rna372, rna372 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna372
Unique Name	rna372
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1476
Alignment location	CM002455.1:905251..906774 +

Link to JBrowse

Properties


Property Name	Value
Product	alpha beta hydrolase fold protein
Orig transcript id	gnl\|cribi\|Naga_100003g118.1835.mrna
Orig protein id	gnl\|cribi\|Naga_100003g118.1835
Gene	Alpha/beta
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:905251..906774 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Alpha/beta	gene359	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna372	rna372-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30318.1	cds372	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:905251..906774+
coding sequence from alignment at CM002455.1:905251..906774+

mRNA sequence

>rna372 ID=rna372|Name=rna372|organism=Nannochloropsis gaditana|type=mRNA|length=1476bp
ATGCCGCAAGAGACAAAGCATATAAATTTTCTTTGGTGCTCTCTTGCAGG
GCTGCGGTGCCTCCGCGTCGTACCCGTACATACAATGTACGACAAAAAAA
GGGTCGACCAATATGCTGACATAGATGAGAACGGCTATTTAAAATGGCTC
CCAAAGCCCATGCCGTCTGTGTCTTTGAGCCGTGCGTGTATTTCGCTTCC
AGCACACGAAGATACTCCAAGCCCTGATAGTGGTGTTCCCTTTGTAGGAG
ACATATGTTTACAATTGGAGGATCCTATGAGCAACCTGATGTGCCTCCCG
TGGCGACCTAAGCATTTTATGGGGGCTGTTCGCATGCTCGATCCCATCTC
CCATGCTCCATGGTCTCTCTGCCCACGCAGCTGTCTCGCTCGTATTTTGG
AGAAAGCTCAGGCCCGACACGGTATATCCTTCCGAGTAGGATTCGAATTA
GAATTTGCCCTCGCCACAATTGACGGGAAGTTTGATGACAGGCATACCTA
TTCATCCGCTAGAGGTTTCGACGTGGAATCGTCCCTCCTGGACGATTTGT
GTGACACTCTGTATTCAATGGGAATAGTTGTGGAACAACTTCATAAGGAG
AGTGCCCCCGGACAGTTTGAGTTGGTGCTTGGTCATTTGCCTGCCATGGA
GGCCGTCGACGGACTGCTACTTGCACGTGAAGCCGTGGCGGCAGTCGCGT
ATCGTCACCAGCGACGTGTCACCCTCTTGCCCAAGTTTCTGCCAGAGTAC
GCTGGCAATGGCTGCCATGTTCATTTGAGTTTATGGAAAAATGGAATCAA
CATTCTTTCGCTTTCTGGAGCGACGATTCGTCCAGGATCCCTCGACGGTG
TGCTAGATATGTACACTACATTGAGTGGTTTTTCATCACTTAATGAAACT
TTCCGCCAATTTCTGGGCGGTCTTGTAGCTCTACTTCCTGCACTTATGTG
CTTCACAACCCCGACTCCGAATTCTTTCAGGCGACTGCAGCCCGGGGCTT
GGGCAGGGGCATTTCAGGGCTGGGGAATCGCTAATAAGGAGGTGCCGCTC
CGTTTGCCCGTACAAACACTTGAAGACGGGCTTTTTACTAATGTTGAGGT
CAAGTTATGTGATTCGACTGCAAATCCCCATATAGCTCTAGCAGCAATTC
TAAGTGCCGGCCTGGTCGGAGTAGATTTGGCTGCAACGTTATCCGAGGCA
GATTTCGCGGAGTCCTTCGCAGCTCTCCCCGCACCGCTGGATGTAGACCC
GGGACAGCTGACATATGCCGAGCGGACTCGCCGTAAGATAAAAGAGTTGC
CTCGGGAATGGTCAACGGCTAAAGCATGTCTAATGAGTCCAGAGGGAAAA
GGACTCCGAGAGTTATTGGGAGAGGACATGGTCAGAGCTTGCGTAGCGAT
TCGCGAAAGCGAGTGGGCAGCTTTGGGGGGTATACGGCTTGAGGAAGAAA
TCGATCTACTCTTTGACCGATACTAG

protein sequence of rna372

>rna372-protein ID=rna372-protein|Name=rna372|organism=Nannochloropsis gaditana|type=polypeptide|length=458bp
MLLRGKQAYLKPLFVGCFLLPRLASTPLAFLRSMSPASKHLRNESRILSP
PTTHRYDGTDKYSRACNQACHEEGPRLSEASTRQVVLSTFPARPFEPLPW
VTNEHWQTIWGARVIQDTMLKKFASESLPKGWQDVYDRRERWDTPDGDFF
HVDFLFSHVPPSGPPSQPRPMAIVLHGLESTSWAILPRSMAKAFARRGFD
VLALNFRGCCGTENLKAYSYHLGFTDDLKFAIQRLFAEEPRRRIYLTGFS
LGGNVILKCLGELGEEAASMGVQGAAVACVPFDAVRSSSKIDTGFNRWVY
AANFLSTLKVKAAKKYETHQRHREGKGVDKELYDLDRVLACSTIGDFDDE
VVAKLHNFEDKIDYYRQSCSKQYLPLVRIPALVINARDDPFINEAGLPTP
EDVGDGTVRLIYHSYGGHCGFLTGQEKTSHEDERWLPTELARFLEHVDRP
FREAKCES

