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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100227g4.9067.mrna |
| Orig protein id | gnl|cribi|Naga_100227g4.9067 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:1176419..1178907 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3767 ID=rna3767|Name=rna3767|organism=Nannochloropsis gaditana|type=mRNA|length=2603bp
TTTCAATACACTTGCTTGGTAGGAACAGCATGAGACGCGCATCGCCTCGA
GAGGCCTCATGCCCCCCGTCGTCTGCCTGTCCATACTTGTGCCCGAGCGC
GGCTTCCTTGGAAGTAAGGATCGCGCCAGCCGGCGGCGTGAGCCGTCGGC
GGCCTCTCGTGACAGGCGAACGGGACTGTGATGCGCTCACGCAGCATCTA
GAGGATACGGACAGCGCGGTCGCCGACTTCCCGCAGGAGGGGTTCTCCAC
ACCGCTTACCATATCTGGAGAGCGCAACCTTGAAAGCCCGTTTCCCGCGC
CGTCAACACGCTTTCCCCTTCCAACCACTCCCAAGCGAGATTCACGCATC
GTTTTAGCCCCATTGCCACTCGAGCTACCCACGGAGACGCCCTCCGCCGA
GCTAGTTGTCCTAGCGGTTCGCCTCTCTCCCGGTCTCACTCCTCAACCGT
GTACTTGCCTGCTGCCCAACCCTCCGTCGCGGCCTCAGCCCCAGACTTGC
CTGGCTCCCCGTGACAGTAGTAGCCGATGCACTACTCAACATACCACATC
TCAGGAGTCACGGCACCCTTCAAGCGAAGCGTACCTGCTTTTGAAGCAGT
TGACGAAGCCCAGAGACCGCGTTCGACTTTGGTTAGCTCAGGTGCTGCAG
GAGGAGAGCGAAAAGGAGGGGGGTGAGACAACGGTTTATACTCCCGTCGG
TTCAAAAAAAGTGGTGATCAAGGAATCTGATGCCTCCTTCATCCGAGCAT
ACGGGCAACTCTGGGGGGAGGACCCAGTAGCAGAGGCGGGAGCTCTCCTC
CGCATTGGACAGTCGCGGGTTGTCGCGATGGAAGGACAAGCGCACGGCGA
CGAGCATGTCATCGCGGTGGAGACGGTCTTTGAGGGCGCGGGTTCGAGTC
GGGGACTGCTCTTCATGGTAATGCCCTACCTGGTGGGGGAGGAGCTTTTC
TACCGCGTCACCAAAACTGCAGGGCATGAGGGGCTAGGGGAGGACGGAAC
ACGGCCCATATTCCGGCAGATCGTGCAAGGTCTCTTGCACTTGAAGAAGG
CGCATGGAATCCGACATGGTGACGTCTCTCCGGAGAATGTGATGGTGGGG
CCTGATGGGCACGTCACCCTCATCGACCTGGGCATGGCAGAGCGCGTTCC
CTCCCTCCCTCCCTCTCTCCACCCTTCCTCTTCCGTACCCCCTGGAGTGC
TTTTACGAGCTCGCCCCCGGCGTGGGAAGAAGCAGTACATGGCACCAGAG
ATCTTCGAAGAGCGGAACTACGATCCTTACGCCGCAGACGTCTGGGCCCT
CGGAGCCTTGCTCTATGTGTGCTGGACAGGTTGCACCATCTATCGATCTG
TTACTGACGTGCAGTTCGCGGCGTTGAAGGACACTGCGGGGATGGGCGGG
CTGCAAAAGCTGCTGGCAGAGAGGGAACTCTCGGGGAGGACCCGGTCTTT
GTCTGCGGAGGCAAAGGACTTGCTGGGCCGGATGATGGTATGGGATCTTG
