rna3729, rna3729 (mRNA) Nannochloropsis gaditana

Overview
Namerna3729
Unique Namerna3729
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length778
Alignment locationCM002461.1:1076302..1077930 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100304g3.3103.mrna
Orig protein idgnl|cribi|Naga_100304g3.3103
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1076302..1077930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100304g3gene3593Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3729rna3729-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26957.1cds3720Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3729 ID=rna3729|Name=rna3729|organism=Nannochloropsis gaditana|type=mRNA|length=778bp
AAGAAGAGTGCAGGTCCACAGTTGCAAACATAACTTCTCACGTCTTTCAT
CCACACCGTCAGGAACTGAGGGAACTTCGTGCCTCGTGAAAAAAATCATC
ATGATGGATCCGAGCATGATGCAGGCGCAGATGGCAGCTTCCACATCCAA
TCCTGAGTCAAACGACCTCAGTTCCCGCTCCCAATTGTTCTCGCCAGCCG
TGGCACACAATGCTCAGATTGTCGAACACGTGCGAGGACTAATGTCGATC
TTTGCCGGGGCCGCGGCTGGAGTGCTAGGGGTGACCGGGATAATACAGGG
AGCCTGTGTCTTTATCATTTTCCACACTTTGACCTCCCTGGGCTTACTGA
CGAAGATAAAATTGACGGGGAAGGTGTCAAATTACCTTCCCACCAAATGG
TACGCGTTCTTGGTGGCAGACGCGGCGAATCATTTGTTGTCATTCCTCTT
GTTTTGGACCATGGGATACACGCTCATCCATATATACTGAGGAAGCAATC
GAAGCTTTATAAAAAGGAATGGAAAAGGGATAACATCGGCGATTGCCCGT
TCAAATGAAACACGGTGCTGCTTTGATTTGTCGCCTTTCATTTACTGTCG
CGTTGCAACGTCTTGCACGTGTTCGCAGTCACTGAATGTCAGGTGTGAAA
ATTCAGGTCATACCACGAACATGTGCATGGCTCGTCTCCAAATGCGAGCC
GCTCAATATCGATGTCAAACGACGAGCTCTGCAACGCTTTTCCCCCCAGA
GAAACGTACAACCTTCTTTCCCTTCAGC
back to top

protein sequence of rna3729

>rna3729-protein ID=rna3729-protein|Name=rna3729|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MRVLLGRDYARSMARKKKEESEQRAARQLDRDQRREALLKELQLLREASR
REKVAKEAEKDSWQLRQKAENAIEEKERTEMVRKVRASIEAQIEKRRASL
YNASAALSREKLYEKSPSTTTK
back to top

mRNA from alignment at CM002461.1:1076302..1077930+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3729 ID=rna3729|Name=rna3729|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp|location=Sequence derived from alignment at CM002461.1:1076302..1077930+ (Nannochloropsis gaditana)
TCGCGACATAATTACGGGCCCATTACAAGCGCGCATGGTCTGGCGTACAT
ATCAACCATATATAGGCATAAACTTGAAATCGAGGTCTCCTACCTAGATC
TCGTGCGTATCCATTGATTTGCTTCTTATCGTTAAACCTCCTAAGGAGCC
CGGTACTACCCTACCCCCGTAAATGCATGCTTCATCCCACTTTCTTCGGT
TTGAGAAAACAGTGATACTTCTCCTCATCGATGGACATTGCTAGCATATC
TAGTCCTTCAGGATCTTCGAAAGCTCTCTCCGCGCCGGCCGATCAGAATA
GTATGGGTAAGACTTTATCTCGCTTTAAGCTTTTTCAAGTGATTATCCAA
ACGCATTTTGTCCACGTACCTGCAGACTGGTGCGAATGATCTTTGAAACA
TACGTGTCTCAAAGGTAAACATCCCTCTTACAAAAGAAATCAAGAAACAG
AAGGAAGATAAGACCTGGGAGCACGCATGGGAGATGAAGCGCGTGCTGAG
AATGACGGTACGTGTTGGAAGTCACAAGAACAAACTATCAATAGTTAAAA
TAATCATGAGCAACCTAACACCACTTGCAACGTGTGAGCTGCTGGATAAA
ATTTAGAGAAGATGTTAGCACGACAAGACAGATAGTCTGCCGCGCTTTTT
CTCCACGTACTTATATGATGCCGTATTCCTAAATACCCATGCCCGTTGAA
TTTCCGGGCTTGGTAGGAGGAGCTtatagaggaggaagagataaAAAGTG
CTTACGAGGCGCATAAACAGCTTGAGGTGACCAAGAAAGAAGCAAATCAA
CGCAAAAAACTCGATAAAGCAGAGGTATTCCAAGCGAAAATTGAAGCACT
ACGCTGCgtcaaaaaagagaaagaaagggaggtaaGCGTCCAAATCTGTC
CAACTCTTTTGAAACTCTGACAAAGCGTGACTACATCTAGCCTACTGAAA
GGCAGCCACAAGTACTCAAAACCCCGGCTTTCTCCAACGTGTACCTTGGA
TCCCCGCAGGAAAAATCGatgcgcgtcctcctcggccgggACTATGCCCG
TTCCATGGCCcgcaagaagaaagaggaatcCGAACAGCGAGCGGCGCGCC
AGCTCGACCGAGACCAACGGCGCGAGGCCCTGCTCAAAGAGCTACAACTG
CTGCGAGAGGCGTCTAGGCGCGAAAAAGTCGCCAAAGAGGCTGAGAAAGA
TTCGTGGCAGCTGCGTCAGAAGGCTGAAAATGCCatcgaagaaaaagaga
ggacggagatggTGCGCAAAGTACGAGCGTCCATAGAAGCACAGATAGAA
AAACGACGCGCCTCGCTCTACAACGCGTCTGCCGCGTTGAGCCGGGAAAA
ATTGTACGAAAAGAGTCCCTCCACAACAACTAAATAAGAAGGGCAAAAGG
TTTCGGCAGAGTAAGCAATCAGGGATGTAAAATTTTACACCGAACTTTTA
CCTACCGGTGAGAGCGACGATACGCTTAATGTGACAGGAAATGGCAGCAG
CCCAACGGGCAATTTATActgaagagaaagaggaacaGCAGCCCccaggg
gtggggggaagaatGTAAATCGTGTCTATAGGCGTGGTAGAAGATTTGTT
TTGTCCGTTGCAAATTTAGCTTTTCAACC
back to top

Coding sequence (CDS) from alignment at CM002461.1:1076302..1077930+

>rna3729 ID=rna3729|Name=rna3729|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at CM002461.1:1076302..1077930+ (Nannochloropsis gaditana)
atgcgcgtcctcctcggccgggACTATGCCCGTTCCATGGCCcgcaagaa
gaaagaggaatcCGAACAGCGAGCGGCGCGCCAGCTCGACCGAGACCAAC
GGCGCGAGGCCCTGCTCAAAGAGCTACAACTGCTGCGAGAGGCGTCTAGG
CGCGAAAAAGTCGCCAAAGAGGCTGAGAAAGATTCGTGGCAGCTGCGTCA
GAAGGCTGAAAATGCCatcgaagaaaaagagaggacggagatggTGCGCA
AAGTACGAGCGTCCATAGAAGCACAGATAGAAAAACGACGCGCCTCGCTC
TACAACGCGTCTGCCGCGTTGAGCCGGGAAAAATTGTACGAAAAGAGTCC
CTCCACAACAACTAAATAA
back to top
Synonyms
Publications