rna3766, rna3766 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3766
Unique Name	rna3766
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2293
Alignment location	CM002461.1:1173159..1175761 -

Link to JBrowse

Properties


Property Name	Value
Product	protein kinase
Orig transcript id	gnl\|cribi\|Naga_100227g3.9069.mrna
Orig protein id	gnl\|cribi\|Naga_100227g3.9069
Gene	PK
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:1173159..1175761 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PK	gene3627	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26917.1	cds3757	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3766	rna3766-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:1173159..1175761-
coding sequence from alignment at CM002461.1:1173159..1175761-

mRNA sequence

>rna3766 ID=rna3766|Name=rna3766|organism=Nannochloropsis gaditana|type=mRNA|length=2293bp
TATGGATAGTGTGCAGTGTACGATCTTAACTTTCTTCTGGACTTTGCTAT
TGAATTCGACCCGCCGCATCATCTGCCAACATGCGTTGTTGCATGCGAAC
CTTCAGTTGTTGAGACCAACTGGCATATTTTCTTCTTTCTCCGTGCACCC
GGATAATTAGGCCTCAATCATCATGCGCAAACGCAGACATGATGATAGCA
GCCAGAATAGCGAAGTAGCGTTGTCTTCTCAAGTAAAAAGAGCGGTCAAT
CCACGTTCAACACGCTCGCATTCAAGATCAACAGATAAAGGTATAAGCGA
CGAGGCGAAGAAAAATCAATTTTCAGCTCCGGACTCCAAGAGCGCAGCCA
GCAGGCCGTCACGGGGACAATTCTCCCTAAAGCATGCGCGCGAGGAGCCA
GCCACGGAGCAGAATCTTGTGAATCAATCTAGAGACTCGCCGCGGCCGCC
CATGCAGCCTTGCCTAGTTCATTGCCATGGAGCAATGGAGGACATGGACA
GCATTTCGAGCACAAACACCACCAAGAGGAATGTCGAAGGGCGACCCTCC
TTAATAATCCTCCAAACACAATGCTTGGAGGCAATCCTGCAAAATTTGAC
ACCGATTTCCAGGTGTCCCTCCGCACCTCCCGTCCTGCTCGCAGAGGAAC
GCCTGGCGCTCCGAAAGCTCGGGCTTCAACTCATGGCATTAACGGCGCCA
GATGATGGGGAAAATAGCGGATTTCCATTGTCATATGCGGGGGCAGAGCA
TGCCGGTGTGGACATGGTGTCGGCGAGTGAGGAAGAGAGGGAGGAAAGAC
GAGGAGAGGCGAGTAAGGCGTTCGCGCCTCTTTGCGGCCGTGGTATCGCC
AGCGACGAATCAAGTACATACAACGGGTTGAGTAGTACTGATAACGGGGC
TCAAAGATCAGGCAATCGCCCATCCCGACTCTCGTCTTCCTCTTCCGTTC
CCGCTGCCTCGCTGTCTTCCCCTTCCCTTTCCTTAAAGCGCCCATCGAGC
GCCATGCGGGCCTTCAGGTACAAAAGTGGCCCCTGCCCGAAACATGCCTC
CTACGACTTGCCCAGAACTATAAAAGGGAACCCGGGGGGCATTACTCGCG
CCGGGAAGCCCCCTGACGACGGACTCCTCGTGCTGCCCGAGTCCGTCTGG
CAGCATGCCTTCTCCTTCGTTCCTGCCCACGACCTGTTGAGCGTCATGCT
CACCGCCCGTCCCTTCTGCAGCATGGCCGAGCCATTCAAAGGCTTCTATT
TTCACTGGAATCTTCGCGCCGCAGAAAGCCTGCAATCCCTCCGTCCTTAT
ATCAGTAAGCTGCGGCACCTGAACGCGAAGATGCGGGCCATCCTCCTCGA
CTGGGTAACGGATGTCCACCAGTCCCTCTCCTTCGCGCCCGCCACCCTCT
ACAGGACGGCACAGGTGCTGGATCAATTTTTGAGCCGCACTGAAAACGTG
ACCCGCGAGAAGCTGCAGTTGGTGGGGGTGACGGCCTTCATGGTGGCCGC
CAAGGGCGTGGAGCACACGCCCCCCGATCCGGACGACTGTGCCTACTGGA
CCGACAACGCCTACAGCGGCCTGGAGGTCTCGTCCATGGAATCCCGCCTT
CTCAAGGTCCTCTCGCAGTCACCCTTCCGCCCTCCCTCGCTCCCTCCCAC
CGCTCAGGACTTTCTCACCCTTTATTTGAAGGAGGTAGGGGCTGGGAAGC
TCGCTTCTTGCCGGGCCCAGTACTACTGCGAGCGGACGCTCCAAGAGCAC
GACATGCTGTCCTTTCCTCCGTCGCTGATCGCCGCCGCCTCTGTCATCCT
TGCCTTGAAGAGTAGTCCCATCCCAGTCGTTGTCCATCCATGCTCCACCC
AGAAGCCCAAGTCCTGGACAGAGGCCGTTGCGCACTATTCCGGGTATTCG
GACACGAAGGTGGCGGCCTGCGCCCGGCGGATTTGTCAGCACGTGCGGCA
CACCGTGACCACGCTGTCTGGTAGGAAATTGGACGCGGTGAAAAGAAAAT
ACGCGAACGGGCTCTTCCTGGCCGTCAGTAGGATGGAGCCTCCCACATGG
GGGGGGGGCCCGGGTGAAGACGCTGAGAAAGCGGAAGGAGGGGGCGGGCA
AGAAGAGGGAGGAGAGATCTCGAACGCTGAGGGAGGAAACGCGCCGGGCG
GAGATGAGGTGGACGTAGAGGAAGCAGTCCCGGAGAGTTCCGTGAGGAGG
AGTGATGGACGGCAGAGGATGAGGATTGTCCATACTGTTTGCGCTGACCT
GCATCCGGGAAAGCGTGCGTTTGAAGAAGAGGAATTCAAATGA