GAGAGCGAATGACGCTAGAGGAGGTGGCCGCGCACCCCTGGGTGCTGGCA
TCGGCAAAAGAATGGGAAGCGAAGGAGTGGGACGGACAGGTTGAAGTACC
CTTGCCCCTGTTCAATTCCTCCTCGGTCTCGGCGCCCCCTGTCCTGGCGC
GGAAGGAGATAGCGCAAGGAGGAGGCTTCTCAGCCCTCTCAGCCCTCTCA
GTGGGTAACTGTAAGGAAGATGTGAAGGAGGAGGGAGCTAAGGACGCCGA
GGATATCGTGCATCCCCGTACGTCCTCGTCCACTACGATGTCCACCTATT
CCAAGCAGGTCAGCAACAACAGTGACGACAACAGTGTCAGCTCCCTCCGT
GTCTCGGAGATGGAGAACCTGCGCAACAATTTTAACAACAACAATTACGA
GAGAGAAGTAGACTGGGAAAAGGATTTGGGACATCACTATCGCGACGAGC
AAGACGGAGGCACCTCGAGATCAGCCTCTGTTTCATCCTCCTCCCTCCAG
TCGCGTTGTTCCTCTTTCGCCGGGGACGATGGGAGATCAGGAGGAGAAGG
ACGGGAGACATGGGTCAGTGAAAGGGGCGCCTTCACTCCATCAGATATGG
CCTTCTGGTCGTCGTGATCGTTTTGTGCTTCCCAGTGGACGGTGGGGCAA
ATAGTGCCTGTGGATGGCAGGAGAGAGGTATAGAAAACCGATAGCCTGTC
TGAAAAATGCGCTAGATAGGTATCGAATATGCATCGAAGGTAGGACAAAC
AGAGCATGGACACACATCATCTGTCCGAAATGTGATGCAAATCGTCCAAA
GATGGGGTGGCTACGCATGTCTCCACATCCAGGAGACATTGTTGAGCAAC
ATGTACTTGCGCCTAGACGGCGTGATGAGAGCATGGAACTTAAGTGTGCA
TATTACGCTGTGAAGTAAAAATAGGTCAGATCTAGCTCACAGTATGCAAA
ATATAGCTACAGACATAACGTTACACGTATTGGTGTGCATGTAGTGAGAT
AGGTTCAATAGGCACGCTTCCAGACAAAAGATCCTGTATAAGCGGTGAGA
TGTATGACAGGTCAGTAAGCATCGTCGAAAAGTGAGAATAATCTAAGCTT
TGA back to topprotein sequence of rna3767 >rna3767-protein ID=rna3767-protein|Name=rna3767|organism=Nannochloropsis gaditana|type=polypeptide|length=704bp
MHVFYAGPGNGILMDLFGLNDRHLHTTGFTGQTKKSCGCPKKIVQFTSLD
INIVLKKASVQLAMALESPWPDPLFDGRTTVERRQQFGPSRTHSSTSSAT
QPSILTQCPSAWDRVRLLAQTGAISTPTRHMGPFRPSREEHFQSSHREKQ
PLHLPQLDSPPHVKHQSSQHMKYRHDDEDVKRQVDSVTQKPFSPCSPSVL
PLSQPHLPNWTSCQERHHSTYEREREENMPGSLDVFARPKKGATAGAYPF
IALNHQIGHCPQSSSLPSLTDSFRRLGALPREVEDFFEKLLSDLPPMHRH
SKPTAPSLLLTPAFDLGTLKRQVLDLQKEVSRLYNDQECLFKQNKQLWEQ
LRGICQAPEFVAAEGQVEQVHAALLERQAELEALQEFLRQTPDIEAHLWT
VREDRERAREILSLAHGGSAEAAHALTLVMGENKALEEELMQQTVVLENL
QEYLIKCRVAQQEEDMEELEEVAARMHAASASCLRRRRKVFSFLRLAAWR
ARQMREIASRFEVASVKCLALKALTALAEHRRVGQKVRQARQKREGTLVR
QVVAAWQHHVYEEQLARLADRRRVFRHCLVGWRQATREGQRHHRIEVKRQ
