rna3773, rna3773 (mRNA) Nannochloropsis gaditana

Overview
Namerna3773
Unique Namerna3773
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1096
Alignment locationCM002462.1:11559..13680 +

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Properties
Property NameValue
Productjmjc domain-containing protein 4
Orig transcript idgnl|cribi|Naga_100103g14.7034.mrna
Orig protein idgnl|cribi|Naga_100103g14.7034
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002462.1supercontigCM002462.1:11559..13680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100103g14gene3634Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3773rna3773-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26897.1cds3764Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3773 ID=rna3773|Name=rna3773|organism=Nannochloropsis gaditana|type=mRNA|length=1096bp
TGTAAGGGAAAAAGGGAGAGTTTATGTGCGAGAGCAGAGGGGAGGTTGAA
ACGCATTGTTAGAAATACCAGTTTGATCACGCGGAGATCAGGCCCTGTCT
GCCTAATGCTAAATAGCTCACATGCCTCTTGCTACCTCATTCTTTGAATT
GATGGCTACATTATTATTATTAGACATTATTATAATTTAAGCCGATGCCT
ACATTTTTCTCCGCATTAATCGTTGAAGACTTGTGTGCGCGGCAGCTCAT
ATCTGGGCAGGGACGACAGGAGCAGCCAAAGAGAACGCGGCGGGAGAAAG
CCTTCGCAAAATTGTATAACCTCAAAGAATAGTTCTTTCTTTCATCGATA
GGTAGAAGACTCCGCTCTCTCCTGGTTATTCTGGCACTGTTCTCCAATGG
TCTTAATAATTAATGGAGAGGTCGTTTCAGACTCAGATCCACGTGCCATC
AAGGCCCGGGGAGGCGGAGCACCATCCTCTTCATCACACTCAGCGGCGCC
AGGTATAAATCAACGCCGGCAGCCTGCTACAATCCACAACAGGGGGGAGC
GGGAAGAGCCGAATGCCTCCAAGGGCACGAGCCAGGGTGAAGGCCGGAGC
TTTTTCCAAGGAAAAGCCTACACTACAAGTGAAGGGGCTGTGAAGGACTC
CCCTCGTCCACTCTCAACTTCTTCAGTTTCCGAGAGCACGTACTACCCAT
CGCCTCCCTTTTTGCAGCAGGCAGCTGAGGCTTTGGGCACTCAAGGGCGC
TTTGTGACCATCCCTGCCGTGCCCCTTTTGGGCCTATCGGCGAGTACCTT
CGACCTTCTTCCTTGTTTGTGTGCCGCGTTGGGTACGCTCTACTTTGGCT
GGAGAGGGGTGGGGGCCCTCGTGTTTTTTTACGTGCTAGTCAAGAAAAAC
CAGGGCGCACGGCACGGTAACGCTGACGGCGTCGGGCAACCTCGAAGGGA
CAACCACTCACGGGCACGCTAGGAAAGGTCGAGAATTGCGGTGGCGTATA
ATCCAACGGGGAGGCAATTAAACTTTATGTACAGAGATAAGATTGAACCA
AATACGCACCAAAAATGAAAGAAATTACATCGTATGCTGCGTTGTA
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protein sequence of rna3773

>rna3773-protein ID=rna3773-protein|Name=rna3773|organism=Nannochloropsis gaditana|type=polypeptide|length=524bp
MRFNLPSALAHKLSLFPLHRIHGVSELKIILMIPRIESASASPALLRHFL
DSNAPFLITDLASRWEATRAWVVPGEEENFQTLDLFENFICGHNRGELAE
ETLVPVVECPGDDDKHENVEGHHSHTSNSCQDKSNSYGTELRTEMHFTEY
ARLWRTGEAEARGLYLKDWHIVKVLKGLDGKHDKQDVREEVKAGIKDGDE
LCDVLATGKQGVQEERHEELVGACGAEVSPARPTAPSALFSVPFPLTDDW
