAACGAGGAATGTCCTGGAAGCTTCTTGCGTCGGAGTC
GACTGCAGGCGTCCCAGCCATGCTCGTTTCGCACATAATGGCAATTTGCA
AAAGTCCTGCATGCATcagaaaggggagg
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Coding sequence (CDS) from alignment at CM002462.1:77603..78531+

>rna3798 ID=rna3798|Name=rna3798|organism=Nannochloropsis gaditana|type=CDS|length=213bp|location=Sequence derived from alignment at CM002462.1:77603..78531+ (Nannochloropsis gaditana)
ATGGGATCGGGCCTTGGCGGTGTGGAAGAGCGCGAACTACTGGGGCCATG
CGGCGACGgccgctgccttcctttTAACCTCGATCTTACCCACACCgccc
aaggagaagggggctgGGAAGAAGgcatgaaagggaaggagggagggagg
gagggagggagggagggagggagggagggcggggacgactGTAGCAAGGA
AGGGCAAAGGTAG
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Synonyms
Publications