RLQEQRLAVDVFKSWHRVMLLATASSRDGVRRAILAWQRRAWRNFCLRVG
QRERECGLPGQELTSSGLISCHVCKIEPERRGPRASRGQVQVLLPTQRIR
YVKT back to topmRNA from alignment at CM002461.1:1176419..1178907+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3767 ID=rna3767|Name=rna3767|organism=Nannochloropsis gaditana|type=mRNA|length=2489bp|location=Sequence derived from alignment at CM002461.1:1176419..1178907+ (Nannochloropsis gaditana)
AGACAGGGCTGCAGAGAGTGCCAGCTGCTTTCAGCCGCACGGCTTGCTCG
GGACTTCttgaaaaatggcgcgaagctTGCTCGAGGTTTCttggaaaatg
gcgcgaaagctttACGTTCAGGCCTTGGAATGCATGTCTTCTACGCCGGA
CCAGGAAACGGAATACTCATGGACCTTTTTGGCTTAAACGATCGACATCT
ACACACAACAGGCTTTACAGGCCAAACAAAGAAGTCTTGTGGTTGCCCCA
AAAAAATCGTTCAATTTACTTCACTAGACATCAACATCGTTTTAAAGAAA
GCCAGCGTGCAACTAGCCATGGCCTTGGAGTCGCCTTGGCCTGACCCGCT
CTTCGATGGTAAAGTTTATAAATCAGAAATGGTAGCATGGGTGGAAGCAA
TTTCTGCATGCATCTGTTCAGTCATTTCCTCAAGCTTCATGTACGCGTCG
AGAGACAGACTCTTTGACATCATATTACCCACCATTTGCTAGGCCGTACC
ACGGTTGAGCGGCGGCAACAGTTTGGACCATCTAGGACCCATTCAAGCAC
TTCGTCTGCCACACAGCCTTCCATTTTAACACAATGTCCTTCAGCGTGGG
ATCGTGTACGCCTCTTGGCGCAGACAGGGGCCATTTCCACGCCGACAAGG
CATATGGGCCCTTTCCGTCCTTCACGAGAAGAACATTTTCAAAGCTCCCA
CCGAGAAAAGCAACCACTTCACTTACCACAACTCGACTCTCCGCCACATG
TGAAGCATCAAAGTTCACAGCACATGAAGTATCGCCACGACGATGAGGAT
GTAAAACGGCAAGTGGATAGTGTTACCCAAAAACCTTTTAGCCCATGCTC
TCCTTCAGTATTACCTTTGTCTCAGCCACATCTACCTAATTGGACCTCAT
GCCAAGAAAGGCATCATTCCACGtatgaaagagagagagaagagaataTG
CCCGGCAGCTTGGACGTCTTTGCAAGGCCAAAAAAAGGTGCTACGGCGGG
CGCCTATCCCTTCATCGCCTTAAATCATCAGATTGGACATTGTCCTCAAT
CTTCCTCTTTACCTTCTCTCACGGATAGCTTTCGACGCCTGGGAGCCCTT
CCAAGAGAAGTAGAAGATTTTTTCGAAAAATTGCTATCCGATCTTCCTCC
AATGCACAGGCATTCCAAACCaactgccccttccctcctcttgacccCCG
CCTTCGACCTTGGCACTCTGAAGCGGCAAGTGCTTGACTTACAAAAGGAA
GTAAGCAGGCTCTATAATGACCAGGAATGTCTCTTCAAGCAGAACAAACA
GCTCTGGGAACAATTGCGGGGGATCTGTCAGGCTCCTGAATttgtggcgg
cggagggacaGGTCGAGCAGGTGCATGCCGCCTTGCTGGAACGACAGGCA
GAATTGGAAGCTCTACAAGAATTCCTGCGACAGACACCGGATATTGAAGC
