rna3746, rna3746 (mRNA) Nannochloropsis gaditana

Overview
Namerna3746
Unique Namerna3746
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length789
Alignment locationCM002461.1:1112438..1113940 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101235g1.7076.mrna
Orig protein idgnl|cribi|Naga_101235g1.7076
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1112438..1113940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101235g1gene3609Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3746rna3746-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26936.1cds3737Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3746 ID=rna3746|Name=rna3746|organism=Nannochloropsis gaditana|type=mRNA|length=789bp
CTGCCAGGACATCCTCCTCCTCTTCCTCTTCGTCCTCCTCGTCCAGCGAG
GAGCGCGAAGGAAGCATGGGCGGAGGGGAGGGCGGGGGGGAGGGAGGGTC
CGCGGGGCATTCGTCGGAGCACGGGGAGCGAGAACGCAGCAACTCGAGCA
CTACCTCCTCCTCCACTTCCACCGCCTCGCCCTCCCACCACCGGCTCCAC
CCGCAAAAAGGCTCGGCTGCCACCAGCGAAATGCAACTTGGCGTGGGCCT
CGGTGGCCCGGAGGGGGGGATTGGCAGCCGCAGCGGGAGCCCTCCCCACC
TACCCGGAGGAGAGGGAAGAAGCGGATCGCGGCCCGCCCGCGATGGGAGC
GAAGGGGCGGGGCAAAGGAAGGGGGGGAGGAAGGGGGGGAGGGGGGAGGG
GATCTCCGATACAGGGAGCGAGGAGAACTTTTCCCTCTCGAGCGACTCCG
GCTCGTCGAGCGACAGTGGCGGGGGCGGGTGAGTGGATCGGATCGGATCG
GGTCGGGGCCCGCTTTCTTTTCGCGCGTTTTTTTCCATTTTTTTTTTTCC
TCTCTGTGGGAGTGCGGGTTTCCCCTCTGTCGTCCTCATGTACTTTCCAT
TGCCCTTATATAGCACCCTCACCTGCCCTCCTTACCCTCCCTCCAGGAAC
GGAAAGGTGGACCCCAGCGCCTGCCATCACTCATCGGGAGGGATCAACAG
CCAACGCCAATGCGCGCAGCAGGCCAGCATCAGCACGCAGAAGCAGCAAA
CGCACAATGCAGAGGTGGAGGTGAAAGGAAAAAGCGGGG
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protein sequence of rna3746