protein sequence of rna3766

>rna3766-protein ID=rna3766-protein|Name=rna3766|organism=Nannochloropsis gaditana|type=polypeptide|length=695bp
MRRASPREASCPPSSACPYLCPSAASLEVRIAPAGGVSRRRPLVTGERDC
DALTQHLEDTDSAVADFPQEGFSTPLTISGERNLESPFPAPSTRFPLPTT
PKRDSRIVLAPLPLELPTETPSAELVVLAVRLSPGLTPQPCTCLLPNPPS
RPQPQTCLAPRDSSSRCTTQHTTSQESRHPSSEAYLLLKQLTKPRDRVRL
WLAQVLQEESEKEGGETTVYTPVGSKKVVIKESDASFIRAYGQLWGEDPV
AEAGALLRIGQSRVVAMEGQAHGDEHVIAVETVFEGAGSSRGLLFMVMPY
LVGEELFYRVTKTAGHEGLGEDGTRPIFRQIVQGLLHLKKAHGIRHGDVS
PENVMVGPDGHVTLIDLGMAERVPSLPPSLHPSSSVPPGVLLRARPRRGK
KQYMAPEIFEERNYDPYAADVWALGALLYVCWTGCTIYRSVTDVQFAALK
DTAGMGGLQKLLAERELSGRTRSLSAEAKDLLGRMMVWDLGERMTLEEVA
AHPWVLASAKEWEAKEWDGQVEVPLPLFNSSSVSAPPVLARKEIAQGGGF
SALSALSVGNCKEDVKEEGAKDAEDIVHPRTSSSTTMSTYSKQVSNNSDD
NSVSSLRVSEMENLRNNFNNNNYEREVDWEKDLGHHYRDEQDGGTSRSAS
VSSSSLQSRCSSFAGDDGRSGGEGRETWVSERGAFTPSDMAFWSS