TCACCTATGGACAGTGCGAGAAGACCGCGAAAGGGCTCGTGAGATCTTGA
GTCTGGCGCATGGAGGCAGTGCAGAAGCGGCGCATGCCCTGACCCTGGTG
ATGGGTGAGAATAAggccttggaagaggagttAATGCAGCAGACAGTGGT
GCTTGAAAACTTGCAAGAGTACCTAATTAAATGTCGGGTTGCgcagcagg
aagaggatatGGAGGAACTTGAGGAGGTAGCGGCTCGAATGCACGCGGCG
TCCGCCTCGTGTCTCCGGCGCCGGCGCAAGgttttctcctttttgcGGTT
GGCGGCGTGGAGGGCTCGGCAAATGCGAGAAATCGCGAGCCGTTTCGAAG
TTGCTAGCGTAAAGTGCCTGGCCCTGAAGGCACTTACGGCTCTGGCTGAG
CACCGGCGCGTGGGTCAAAAGGTTCGGCAAGCCCgacagaagagggaggg
taccTTAGTGCGACAGGTTGTTGCCGCCTGGCAGCACCACGTCTACGAAG
AGCAGCTGGCGCGATTGGCGGACCGACGTCGAGTTTTCCGCCACTGCCTC
GTGGGATGGCGCCAGGCGACGAGAGAGGGACAGCGGCACCATCGGATCGA
GGTCAAACGACAAAGGCTGCAGGAGCAACGGCTTGCGGTCGACGTATTCA
AAAGCTGGCATCGTGTGATGTTGCTTGCCACAGCCTCATCGCGAGATGGT
GTAAGAAGAGCAATCTTAGCCTGGCAACGGAGAGCTTGGAGGAATTTTTG
TCTACGGGTtgggcagagggagagggagtgcggTCTTCCGGGCCAAGAGC
TAACCTCTAGCGGGCTTATTTCATGCCACGTTTGCAAAATAGAGCCCGAA
AGACGAGGCCCTCGGGCCTCGAGAGGACAGGTCCAAGTCCTCTTGCCTAC
GCAGCGCATTAGATACGTGAAAACATAATCAGACGGCAGCTATTTTAAAT
TGAAAGTTTTTGAGAATAAATATAATGCTGAAGAAAAGACGGATACCCTC
GATTCAAAGCAATACCCCCAAAAATGGCGCACCGAGAGA back to topCoding sequence (CDS) from alignment at CM002461.1:1176419..1178907+ >rna3767 ID=rna3767|Name=rna3767|organism=Nannochloropsis gaditana|type=CDS|length=4230bp|location=Sequence derived from alignment at CM002461.1:1176419..1178907+ (Nannochloropsis gaditana)
ATGCATGTCTTCTACGCCGGACCAGGAAACGGAATACTCATGGACCTTTT
TGGCTTAAACGATCGACATCTACACACAACAGGCTTTACAGGCCAAACAA
AGAAGTCTTGTGGTTGCCCCAAAAAAATCGTTCAATTTACTTCACTAGAC
ATCAACATCGTTTTAAAGAAAGCCAGCGTGCAACTAGCCATGGCCTTGGA
GTCGCCTTGGCCTGACCCGCTCTTCGATGGCCGTACCACGGTTGAGCGGC
GGCAACAGTTTGGACCATCTAGGACCCATTCAAGCACTTCGTCTGCCACA
CAGCCTTCCATTTTAACACAATGTCCTTCAGCGTGGGATCGTGTACGCCT
CTTGGCGCAGACAGGGGCCATTTCCACGCCGACAAGGCATATGGGCCCTT
TCCGTCCTTCACGAGAAGAACATTTTCAAAGCTCCCACCGAGAAAAGCAA
CCACTTCACTTACCACAACTCGACTCTCCGCCACATGTGAAGCATCAAAG
TTCACAGCACATGAAGTATCGCCACGACGATGAGGATGTAAAACGGCAAG
