rna3732, rna3732 (mRNA) Nannochloropsis gaditana

Overview
Namerna3732
Unique Namerna3732
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length606
Alignment locationCM002461.1:1088583..1089924 +

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF303, acetylesterase putative
Orig transcript idgnl|cribi|Naga_100717g1.7479.mrna
Orig protein idgnl|cribi|Naga_100717g1.7479
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1088583..1089924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100717g1gene3596Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3732rna3732-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26950.1cds3723Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3732 ID=rna3732|Name=rna3732|organism=Nannochloropsis gaditana|type=mRNA|length=606bp
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTGCAGTCGTGCACTT
CACGGTCCTCAAGGACGTGGTCCTGCCCCACGCCACGCTGCAGATCGACG
CCTCCCCCGCTCCCTCCGCCCCGTCCTCCCGGTTGGAACTGAGGGTGCAC
GCGGACAATACGGCGCTCTTTGTCTTCGTGGAGGCGATGGGGCACCCCGG
GATTTTCTCGGACAATGCCTTCCACCTTCGGAAAGATGAGGTCAAAAGCA
TCATTTTCACCCCTCGGAACGGCCCGATGTCCGGCGGGAGGGAGGAATTC
CTCGCGAGCCTGCGCGTCCGCTCCTTGTGGGACACGGTGTCGGAGGGAGG
GACGGAGGTCGGGGCAGAGGGAGGGGGGGTGGCAGAAACGAAGCACAAAA
CCGTGGCGGATGCGGACGTGGGGGAGGCGAATCGGGCCATGGTCAGGGGG
GAGGAAAGTGGAGGGAACCGAATGCAAGTGATGCGGTCATCGGCGGGGGT
GGAGGAGGGTCTGGGGGCAGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGGTTCGTAAGTTACGGGGAGGGGCTGAAGATTCCAAAGAA
TTTTGA
back to top

protein sequence of rna3732

>rna3732-protein ID=rna3732-protein|Name=rna3732|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MTRPGQARAPRWISSYIFYRFLLLGVVVVKAADLAPVPPSSIASDAKPAA
SPDPRASEPNTLRLAHTLGSHMVLQQAPLPACLYGSGSPTAYIALRMDQA
LTPVVGTVVDLNGEWAACLPPQGPGGPHTITITGSGGRIVVEDVLFGDVW
LCSGQSNMLMTMSQTLNATAEIAASGREAKGGARLRIMAIARNTSGIPLE
DLSSPPLLPWSVVTPDTLGGPDWEYFSATCFFYGLHLTRHPRLTQIPIGL
IQAAYGSTELKAWSPPEALDSCRPLPSSPSGRAPAPKVREGGTGRTGSDH
SGVPRDARGNATRDAASASAVASPASPMTTATLPPEAPGPVPVDPPLPNV
DTNSSHNDTDQANDRERTRTASLPVSPSTPSLPPARPPSRPP
back to top

mRNA from alignment at CM002461.1:1088583..1089924+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3732 ID=rna3732|Name=rna3732|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp|location=Sequence derived from alignment at CM002461.1:1088583..1089924+ (Nannochloropsis gaditana)
CATGGCACTTGCCGACAACACAGGACTTGCGTTCCCTTTCTCAAAAAGCG
GCTAATGTCTGCTTTGTGAGCATCCAGCCGACTGTTGTTCGCGGAAGTCG
ATCATTTTCGGATGGTTCATCCTCACATGCAACAATACCCTGCCGCTTCA
TATACTAGGAGTCACCATGACCCGGCCGGGACAAGCCCGGGCTCCCCGAT
GGATCTCCAGCTATATATTCTACCGCTTCCTGCTGCTCGGTGTGGTGGTG
GTCAAGGCAGCTGACCTcgcccctgtccctccaTCATCCATTGCCTCGGA
TGCGAAGCCCGCTGCATCTCCCGATCCTAGAGCCTCGGAACCCAACACCC
TCCGACTTGCCCATACCCTCGGCTCGCACATGGTCTTGCAGcaagctcct
ctccctgcctgtCTCTACGGAAGCGGCTCACCCACTGCCTACATTGCTTT
GAGGATGGACCAGGCACTCACGCCCGTCGTCGGCACCGTGGTCGACCTCA
ACGGGGAATGGGCCgcctgcctgcctcctcaagGTCCGGGAGGGCCCCAT
ACCATCACCATCACGGGTAGCGGGGGCCGCATTGTGGTGGAGGATGTCCT
ATTTGGGGACGTGTGGTTGTGTTCGGGTCAAAGCAACATGTTGATGACCA
TGTCGCAGACGCTGAACGCGACGGCGGAGATCGCCgcctcggggagggaa
gcaaagggaggggcgcgccTGCGCATCATGGCGATCGCTCGCAACACCTC
AGGAATCCCCTTGGAGGACTTATCGTCCCCCCCTTTGCTCCCTTGGAGCG
TGGTGACCCCAGACACACTCGGCGGCCCAGACTGGGAATacttctccgcc
acctgtTTTTTTTACGGCCTCCACCTGACCAGGCACCCGCGTTTAACCCA
GATTCCCATAGGGCTCATTCAGGCGGCCTATGGATCGACGGAGCTCAAGG
CCTGGTCCCCCCCCGAGGCGCTCGACTCGTGTCGcccgctgccctcctcc
ccatcgggGAGGGCCCCGGCTCCGAAGgttcgagaaggagggaccGGAAG
GACGGGCTCGGACCACTCAGGCGTCCCACGCGACGCACGAGGCAATGCCA
CGCGCGATGCGGCCTCGGCATCCGCGgtcgcctcgcccgcctcccccatg
aCGACGGCCACATTGCCCCCAGAGGCCCCGGGGCCCGTGCCCGtggaccc
ccccctccccaacgTCGACACCAACAGCAGCCACAATGACACGGACCAAG
CCAACGACAGAGAACGGACCCGCACCGCTTCCCTGCCTGTGTCGCcgtcc
accccttcccttcctcccgcccgccctccctcccgccctcca
back to top