mRNA from alignment at CM002461.1:1173159..1175761-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3766 ID=rna3766|Name=rna3766|organism=Nannochloropsis gaditana|type=mRNA|length=2603bp|location=Sequence derived from alignment at CM002461.1:1173159..1175761- (Nannochloropsis gaditana)
TTTCAATACACTTGCTTGGTAGGAACAGCATGAGACGCGCATCGCCTCGA
GAGGCCTCATGCCCCCCGTCGTCTGCCTGTCCATACTTGTGCCCGAGCGC
GGCTTCCTTGGAAGTAAGGATCGCGCCAGCCGGCGGCGTGAGCCGTCGGC
GGCCTCTCGTGACAGGCGAACGGGACTGTGATGCGCTCACGCAGCATCTA
GAGGATACGGACAGCGCGGTCGCCGACTTCCCGCAGGAGGGGTTCTCCAC
ACCGCTTACCATATCTGGAGAGCGCAACCTTGAAAGCCCGTTTCCCGCGC
CGTCAACACGCTTTCCCCTTCCAACCACTCCCAAGCGAGATTCACGCATC
GTTTTAGCCCCATTGCCACTCGAGCTACCCACGGAGACGCCCTCCGCCGA
GCTAGTTGTCCTAGCGGTTCGCCTCTCTCCCGGTCTCACTCCTCAACCGT
GTACTTGCCTGCTGCCCAACCCTCCGTCGCGGCCTCAGCCCCAGACTTGC
CTGGCTCCCCGTGACAGTAGTAGCCGATGCACTACTCAACATACCACATC
TCAGGAGTCACGGCACCCTTCAAGCGAAGCGTACCTGCTTTTGAAGCAGT
TGACGAAGCCCAGAGACCGCGTTCGACTTTGGTTAGCTCAGGTGCTGCAG
GAGGAGAGCGAAAAGGAGGGGGGTGAGACAACGGTTTATACTCCCGTCGG
TTCAAAAAAAGTGGTGATCAAGGAATCTGATGCCTCCTTCATCCGAGCAT
ACGGGCAACTCTGGGGGGAGGACCCAGTAGCAGAGGCGGGAGCTCTCCTC
CGCATTGGACAGTCGCGGGTTGTCGCGATGGAAGGACAAGCGCACGGCGA
CGAGCATGTCATCGCGGTGGAGACGGTCTTTGAGGGCGCGGGTTCGAGTC
GGGGACTGCTCTTCATGGTAATGCCCTACCTGGTGGGGGAGGAGCTTTTC
TACCGCGTCACCAAAACTGCAGGGCATGAGGGGCTAGGGGAGGACGGAAC
ACGGCCCATATTCCGGCAGATCGTGCAAGGTCTCTTGCACTTGAAGAAGG
CGCATGGAATCCGACATGGTGACGTCTCTCCGGAGAATGTGATGGTGGGG
CCTGATGGGCACGTCACCCTCATCGACCTGGGCATGGCAGAGCGCGTTCC