TGGATAGTGTTACCCAAAAACCTTTTAGCCCATGCTCTCCTTCAGTATTA
CCTTTGTCTCAGCCACATCTACCTAATTGGACCTCATGCCAAGAAAGGCA
TCATTCCACGtatgaaagagagagagaagagaataTGCCCGGCAGCTTGG
ACGTCTTTGCAAGGCCAAAAAAAGGTGCTACGGCGGGCGCCTATCCCTTC
ATCGCCTTAAATCATCAGATTGGACATTGTCCTCAATCTTCCTCTTTACC
TTCTCTCACGGATAGCTTTCGACGCCTGGGAGCCCTTCCAAGAGAAGTAG
AAGATTTTTTCGAAAAATTGCTATCCGATCTTCCTCCAATGCACAGGCAT
TCCAAACCaactgccccttccctcctcttgacccCCGCCTTCGACCTTGG
CACTCTGAAGCGGCAAGTGCTTGACTTACAAAAGGAAGTAAGCAGGCTCT
ATAATGACCAGGAATGTCTCTTCAAGCAGAACAAACAGCTCTGGGAACAA
TTGCGGGGGATCTGTCAGGCTCCTGAATttgtggcggcggagggacaGGT
CGAGCAGGTGCATGCCGCCTTGCTGGAACGACAGGCAGAATTGGAAGCTC
TACAAGAATTCCTGCGACAGACACCGGATATTGAAGCTCACCTATGGACA
GTGCGAGAAGACCGCGAAAGGGCTCGTGAGATCTTGAGTCTGGCGCATGG
AGGCAGTGCAGAAGCGGCGCATGCCCTGACCCTGGTGATGGGTGAGAATA
AggccttggaagaggagttAATGCAGCAGACAGTGGTGCTTGAAAACTTG
CAAGAGTACCTAATTAAATGTCGGGTTGCgcagcaggaagaggatatGGA
GGAACTTGAGGAGGTAGCGGCTCGAATGCACGCGGCGTCCGCCTCGTGTC
TCCGGCGCCGGCGCAAGgttttctcctttttgcGGTTGGCGGCGTGGAGG
GCTCGGCAAATGCGAGAAATCGCGAGCCGTTTCGAAGTTGCTAGCGTAAA
GTGCCTGGCCCTGAAGGCACTTACGGCTCTGGCTGAGCACCGGCGCGTGG
GTCAAAAGGTTCGGCAAGCCCgacagaagagggagggtaccTTAGTGCGA
CAGGTTGTTGCCGCCTGGCAGCACCACGTCTACGAAGAGCAGCTGGCGCG
ATTGGCGGACCGACGTCGAGTTTTCCGCCACTGCCTCGTGGGATGGCGCC
AGGCGACGAGAGAGGGACAGCGGCACCATCGGATCGAGGTCAAACGACAA
AGGCTGCAGGAGCAACGGCTTGCGGTCGACGTATTCAAAAGCTGGCATCG
TGTGATGTTGCTTGCCACAGCCTCATCGCGAGATGGTGTAAGAAGAGCAA
TCTTAGCCTGGCAACGGAGAGCTTGGAGGAATTTTTGTCTACGGGTtggg
cagagggagagggagtgcggTCTTCCGGGCCAAGAGCTAACCTCTAGCGG
GCTTATTTCATGCCACGTTTGCAAAATAGAGCCCGAAAGACGAGGCCCTC
GGGCCTCGAGAGGACAGGTCCAAGTCCTCTTGCCTACGCAGCGCATTAGA
TACGTGAAAACATAAATGCATGTCTTCTACGCCGGACCAGGAAACGGAAT
ACTCATGGACCTTTTTGGCTTAAACGATCGACATCTACACACAACAGGCT
TTACAGGCCAAACAAAGAAGTCTTGTGGTTGCCCCAAAAAAATCGTTCAA
TTTACTTCACTAGACATCAACATCGTTTTAAAGAAAGCCAGCGTGCAACT
AGCCATGGCCTTGGAGTCGCCTTGGCCTGACCCGCTCTTCGATGGCCGTA
CCACGGTTGAGCGGCGGCAACAGTTTGGACCATCTAGGACCCATTCAAGC
ACTTCGTCTGCCACACAGCCTTCCATTTTAACACAATGTCCTTCAGCGTG
