rna3787, rna3787 (mRNA) Nannochloropsis gaditana

Overview
Namerna3787
Unique Namerna3787
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1948
Alignment locationCM002462.1:43524..44321 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100103g3.7046.mrna
Orig protein idgnl|cribi|Naga_100103g3.7046
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:43524..44321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100103g3gene3645Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3787rna3787-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26909.1cds3778Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3787 ID=rna3787|Name=rna3787|organism=Nannochloropsis gaditana|type=mRNA|length=1948bp
CTGCCAGTTTGCTTCTACAGCCATGGCAAACAATGCGATAGAATGTGTCC
ACCCTCGCTTACAGGAGTGAATTGATCGGGTTCTGTTGAGTCTGGAGTTG
AATGTGTGACGAAGGAAGTTTTTTGTTCGTCTTGTTCTCCATACTGGCAC
GCGGACAGAACCCCCCCCTGAAAGAACATGTTGAACGTTTGCTCGTGGCT
TTTTTTCTATCAAAACATGTGACCTTACTCTTGAGATAAAGTCATACATG
GATGTAAGCCAAGTTAGAAGAATAAAAATATCGACTTCACTGTACATTAA
TGTAAATCTAGTTCTTGAGAACGCGGTTCCTGGCGTCTAAAGTATAGGCT
GAGACACGTGGGTAAGGAGGTCATAGCAAGTAGCTACAACGTTGGAAATG
TAACCTTTTATGTTTCTCACTCCTTTAATGAACGCGGCAGCAAAAAAATA
TTCAGATTCACAATTACACATATTCTACCGTACCACATGCAGGAAACGCA
TCGGGTAAAGCCCTGGATGGTCGCAGGCTTTTCACTGTCATCTATTGCCT
TTCCCAGAGATAGTTACCGTTTTAACATACGCCGAGGCCGTCACGCTACC
GTGGTCTCATTTCCTCTGTTCGTTCGGGCTTCTGTTGCGATGTGTGCGTG
GTTTTGTTCCGGTCGCAGTAATACAGAGCTGGTGCACCGTTTACGTGCCT
CCAATGTGATAACCAGCGAGCGTGTCAAAGAGGTTATGCTTCGTGTTGAC
CGGGGAAATTACGCGCCAAATTTTGCCTACGACGATTCCCCGCAATACCT
TGGTTACGAGCAAACAATCTCTGCCCCACATATGCACGCCCATGCACTGG
AGCTATTAAAAGAAAGACTGGTGCCTGGAGCGACGGTGTTGGATGTGGGC
TGTGGCTCCGGGTATTTGACGGCGGCCATGGCCCGTATGGTGGAGCCGAA
GGGGAGAGTGGTTGGCATCGACATCGTCAAGCCACTCGTTAGCCTGGCAA
AGAACAACATAGAGAAGGCAGATGATGACTTGCTGACGAAAGGCGTGGTC
ACGCTGGAATGCAAGACGGGGTGGGAAGGCGACAAGGAGAAGGGTCCGTA
CGACGCGATTCACGTCGGCGCTGCTGCTTCCTCAGTGCCCCGCTCGCTTG
TCGAACAGCTGAAGGTTGGCGGCATCATGATCATTCCGGTAGGGCCTGAA
GGTGGGAATCAGGTACTCTGCCGGGTGCAAAAGATCAAGGATCAAGGTCC
TATCGAGGAGACATTTGTAGCGCAGGAGCTGCTGGGTGTGCGGTACGTCC
CTCTGGTTCGTCAGAGTCCTCATGGCTAAGCGCTCAAGACGTTTTTCAGC
TTATAGGGTGGAAGGAGAAAGGAGTTGGGAGGGCGAACGTTGGAAAATGT
CGGTAGTCCCATTGCGAACACATTGTGGTCGGAGAGCAAATTTGGTATGC
ACGGAGGCAAGACACGGAAAGGAAGAGACAAAGACAAGGGACCAGTCTTC
TGAAAAGGATGATTTTGAGATTCACGTGAAGCTAGATCGACCAGGAGTGG
GAAGGAGAAGAGGTAGTAGGTCCGTTGACGGGACGTGAGGATGACGTGAA
AAGAAGAAAAGAATGTCTGTGCTTGATTAGCGTTACGTATTGAATACTAG
CAATTAAAATATTTTTTTCAGGAAGAGTGGATTACAATACGAAAAGGAGA
GAGAAAATTCAAGTCTGCTTCGATCTACATGTCACGCAAAGCGAAAAGAT
TTTTGTTACGTGTAATGAGACTATAAGAGCCCTGACAGAGAATTCGTAGC
AAAAAACTGATAAAAATGTATTCAGTCTCTGATTTGTGTCTCTTTCAGGT
ACTATCGCGGTCCAAATCTCTATTGTAAGCCGCTAAACTCCACGTCGTCG
AACCATACCTGTTCGAGCAAGTGTGACTCCCGCAGTGCATGCACAACC
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protein sequence of rna3787

