rna374, rna374 (mRNA) Nannochloropsis gaditana

Overview
Namerna374
Unique Namerna374
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2024
Alignment locationCM002455.1:914003..916063 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g116.1776.mrna
Orig protein idgnl|cribi|Naga_100003g116.1776
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:914003..916063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g116gene361Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30259.1cds374Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna374rna374-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna374 ID=rna374|Name=rna374|organism=Nannochloropsis gaditana|type=mRNA|length=2024bp
CATCTGGTCTTGTCGTAAATAGGTTCTCCTGAGCTAGGACGTGGCCCCAC
CACCGTGATGGCTCTTGTGCGGCTTTCTCCTAGCCTGTTATGCAATGCAT
GCTGCGCCTTCCTCCGCTAGGTCTGAGGAAGCAAAGTCAGTGGATGGGAA
ATTACCATGCTTGGCATTGATGGCGCCCAGTATCCTTGCTACTTACGTAC
AACTAAGTGTGTTTGATTTAACGCCTCAAATTCCTTTTTTACAGGGTCAG
TAGCTCGCTCCGACGCCGGGACCGCCGCTCAACATGACCCGTGATCCACC
ACGCGGTGCCCCACCGCCCTTCTCTCTGCCCAAAAATATCGTATCTTCGC
AGACTCATCTTTCTCGTGAAACAACCGCAACTATCTCCCCACCAGCTGAT
AAAGCTGCGTCTGCTCTCATGAGAGCTAGCGAAGCATCCCTTTCTGATCA
TGCAGCCGATAGCCTGAGGCACAACTGTGACATCATAGCTGAAAACGGAC
GAGTCCACGCGACAGAGTGTTCAAGTACAGCACCAGTACTAGTATCCTCA
CATAGTGGAGAGGATGACCCAATGACAGTCTTTGTGGGAAGACTACCTCC
AACGGTCCCGGACCATGTAATCTACACCCTGCTGGAGCAGTGCGGGAAAA
TACTTGAATGGAAGCGAGCTGTGGGTAAAAGTTTCGGCTTCTGCCAATAT
GCGCAGCCGAGCTACGCCAGGCGATGTCTTGAACTGATGAATGGGGTCAA
ATTGGACTGCCAACCGGTTCTCGTCAAATTAGACAACAAGGAGCTTGCGC
GCTTGGTCGAGTTAGCTGTCAGCGAACAGGATGCAGCCCAGGATAAAATC
ACAAAAGAACGATTAACAAGTATCATAGAACAACAACACCTGCGCGTTCA
TGTTGGGGAAGGGGAGGTTCGAGCATCTGCGAAGCGGCAACGGTGTAAAC
ATGGGGCAGAGGAAGAAGGAGGCTGTGGCAGCGGGTGTGGGTCGAGGGCA
GAGCTCTTGACCGGGGGATGGGACCCTTCATCGTCCCTCAGCGGTATGCA
AAAAAATACTGCACATGACTTGCTCGTTTTAGGCGAGCTGGATCGTTTTC
GAACAACCGAGGCAGAGCGTGGTCGTCTGCAGGAGAAACATCGATTACTG
GAGCTTCGGCATCGTGTGGAGGAGCAAGAGCGCTTGGAAATTCGACAAAA
AAAGCGCAGAAATGAGACAGCAGAATTTATTCTAAGAGAGGCAAAGATGA
AGGTCCCGCATAGTGCAGCAGAAGAGACGCGCGAAATTAGCAAAAGTAAA
GCAAGGGACGGTTGCGAAGAAGCGTCCGGGTGCTGCTGCTTAAATGACGA
AAAGATTGGCAGCAATGATGTGACGGGCGCCAAACTGCTTACATATCATT
CTCATGGGTCGCAGTGCCTTCAAAAAAGAGACTGCCAAAGAACGGTTGAT