GGATCGTGTACGCCTCTTGGCGCAGACAGGGGCCATTTCCACGCCGACAA
GGCATATGGGCCCTTTCCGTCCTTCACGAGAAGAACATTTTCAAAGCTCC
CACCGAGAAAAGCAACCACTTCACTTACCACAACTCGACTCTCCGCCACA
TGTGAAGCATCAAAGTTCACAGCACATGAAGTATCGCCACGACGATGAGG
ATGTAAAACGGCAAGTGGATAGTGTTACCCAAAAACCTTTTAGCCCATGC
TCTCCTTCAGTATTACCTTTGTCTCAGCCACATCTACCTAATTGGACCTC
ATGCCAAGAAAGGCATCATTCCACGtatgaaagagagagagaagagaata
TGCCCGGCAGCTTGGACGTCTTTGCAAGGCCAAAAAAAGGTGCTACGGCG
GGCGCCTATCCCTTCATCGCCTTAAATCATCAGATTGGACATTGTCCTCA
ATCTTCCTCTTTACCTTCTCTCACGGATAGCTTTCGACGCCTGGGAGCCC
TTCCAAGAGAAGTAGAAGATTTTTTCGAAAAATTGCTATCCGATCTTCCT
CCAATGCACAGGCATTCCAAACCaactgccccttccctcctcttgacccC
CGCCTTCGACCTTGGCACTCTGAAGCGGCAAGTGCTTGACTTACAAAAGG
AAGTAAGCAGGCTCTATAATGACCAGGAATGTCTCTTCAAGCAGAACAAA
CAGCTCTGGGAACAATTGCGGGGGATCTGTCAGGCTCCTGAATttgtggc
ggcggagggacaGGTCGAGCAGGTGCATGCCGCCTTGCTGGAACGACAGG
CAGAATTGGAAGCTCTACAAGAATTCCTGCGACAGACACCGGATATTGAA
GCTCACCTATGGACAGTGCGAGAAGACCGCGAAAGGGCTCGTGAGATCTT
GAGTCTGGCGCATGGAGGCAGTGCAGAAGCGGCGCATGCCCTGACCCTGG
TGATGGGTGAGAATAAggccttggaagaggagttAATGCAGCAGACAGTG
GTGCTTGAAAACTTGCAAGAGTACCTAATTAAATGTCGGGTTGCgcagca
ggaagaggatatGGAGGAACTTGAGGAGGTAGCGGCTCGAATGCACGCGG
CGTCCGCCTCGTGTCTCCGGCGCCGGCGCAAGgttttctcctttttgcGG
TTGGCGGCGTGGAGGGCTCGGCAAATGCGAGAAATCGCGAGCCGTTTCGA
AGTTGCTAGCGTAAAGTGCCTGGCCCTGAAGGCACTTACGGCTCTGGCTG
AGCACCGGCGCGTGGGTCAAAAGGTTCGGCAAGCCCgacagaagagggag
ggtaccTTAGTGCGACAGGTTGTTGCCGCCTGGCAGCACCACGTCTACGA
AGAGCAGCTGGCGCGATTGGCGGACCGACGTCGAGTTTTCCGCCACTGCC
TCGTGGGATGGCGCCAGGCGACGAGAGAGGGACAGCGGCACCATCGGATC
GAGGTCAAACGACAAAGGCTGCAGGAGCAACGGCTTGCGGTCGACGTATT
CAAAAGCTGGCATCGTGTGATGTTGCTTGCCACAGCCTCATCGCGAGATG
GTGTAAGAAGAGCAATCTTAGCCTGGCAACGGAGAGCTTGGAGGAATTTT
TGTCTACGGGTtgggcagagggagagggagtgcggTCTTCCGGGCCAAGA
GCTAACCTCTAGCGGGCTTATTTCATGCCACGTTTGCAAAATAGAGCCCG
AAAGACGAGGCCCTCGGGCCTCGAGAGGACAGGTCCAAGTCCTCTTGCCT
ACGCAGCGCATTAGATACGTGAAAACATAA back to top
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