CTCCCTCCCTCCCTCTCTCCACCCTTCCTCTTCCGTACCCCCTGGAGTGC
TTTTACGAGCTCGCCCCCGGCGTGGGAAGAAGCAGTACATGGCACCAGAG
ATCTTCGAAGAGCGGAACTACGATCCTTACGCCGCAGACGTCTGGGCCCT
CGGAGCCTTGCTCTATGTGTGCTGGACAGGTTGCACCATCTATCGATCTG
TTACTGACGTGCAGTTCGCGGCGTTGAAGGACACTGCGGGGATGGGCGGG
CTGCAAAAGCTGCTGGCAGAGAGGGAACTCTCGGGGAGGACCCGGTCTTT
GTCTGCGGAGGCAAAGGACTTGCTGGGCCGGATGATGGTATGGGATCTTG
GAGAGCGAATGACGCTAGAGGAGGTGGCCGCGCACCCCTGGGTGCTGGCA
TCGGCAAAAGAATGGGAAGCGAAGGAGTGGGACGGACAGGTTGAAGTACC
CTTGCCCCTGTTCAATTCCTCCTCGGTCTCGGCGCCCCCTGTCCTGGCGC
GGAAGGAGATAGCGCAAGGAGGAGGCTTCTCAGCCCTCTCAGCCCTCTCA
GTGGGTAACTGTAAGGAAGATGTGAAGGAGGAGGGAGCTAAGGACGCCGA
GGATATCGTGCATCCCCGTACGTCCTCGTCCACTACGATGTCCACCTATT
CCAAGCAGGTCAGCAACAACAGTGACGACAACAGTGTCAGCTCCCTCCGT
GTCTCGGAGATGGAGAACCTGCGCAACAATTTTAACAACAACAATTACGA
GAGAGAAGTAGACTGGGAAAAGGATTTGGGACATCACTATCGCGACGAGC
AAGACGGAGGCACCTCGAGATCAGCCTCTGTTTCATCCTCCTCCCTCCAG
TCGCGTTGTTCCTCTTTCGCCGGGGACGATGGGAGATCAGGAGGAGAAGG
ACGGGAGACATGGGTCAGTGAAAGGGGCGCCTTCACTCCATCAGATATGG
CCTTCTGGTCGTCGTGATCGTTTTGTGCTTCCCAGTGGACGGTGGGGCAA
ATAGTGCCTGTGGATGGCAGGAGAGAGGTATAGAAAACCGATAGCCTGTC
TGAAAAATGCGCTAGATAGGTATCGAATATGCATCGAAGGTAGGACAAAC
AGAGCATGGACACACATCATCTGTCCGAAATGTGATGCAAATCGTCCAAA
GATGGGGTGGCTACGCATGTCTCCACATCCAGGAGACATTGTTGAGCAAC
ATGTACTTGCGCCTAGACGGCGTGATGAGAGCATGGAACTTAAGTGTGCA
TATTACGCTGTGAAGTAAAAATAGGTCAGATCTAGCTCACAGTATGCAAA
ATATAGCTACAGACATAACGTTACACGTATTGGTGTGCATGTAGTGAGAT
AGGTTCAATAGGCACGCTTCCAGACAAAAGATCCTGTATAAGCGGTGAGA
TGTATGACAGGTCAGTAAGCATCGTCGAAAAGTGAGAATAATCTAAGCTT
TGA