TTTCCAGGAATATTACGGGAAGTCGATACTTGCGTAATGCTCGATGTCGG
TGAAAGCAATATGAGGACATCATATGACACAAAGCCCCCGGCGGCTGACG
AATTAGGGCCTCTGAAGAAGAATACAGAGCAAAAGCAGGCAAGGAATGAT
CAGAGATGGTCTAAAGACGCTTCTTCGAACGCATCGAGGCATTGTGGCGC
AAACATACGCAAATTCAAGCCATTATGTGAGCGTCAGATGCGACTTGTGA
GCAAAATACCGCAGGATAGAAAAGCCCTTTTAATGTACCCGGTCGATTGG
GTCGCTGTAGATAAAAACAGTCTCGTGTCAAGTAAATTGCGAGCCTGGGT
CGCATCGAAGGTAATAGAACTTCTCGGGGAAGAGGAGAATACTCTAATAG
AGTTTATATGTTCAAAACTTACAAGCCATTGTCATCCCAACAAACTACTT
GCCGAGCTACGCTTGGTTTTTGATGATGAAGCGGATGTTTTCATTGAGAA
GCTCTGGAGAATATTGATATATTACACGATCGAGTGCCAATAAAAATAGA
TAAAATACCTACAATGACGAGATG
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protein sequence of rna374

>rna374-protein ID=rna374-protein|Name=rna374|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MIGTVAGDRNLMHGFDVHGNCGCIAGEACDTIHSEDLEGCVGMRPGHFLP
AWSKSQLSGKGAIQRSAVSAWRFDGQGDRQRSVNGGAIHEIERPVGGEGC
QAKARKCDRRSRSVVVGTGRVVISIQDHESKANKLVYRNRTEVELRCIVM
RAYFTIFLYHVRGILDDRRAVRDPSCIILSYFFGRKDSIVQCPFEQPSGP
LNCFGA
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mRNA from alignment at CM002455.1:914003..916063-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna374 ID=rna374|Name=rna374|organism=Nannochloropsis gaditana|type=mRNA|length=2061bp|location=Sequence derived from alignment at CM002455.1:914003..916063- (Nannochloropsis gaditana)
AAGCGTGCTTGGCTAAACAGCCATCTTGGCCACCATTTTGCGTCTTTCCA
TCGTATATCGTCACACTCACAGTGTCAACTACATTGGTGACAATAGAGCG
ATATTCCATTCCTTCTAACAGCAGACTTAAGTGACCGGGCGTAGTCACGA
ACGCCATAAATCTGTCCTCACCGCTTCCTTGACAATTCGATAAAAGATGA
GAGGACCCTTCCACCGCAGCTATGCTGCTTTTGTTATTCTCGCGAGTCTT
TTGGCATCTAAGTGAGGTAAAATCTGCGAGGGACAAATATAATTGATTTA
GGCGCACGATGCCGTAAAATGCCCTGATGTGGACTAACGTTGGATCTACA
TCTTTATCGACGTCCAGTATACGCCAACCTGAGAGTTTTAGCACGTCTTC
TTTTTGAGAGTCTTCATTGTGCTCGTTTGTACCAGTGTCGTCATCAAGGG
CGCCAAGTCCTAGCACTGAAAATGGCATAGCTGGAGGTGCGATGATTTGC
GTAGGATCGTTAACGTTTTGAACTATAATCTGTTGCTCTGAAGGAAGTGA
CGCGGCAAGTTGACCCTTCTTTGCTGCAAAACATTCTACCACACAAAAGT
CAAAGCCGTCTTCCAGTCCGCTTTCAGTAAACAGTGCGGTGCCGTTCCAC
GTACGATTTGGCCATGTAAAAAAACCAGCGTCAGACATGTAATGGAGCGT
AACACCCACGTCGTAGGGAGGGCTCGATGTCTGCTCCGGTAGTTGGAACG
GCACGGAGTCCAAGGAGCTGACCGTTCCATTCGCGGCAATCGTGTACAAA
GTGCCATGGCGTGGCAAGCGTGTGATCTCAAAGCATATGTCACGGCGTTG
TACGCTTTGGTAGTCTGCACCGAATAATGTGATCGGAGTCAGAGTATGCT