>rna3787-protein ID=rna3787-protein|Name=rna3787|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MDDTKMDINIGLHEDLLSQYDILSRELSPRLRRGLNDVYEGLEWMITLGA
LGVGFYSASRLLYATYWVLDCRSRKSTRWRKQVLALSFGSVMRLTIEIWT
AIVPERDTNQRLNTFLSVFCYEFSVRALIVSLHVTKIFSLCVTCRSKQT
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mRNA from alignment at CM002462.1:43524..44321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3787 ID=rna3787|Name=rna3787|organism=Nannochloropsis gaditana|type=mRNA|length=798bp|location=Sequence derived from alignment at CM002462.1:43524..44321- (Nannochloropsis gaditana)
ATATTCTTACAACTTCAGTATGACACCTGTCACTTCAAACGCAGATAAAT
TCATCGAGTTGCAGCTCACTTACTTACCCAGAAAAGACGATTTTTATCGA
CTTACAACCAGACTGCTGATCTTGGGTACACTCAAAAGATGGATGATGTA
AGTTTTCGTTGTGAGTTGTGTCAGGGGTGTGCTTATACGGGGATTTCATG
GGCACCGAGAAAAAAGGCCTTATTAGTAGTCACGAATAAATTTTAATTAT
TTATTTTTCGCCGTCTCCGCGCGTTTTGCTATTGGTAGACCAAAATGGAC
ATAAATATCGGGCTGCACGAGGATCTGCTCTCCCAGTACGACATTTTGAG
CAGAGAGCTCTCGCCGCGCCTCCGACGGGGATTGAATGATGTTTATGAGG
GGCTCGAGTGGATGATTACGCTAGGCGCTTTAGGTGTAGGCTTCTATTCA
GCTTCTCGCCTCCTCTATGCTACGTACTGGGTGTTGGACTGTCGTTCTAG
GAAGTCGACGCGCTGGCGGAAGCAAGTACTTGCTCTGAGCTTCGGCTCAG
TCATGGTAGGTTGTGCATGCACTGCGGGAGTCACACTTGCTCGAACAGGT
ATGGTTCGACGACGTGGAGTTTAGCGGCTTACAATAGAGATTTGGACCGC
GATAGTACCTGAAAGAGACACAAATCAGAGACTGAATACATTTTTATCAG
TTTTTTGCTACGAATTCTCTGTCAGGGCTCTTATAGTCTCATTACACGTA
ACAAAAATCTTTTCGCTTTGCGTGACATGTAGATCGAAGCAGACTTGA
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Coding sequence (CDS) from alignment at CM002462.1:43524..44321-

>rna3787 ID=rna3787|Name=rna3787|organism=Nannochloropsis gaditana|type=CDS|length=1350bp|location=Sequence derived from alignment at CM002462.1:43524..44321- (Nannochloropsis gaditana)
CGGCTTACAATAGAGATTTGGACCGCGATAGTACCTGAAAGAGACACAAA
TCAGAGACTGAATACATTTTTATCAGTTTTTTGCTACGAATTCTCTGTCA
GGGCTCTTATAGTCTCATTACACGTAACAAAAATCTTTTCGCTTTGCGTG
ACATGTAGATCGAAGCAGACTTGAACCAAAATGGACATAAATATCGGGCT
GCACGAGGATCTGCTCTCCCAGTACGACATTTTGAGCAGAGAGCTCTCGC
CGCGCCTCCGACGGGGATTGAATGATGTTTATGAGGGGCTCGAGTGGATG
ATTACGCTAGGCGCTTTAGGTGTAGGCTTCTATTCAGCTTCTCGCCTCCT
CTATGCTACGTACTGGGTGTTGGACTGTCGTTCTAGGAAGTCGACGCGCT
GGCGGAAGCAAGTACTTGCTCTGAGCTTCGGCTCAGTCATGATGGATGAT
CGGCTTACAATAGAGATTTGGACCGCGATAGTACCTGAAAGAGACACAAA
TCAGAGACTGAATACATTTTTATCAGTTTTTTGCTACGAATTCTCTGTCA
GGGCTCTTATAGTCTCATTACACGTAACAAAAATCTTTTCGCTTTGCGTG
ACATGTAGATCGAAGCAGACTTGAACCAAAATGGACATAAATATCGGGCT
GCACGAGGATCTGCTCTCCCAGTACGACATTTTGAGCAGAGAGCTCTCGC
CGCGCCTCCGACGGGGATTGAATGATGTTTATGAGGGGCTCGAGTGGATG
ATTACGCTAGGCGCTTTAGGTGTAGGCTTCTATTCAGCTTCTCGCCTCCT
CTATGCTACGTACTGGGTGTTGGACTGTCGTTCTAGGAAGTCGACGCGCT
GGCGGAAGCAAGTACTTGCTCTGAGCTTCGGCTCAGTCATGATGGATGAT
CGGCTTACAATAGAGATTTGGACCGCGATAGTACCTGAAAGAGACACAAA
TCAGAGACTGAATACATTTTTATCAGTTTTTTGCTACGAATTCTCTGTCA
GGGCTCTTATAGTCTCATTACACGTAACAAAAATCTTTTCGCTTTGCGTG
ACATGTAGATCGAAGCAGACTTGAACCAAAATGGACATAAATATCGGGCT
GCACGAGGATCTGCTCTCCCAGTACGACATTTTGAGCAGAGAGCTCTCGC
CGCGCCTCCGACGGGGATTGAATGATGTTTATGAGGGGCTCGAGTGGATG
ATTACGCTAGGCGCTTTAGGTGTAGGCTTCTATTCAGCTTCTCGCCTCCT
CTATGCTACGTACTGGGTGTTGGACTGTCGTTCTAGGAAGTCGACGCGCT
GGCGGAAGCAAGTACTTGCTCTGAGCTTCGGCTCAGTCATGATGGATGAT
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Synonyms
Publications