Coding sequence (CDS) from alignment at CM002461.1:1088583..1089924+

>rna3732 ID=rna3732|Name=rna3732|organism=Nannochloropsis gaditana|type=CDS|length=1176bp|location=Sequence derived from alignment at CM002461.1:1088583..1089924+ (Nannochloropsis gaditana)
ATGACCCGGCCGGGACAAGCCCGGGCTCCCCGATGGATCTCCAGCTATAT
ATTCTACCGCTTCCTGCTGCTCGGTGTGGTGGTGGTCAAGGCAGCTGACC
TcgcccctgtccctccaTCATCCATTGCCTCGGATGCGAAGCCCGCTGCA
TCTCCCGATCCTAGAGCCTCGGAACCCAACACCCTCCGACTTGCCCATAC
CCTCGGCTCGCACATGGTCTTGCAGcaagctcctctccctgcctgtCTCT
ACGGAAGCGGCTCACCCACTGCCTACATTGCTTTGAGGATGGACCAGGCA
CTCACGCCCGTCGTCGGCACCGTGGTCGACCTCAACGGGGAATGGGCCgc
ctgcctgcctcctcaagGTCCGGGAGGGCCCCATACCATCACCATCACGG
GTAGCGGGGGCCGCATTGTGGTGGAGGATGTCCTATTTGGGGACGTGTGG
TTGTGTTCGGGTCAAAGCAACATGTTGATGACCATGTCGCAGACGCTGAA
CGCGACGGCGGAGATCGCCgcctcggggagggaagcaaagggaggggcgc
gccTGCGCATCATGGCGATCGCTCGCAACACCTCAGGAATCCCCTTGGAG
GACTTATCGTCCCCCCCTTTGCTCCCTTGGAGCGTGGTGACCCCAGACAC
ACTCGGCGGCCCAGACTGGGAATacttctccgccacctgtTTTTTTTACG
GCCTCCACCTGACCAGGCACCCGCGTTTAACCCAGATTCCCATAGGGCTC
ATTCAGGCGGCCTATGGATCGACGGAGCTCAAGGCCTGGTCCCCCCCCGA
GGCGCTCGACTCGTGTCGcccgctgccctcctccccatcgggGAGGGCCC
CGGCTCCGAAGgttcgagaaggagggaccGGAAGGACGGGCTCGGACCAC
TCAGGCGTCCCACGCGACGCACGAGGCAATGCCACGCGCGATGCGGCCTC
GGCATCCGCGgtcgcctcgcccgcctcccccatgaCGACGGCCACATTGC
CCCCAGAGGCCCCGGGGCCCGTGCCCGtggacccccccctccccaacgTC
GACACCAACAGCAGCCACAATGACACGGACCAAGCCAACGACAGAGAACG
GACCCGCACCGCTTCCCTGCCTGTGTCGCcgtccaccccttcccttcctc
ccgcccgccctccctcccgccctcca
back to top
Synonyms
Publications