>rna3746-protein ID=rna3746-protein|Name=rna3746|organism=Nannochloropsis gaditana|type=polypeptide|length=161bp
KWRPPSEGKAAPPIHSKGAVPPAPPLRPRSLPLSLPPFLPPAWPGKVVCR
WREEKLRAAGQKRASHTKTAAPEPRTEGGQALLPPPSLPPFLLLPPAPQW
IHDGEKGRRRGTRRGGKEEGSCRDRSGTELDAIHGEPSRLPVVLLPSRRG
PGLGVMEVSGR
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mRNA from alignment at CM002461.1:1112438..1113940+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3746 ID=rna3746|Name=rna3746|organism=Nannochloropsis gaditana|type=mRNA|length=1503bp|location=Sequence derived from alignment at CM002461.1:1112438..1113940+ (Nannochloropsis gaditana)
AAGTGGAGGCCTCCATCAGAGGGAAAAGCCGCTCCTCCCATCCACTCAAA
GGGAGCAGTACCGCCGGCGCCACCGTTGCGTCctcgctcgcttcctctct
cccttcctcccttcctgcctccagCGTGGCCTGGGAAGGTGGTTTGtcgt
tggagggaggaaaagttgAGGGCTGCGGGGCAGAAGAGAGCATCGCATAC
AAAGACAGCAGCACCAGAGCCGAgaacggagggcgggcaggcgcttctcc
ctcccccctccctcccccccttcctcctcctaccccctgCTCCACAGTGG
ATCCATGACggtgaaaagggaaggaggaggggaacgaggaggggaggaaa
ggaggaggggagctgCAGAGATCGAAGCGGCACAGAGCTTGATGCGATTC
ATGGCGAGCCCTCTCGGCTCCcggtcgtcctcctcccctcccgacgcGGA
CCCGGACTCGGCGTGATGGAAGTTtctggaaggtgagggggagagaaggc
cgGGCAGTCTCCAGATTAGGCACAAAAAGGCAGGCGCtcttgggaggagg
ggatcggGGAGGCAAATgaaacagggaggaggcgccatGGCGGGGGAGCG
CGGATGGGTATGCTCGGTGATGAGGACCATGCACAGGCGTGAGAAATACT
GTGATGTGTCGAAGCCAAAGAAATGCCAGCCACATTgtagagaagaagga
gaggagggggggggggacgcggagaggggaggaggggaaggagggcgtga
aggaggaagggagggagagagaaaatcAGCCACGCCCTCACAGTTTCATG
CATTTTATACGAAAGTGGAGCCGCGTCTGTGCGTGTACTGTAGTTAGTCA
TCATCCTTGCGTGCAAACTGCGCGCGGCATGTCCGTGGCGGAGGCAGGTG
CCGGTccggtgggaagggaagaaggggtggagaagggggcaggCCGAGTG
TAGTGTAGAATTTGATAGGGCACCATTTTCGCCAGTAATGTTTGTCGTGC
AGCGAGTGCCGCGCGAGCGAAGTGGCGTGGATGTACGTAGAATGGTAGGA
TTAATAAAACTTCCGAACACTTTTTTTAATTGCTCGACTTACGTCGGTGC
GTGGCGCGTTGTTTTGGTTTTGGGGAGGAACGGCTATCAGTATGATTGGC
TTCCGTAAAACTCTGATGCGTGTGCTAAGAATCTGACACGACGCGCTCAC
CCTTGCTTAAGTCATACAAAGCCGTGAAAGACGTCACAGCCATGGCAGTT
CGTTTCATTCAAATTTTAGTCCTTCTGCAAACAACAAAAGTCTCGATAGC
GAGTAAAATTAAGTCAAAGAGGTGCACTGTCTCACACGTAAGAGGAActa
gaagaagggggggaaaatcAAATGAGGGCTCCCTGAAAGCCCCGAGGGAC
ACGCACTACAGCCTCTGAGAGCAGCATGTGGGCTCCGATAAAGAGTAAGA
AAAGTGGTGTGGGACGCatgggagagagaagaataATTAAGCAAACAACT
CCA
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Coding sequence (CDS) from alignment at CM002461.1:1112438..1113940+

>rna3746 ID=rna3746|Name=rna3746|organism=Nannochloropsis gaditana|type=CDS|length=486bp|location=Sequence derived from alignment at CM002461.1:1112438..1113940+ (Nannochloropsis gaditana)
AAGTGGAGGCCTCCATCAGAGGGAAAAGCCGCTCCTCCCATCCACTCAAA
GGGAGCAGTACCGCCGGCGCCACCGTTGCGTCctcgctcgcttcctctct
cccttcctcccttcctgcctccagCGTGGCCTGGGAAGGTGGTTTGtcgt
tggagggaggaaaagttgAGGGCTGCGGGGCAGAAGAGAGCATCGCATAC
AAAGACAGCAGCACCAGAGCCGAgaacggagggcgggcaggcgcttctcc
ctcccccctccctcccccccttcctcctcctaccccctgCTCCACAGTGG
ATCCATGACggtgaaaagggaaggaggaggggaacgaggaggggaggaaa
ggaggaggggagctgCAGAGATCGAAGCGGCACAGAGCTTGATGCGATTC
ATGGCGAGCCCTCTCGGCTCCcggtcgtcctcctcccctcccgacgcGGA
CCCGGACTCGGCGTGATGGAAGTTtctggaaggtga
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Synonyms
Publications