CCTGTACAATTGGCCAAGGGACGGCTGGCAAGGCTACAAGTGAAGGTGTG
ATCAGAATCCTGACGAGGGCAGGAATCGATTGGGTGTTGAAGTCATCGGT
GACCGTGTAAGTGAAGGAATCATTCCCAAGCATACTGTGTGAGGTGGTAT
CCGCGCTGCGACTAGTGCTGTTGTCCTTGGCAGCTTGGGGTAGTGTTTGT
GGACCTGTAAAGAAGTAAGCGACCTGTGCTGGCATCGCAGGGGCGGTCAA
GATCTCATCTCCGACGATCAGAGGCGAGGTAGCATTGGTATCATTTACTC
GATACAGGTAGCCGTGAGTCGGCAGTGAGGCTACTCGAGCTGAAACGATG
CGAAATCCCCCATATGCGAACCCTTCAAGCGCCACAGCCGTAAGCCTGGC
CGCCATTGCCACCAGCGACACATTAGAAGTGTTGTTGGTATGATTGGAAC
CGTTGCCGGCGATAGGAATTTGATGCACGGCTTTGACGTACACGGAAATT
GTGGCTGTATTGCTGGCGAGGCCTGTGACACCATCCACAGCGAAGACCTC
GAAGGTTGTGTAGGTATGAGGCCAGGACACTTCCTTCCAGCCTGGTCTAA
ATCTCAGCTGAGTGGTAAAGGTGCCATTCAAAGAAGCGCCGTTTCCGCGT
GGAGATTCGACGGCCAAGGCGATCGGCAACGATCCGTGAATGGCGGTGCC
ATTCATGAAATAGAGCGTCCCGTTGGCGGGGAGGGTTGCCAAGCAAAGGC
CCGGAAATGTGATCGGCGAAGCCGAAGCGTTGTAGTTGGGACTGGAAGGG
TCGTGATCTCCATCCAGGACCACGAGAGTAAGGCTAACAAGCTCGTCTAC
AGGAACAGGACTGAGGTAGAACTCAGGTGTATCGTAATGCGAGCCTACTT
CACCATTTTCTTGTACCACGTGAGAGGCATCCTGGACGATAGGCGGGCTG
TTCGGGACCCGAGCTGCATAATTCTGAGCTACTTCTTCGGGAGAAAGGAC
TCGATTGTACAATGCCCATTCGAACAACCTTCCGGACCACTCAACTGTTT
CGGTGCTTAAAAATGATGGCTCAGAAAAAAAAAACAAGCGGTCTGTTGCA
TCCCAATACGTGAGTCTGCCATCGAGCGCACTTCGCTGATTCTCACTAGC
ATTGTGAACCC
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Coding sequence (CDS) from alignment at CM002455.1:914003..916063-

>rna374 ID=rna374|Name=rna374|organism=Nannochloropsis gaditana|type=CDS|length=621bp|location=Sequence derived from alignment at CM002455.1:914003..916063- (Nannochloropsis gaditana)
ATGATTGGAACCGTTGCCGGCGATAGGAATTTGATGCACGGCTTTGACGT
ACACGGAAATTGTGGCTGTATTGCTGGCGAGGCCTGTGACACCATCCACA
GCGAAGACCTCGAAGGTTGTGTAGGTATGAGGCCAGGACACTTCCTTCCA
GCCTGGTCTAAATCTCAGCTGAGTGGTAAAGGTGCCATTCAAAGAAGCGC
CGTTTCCGCGTGGAGATTCGACGGCCAAGGCGATCGGCAACGATCCGTGA
ATGGCGGTGCCATTCATGAAATAGAGCGTCCCGTTGGCGGGGAGGGTTGC
CAAGCAAAGGCCCGGAAATGTGATCGGCGAAGCCGAAGCGTTGTAGTTGG
GACTGGAAGGGTCGTGATCTCCATCCAGGACCACGAGAGTAAGGCTAACA
AGCTCGTCTACAGGAACAGGACTGAGGTAGAACTCAGGTGTATCGTAATG
CGAGCCTACTTCACCATTTTCTTGTACCACGTGAGAGGCATCCTGGACGA
TAGGCGGGCTGTTCGGGACCCGAGCTGCATAATTCTGAGCTACTTCTTCG
GGAGAAAGGACTCGATTGTACAATGCCCATTCGAACAACCTTCCGGACCA
CTCAACTGTTTCGGTGCTTAA
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Synonyms
Publications