Coding sequence (CDS) from alignment at CM002461.1:1173159..1175761-

>rna3766 ID=rna3766|Name=rna3766|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at CM002461.1:1173159..1175761- (Nannochloropsis gaditana)
ATGAGACGCGCATCGCCTCGAGAGGCCTCATGCCCCCCGTCGTCTGCCTG
TCCATACTTGTGCCCGAGCGCGGCTTCCTTGGAAGTAAGGATCGCGCCAG
CCGGCGGCGTGAGCCGTCGGCGGCCTCTCGTGACAGGCGAACGGGACTGT
GATGCGCTCACGCAGCATCTAGAGGATACGGACAGCGCGGTCGCCGACTT
CCCGCAGGAGGGGTTCTCCACACCGCTTACCATATCTGGAGAGCGCAACC
TTGAAAGCCCGTTTCCCGCGCCGTCAACACGCTTTCCCCTTCCAACCACT
CCCAAGCGAGATTCACGCATCGTTTTAGCCCCATTGCCACTCGAGCTACC
CACGGAGACGCCCTCCGCCGAGCTAGTTGTCCTAGCGGTTCGCCTCTCTC
CCGGTCTCACTCCTCAACCGTGTACTTGCCTGCTGCCCAACCCTCCGTCG
CGGCCTCAGCCCCAGACTTGCCTGGCTCCCCGTGACAGTAGTAGCCGATG
CACTACTCAACATACCACATCTCAGGAGTCACGGCACCCTTCAAGCGAAG
CGTACCTGCTTTTGAAGCAGTTGACGAAGCCCAGAGACCGCGTTCGACTT
TGGTTAGCTCAGGTGCTGCAGGAGGAGAGCGAAAAGGAGGGGGGTGAGAC
AACGGTTTATACTCCCGTCGGTTCAAAAAAAGTGGTGATCAAGGAATCTG
ATGCCTCCTTCATCCGAGCATACGGGCAACTCTGGGGGGAGGACCCAGTA
GCAGAGGCGGGAGCTCTCCTCCGCATTGGACAGTCGCGGGTTGTCGCGAT
GGAAGGACAAGCGCACGGCGACGAGCATGTCATCGCGGTGGAGACGGTCT
TTGAGGGCGCGGGTTCGAGTCGGGGACTGCTCTTCATGGTAATGCCCTAC
CTGGTGGGGGAGGAGCTTTTCTACCGCGTCACCAAAACTGCAGGGCATGA
GGGGCTAGGGGAGGACGGAACACGGCCCATATTCCGGCAGATCGTGCAAG
GTCTCTTGCACTTGAAGAAGGCGCATGGAATCCGACATGGTGACGTCTCT
CCGGAGAATGTGATGGTGGGGCCTGATGGGCACGTCACCCTCATCGACCT
GGGCATGGCAGAGCGCGTTCCCTCCCTCCCTCCCTCTCTCCACCCTTCCT
CTTCCGTACCCCCTGGAGTGCTTTTACGAGCTCGCCCCCGGCGTGGGAAG
AAGCAGTACATGGCACCAGAGATCTTCGAAGAGCGGAACTACGATCCTTA
CGCCGCAGACGTCTGGGCCCTCGGAGCCTTGCTCTATGTGTGCTGGACAG
GTTGCACCATCTATCGATCTGTTACTGACGTGCAGTTCGCGGCGTTGAAG
GACACTGCGGGGATGGGCGGGCTGCAAAAGCTGCTGGCAGAGAGGGAACT
CTCGGGGAGGACCCGGTCTTTGTCTGCGGAGGCAAAGGACTTGCTGGGCC
GGATGATGGTATGGGATCTTGGAGAGCGAATGACGCTAGAGGAGGTGGCC
GCGCACCCCTGGGTGCTGGCATCGGCAAAAGAATGGGAAGCGAAGGAGTG
GGACGGACAGGTTGAAGTACCCTTGCCCCTGTTCAATTCCTCCTCGGTCT
CGGCGCCCCCTGTCCTGGCGCGGAAGGAGATAGCGCAAGGAGGAGGCTTC
TCAGCCCTCTCAGCCCTCTCAGTGGGTAACTGTAAGGAAGATGTGAAGGA
GGAGGGAGCTAAGGACGCCGAGGATATCGTGCATCCCCGTACGTCCTCGT
CCACTACGATGTCCACCTATTCCAAGCAGGTCAGCAACAACAGTGACGAC
AACAGTGTCAGCTCCCTCCGTGTCTCGGAGATGGAGAACCTGCGCAACAA
TTTTAACAACAACAATTACGAGAGAGAAGTAGACTGGGAAAAGGATTTGG
GACATCACTATCGCGACGAGCAAGACGGAGGCACCTCGAGATCAGCCTCT
GTTTCATCCTCCTCCCTCCAGTCGCGTTGTTCCTCTTTCGCCGGGGACGA
TGGGAGATCAGGAGGAGAAGGACGGGAGACATGGGTCAGTGAAAGGGGCG
CCTTCACTCCATCAGATATGGCCTTCTGGTCGTCGTGA

Synonyms

Publications