LNAWWDAPASEAGHPAREDDYRFLYLGPAGTQTGLHYDVLCSYSWSANLA
GTKEWTLIHPDQKGFLAENLPLQSTVPFGSVDWSDVAVRVRQGPGEMIFV
PSGWFHRVRNVTGCLSINHNWFNRSCLDRVWTFVKEEASAVQERLYDLRE
TFDASLCGWERQCEVVMRANSSINLTEWVDLLLWKARDLRLRQKDTVAPD
ARLDLLAILKVLREVQRSERYVNFLFPSRFHEEPSVENLRPLPLPLQANS
PSQTEEWLAAEIQQLEKCAERLVG
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mRNA from alignment at CM002462.1:11559..13680+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3773 ID=rna3773|Name=rna3773|organism=Nannochloropsis gaditana|type=mRNA|length=2122bp|location=Sequence derived from alignment at CM002462.1:11559..13680+ (Nannochloropsis gaditana)
TGTAGGCATCGGCTTAAATTATAATAATGTCTAATAATAATAATGTAGCC
ATCAATTCAAAGAATGAGGTAGCAAGAGGCATGTGAGCTATTTAGCATTA
GGCAGACAGGGCCTGATCTCCGCGTGATCAAACTGGTATTTCTAACAATG
CgtttcaacctcccctctgctCTCGCACATAaactctccctttttccctt
acACAGGATCCATGGAGTCTCTGAATTAAAGATCATTCTTATGATCCCTC
GTATTGAGTCGGCTTCGGCTTCACCCGCGCTTTTGCGTCATTTTCTTGAC
AGCAATGCGCCTTTTTTGATCACCGATCTAGCATCTCGGTGGGAGGCGAC
ACGCGCCTGGGTGGTTccaggcgaggaagaaaatttCCAAACTCTTGATT
TGTTTGAGAACTTCATTTGTGGACATAATCGCGGTGAACTTGCGGAGGAG
ACACTGGTTCCAGTTGTAGAGTGTCCCGGAGACGATGATAAGCATGAAAA
CGTGGAAGGGCATCACTCACACACGAGTAACTCGTGCCAAGACAAGAGCA
ATTCTTACGGGACAGAGCTACGAACAGAGATGCACTTTACTGAGTATGCA
AGACTGTGGCGAACTGGAGAGGCTGAAGCTCGGGGCTTGTACCTCAAAGA
CTGGCACATCGTCAAGGTGTTGAAGGGCCTTGATGGGAAGCATGACAAGC
AGGACGTGCGAGAGGAGGTTAAGGCAGGTATCAAAGACGGAGACGAGCTT
TGCGATGTCCTGGCTACTGGAAAACAGGGCGttcaggaggaaagacaCGA
AGAACTAGTCGGTGCGTGCGGCGCAGAGGTCTCACCCGCAAGGCCCACTG
CACCGTCTGCCCTGTTCTCCGTACCTTTCCCCCTAACCGATGATTGGCTA
AACGCCTGGTGGGACGCCCCGGCAAGCGAAGCTGGGCATCCAGCTCGGGA
AGACGACTACCGTTTCTTGTATCTCGGACCAGCTGGTACGCAGACAGGCC
TCCATTACGACGTGTTATGCTCCTACTCCTGGTCGGCCAACCTTGCAGGC
ACAAAGGAATGGACGCTCATCCATCCTGATCAGAAGGGATTTCTTGCGGA
AAATCTGCCATTGCAATCCACAGTACCGTTTGGGTCGGTGGACTGGTCGG
ATGTAGCTGTAAGAGTGCGTCAGGGCCCGGGAGAGATGATCTTTGTCCCT
TCTGGGTGGTTTCATCGGGTGCGCAATGTGACAGGATGCCTCTCCATCAA
TCATAATTGGTTCAACCGGAGCTGCCTGGACAGGGTTTGGACATTCGTTA
AAGAAGAGGCAAGTGCTGTGCAGGAGCGGTTGTATGACCTGCGCGAGACG
TTCGATGCGAGCCTGTGTGGATGGGAGCGGCAATGCGAGGTTGTCATGCG
GGCGAACAGCTCGATCAATTTGACAGAGTGGGTGGACTTGCTCCTGTGGA
AAGCACGGGACTTGCGGTTGAGACAGAAAGACACTGTCGCACCAGACGCG
AGGCTTGACCTTTTGGCGATCCTGAAAGTCTTACGAGAAGTGCAACGCTC
GGAAAGATATGTGAATTTCTTGTTCCCGTCACGTTTTCATGAAGAGCCAT
CTGTGGAGAATCTGAGACCTCTACCTCTGCCGTTACAAGCAAACTCGCCA
TCACAAACTGAAGAATGGCTTGCAGCAGAGATACAGCAGCTCGAAAAGTG
CGCGGAGCGCCTTGTTGGGTAGCGCGGGCATGGTCTTGGAGACTGCGCAG
ATCGGCATGGTCAGGAGGTTTTCACATTCTGGTTCTTCGGCATAAAGACA
TATCTGCAGACAGACGTCATGGAGCAAGGATAGAAATGAAGTGTGGAAGA
GATTATGTCAGAATCGTTGAGACAGAACGAATATTGTTGAATGTGAATAT
AACAGGAGAGCAAAGGGAAGTTTATCCCGGCAAGAAGAACATTGGTTCAA
ATAATTCGCAACACATAAAAGTCAACAATGTCTGTTTACCTTTGCACATC
TCCCCACGTATGTCACACTAGCCTCCTGCGTACGAGATCCTCTTTCATTT
TAACATATCTACACGCGCAACATTTGAACTACCTACTGCTCTCCTACCCA
TCCCCcattacctcctcctccc
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Coding sequence (CDS) from alignment at CM002462.1:11559..13680+

>rna3773 ID=rna3773|Name=rna3773|organism=Nannochloropsis gaditana|type=CDS|length=1575bp|location=Sequence derived from alignment at CM002462.1:11559..13680+ (Nannochloropsis gaditana)
ATGCgtttcaacctcccctctgctCTCGCACATAaactctccctttttcc
cttacACAGGATCCATGGAGTCTCTGAATTAAAGATCATTCTTATGATCC
CTCGTATTGAGTCGGCTTCGGCTTCACCCGCGCTTTTGCGTCATTTTCTT
GACAGCAATGCGCCTTTTTTGATCACCGATCTAGCATCTCGGTGGGAGGC
GACACGCGCCTGGGTGGTTccaggcgaggaagaaaatttCCAAACTCTTG
ATTTGTTTGAGAACTTCATTTGTGGACATAATCGCGGTGAACTTGCGGAG
GAGACACTGGTTCCAGTTGTAGAGTGTCCCGGAGACGATGATAAGCATGA
AAACGTGGAAGGGCATCACTCACACACGAGTAACTCGTGCCAAGACAAGA
GCAATTCTTACGGGACAGAGCTACGAACAGAGATGCACTTTACTGAGTAT
GCAAGACTGTGGCGAACTGGAGAGGCTGAAGCTCGGGGCTTGTACCTCAA
AGACTGGCACATCGTCAAGGTGTTGAAGGGCCTTGATGGGAAGCATGACA
AGCAGGACGTGCGAGAGGAGGTTAAGGCAGGTATCAAAGACGGAGACGAG
CTTTGCGATGTCCTGGCTACTGGAAAACAGGGCGttcaggaggaaagaca
CGAAGAACTAGTCGGTGCGTGCGGCGCAGAGGTCTCACCCGCAAGGCCCA
CTGCACCGTCTGCCCTGTTCTCCGTACCTTTCCCCCTAACCGATGATTGG
CTAAACGCCTGGTGGGACGCCCCGGCAAGCGAAGCTGGGCATCCAGCTCG
GGAAGACGACTACCGTTTCTTGTATCTCGGACCAGCTGGTACGCAGACAG
GCCTCCATTACGACGTGTTATGCTCCTACTCCTGGTCGGCCAACCTTGCA
GGCACAAAGGAATGGACGCTCATCCATCCTGATCAGAAGGGATTTCTTGC
GGAAAATCTGCCATTGCAATCCACAGTACCGTTTGGGTCGGTGGACTGGT
CGGATGTAGCTGTAAGAGTGCGTCAGGGCCCGGGAGAGATGATCTTTGTC
CCTTCTGGGTGGTTTCATCGGGTGCGCAATGTGACAGGATGCCTCTCCAT
CAATCATAATTGGTTCAACCGGAGCTGCCTGGACAGGGTTTGGACATTCG
TTAAAGAAGAGGCAAGTGCTGTGCAGGAGCGGTTGTATGACCTGCGCGAG
ACGTTCGATGCGAGCCTGTGTGGATGGGAGCGGCAATGCGAGGTTGTCAT
GCGGGCGAACAGCTCGATCAATTTGACAGAGTGGGTGGACTTGCTCCTGT
GGAAAGCACGGGACTTGCGGTTGAGACAGAAAGACACTGTCGCACCAGAC
GCGAGGCTTGACCTTTTGGCGATCCTGAAAGTCTTACGAGAAGTGCAACG
CTCGGAAAGATATGTGAATTTCTTGTTCCCGTCACGTTTTCATGAAGAGC
CATCTGTGGAGAATCTGAGACCTCTACCTCTGCCGTTACAAGCAAACTCG
CCATCACAAACTGAAGAATGGCTTGCAGCAGAGATACAGCAGCTCGAAAA
GTGCGCGGAGCGCCTTGTTGGGTAG
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Synonyms
Publications