mRNA from alignment at CM002455.1:905251..906774+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna372 ID=rna372|Name=rna372|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp|location=Sequence derived from alignment at CM002455.1:905251..906774+ (Nannochloropsis gaditana)
ATGCTTTTgagaggaaagcaggcaTACCTGAAGCCGCTTTTTGTCGGCTG
CTTCTTACTACCTCGCCTCGCTTCCACGCCGCTGGCATTTTTGAGGTCCA
TGTCACCAGCCAGCAAGCATCTCAGAAATGAGTCCCGCATTCTGTCTCCG
CCCACAACGCATAGATATGGTAAGTGTTTACCTAATAAAAGCGGCCGCGA
TATAGTGTCGGAAAGGTCTAAATTGCAGGAAGGATGGCAGTGGAAAATTT
ACACGCCCATTCTCTCCTGCACTTTGATTCCAACTGATTCTTCATCTATT
CGTTCTCGATTTGAAGATGGTACGGATAAGTATTCAAGAGCATGCAATCA
AGCGTGCCACGAAGAGGGACCTCGCCTGTCAGAAGCATCTACAAGACAAG
TGGTCCTTTCCACCTTTCCTGCACGACCCTTCGAGCCTTTGCCTTGGGTC
ACAAATGAGCACTGGCAAACAATATGGGGCGCCAGAGTTATTCAAGATAC
GATGCTTAAGAAATTTGCTTCTGAGTCCCTGCCGAAGGGATGGCAGGACG
TGTACGACAGGCGGGAGCGGTGGGATACGCCCGACGGAGATTTCTTTCAT
GTGGACTTTCTTTTTAGTCACGTGCCTCCTtcgggccctccctcacaaCC
TCGACCTATGGCTATTGTACTACACGGACTAGAATCTACTTCCTGGGCAA
TCCTACCCAGATCAATGGCAAAAGCCTTTGCGCGACGGGGCTTTGATGTC
CTAGCTCTCAATTTCCGTGGTTGCTGCGGCACGGAGAATCTTAAAGCTTA
CTCATATCACTTGGGTTTTACAGATGACCTGAAATTTGCCATTCAGCGCT
TGTTTGCTGAGGAGCCGCGACGCCGCATATACCTCACCGGCTTCTCTCTG
GGAGGGAATGTGATCCTTAAGTGCCTGGGAGAGCtcggggaagaagcagc
aaGCATGGGTGTACAGGGGGCTGCCGTCGCATGTGTGCCCTTTGATGCCG
TGCGATCTTCCAGCAAAATCGACACCGGCTTCAATCGTTGGGTGTACGCG
GCCAACTTTCTGTCAACATTGAAGGTGAAAGCAGCAAAAAAATATGAGAC
ACATCAACGGCaccgggaagggaaaggagtggaCAAGGAGCTGTATGACC
TGGATCGGGTTTTGGCCTGCTCCACCATAGGCGATTTTGACGACGAGGTT
GTTGCGAAGTTGCACAATTTTGAGGATAAAATAGATTATTATCGACAGAG
CTGTTCAAAGCAGTACCTTCCATTAGTACGGATTCCCGCATTGGTCATTA
ACGCCCGGGATGATCCATTCATCAATGAAGCGGGATTACCTACCCCGGAA
GACGTCGGAGATGGGACGGTTCGCTTGATTTACCACAGCTATGGAGGACA
TTGCGGTTTTCTCACAGGACAGGAAAAAACGAGCCATGAGGACGAGCGGT
GGCTACCCACGGAGCTCGCACGATTTTTAGAACATGTAGATCGACCATTC
CGCGAAGCGAAATGTGAAAGTTGA

Coding sequence (CDS) from alignment at CM002455.1:905251..906774+

>rna372 ID=rna372|Name=rna372|organism=Nannochloropsis gaditana|type=CDS|length=2754bp|location=Sequence derived from alignment at CM002455.1:905251..906774+ (Nannochloropsis gaditana)
ATGCTTTTgagaggaaagcaggcaTACCTGAAGCCGCTTTTTGTCGGCTG
CTTCTTACTACCTCGCCTCGCTTCCACGCCGCTGGCATTTTTGAGGTCCA
TGTCACCAGCCAGCAAGCATCTCAGAAATGAGTCCCGCATTCTGTCTCCG
CCCACAACGCATAGATATGATGGTACGGATAAGTATTCAAGAGCATGCAA
TCAAGCGTGCCACGAAGAGGGACCTCGCCTGTCAGAAGCATCTACAAGAC
AAGTGGTCCTTTCCACCTTTCCTGCACGACCCTTCGAGCCTTTGCCTTGG
GTCACAAATGAGCACTGGCAAACAATATGGGGCGCCAGAGTTATTCAAGA
TACGATGCTTAAGAAATTTGCTTCTGAGTCCCTGCCGAAGGGATGGCAGG
ACGTGTACGACAGGCGGGAGCGGTGGGATACGCCCGACGGAGATTTCTTT
CATGTGGACTTTCTTTTTAGTCACGTGCCTCCTtcgggccctccctcaca
aCCTCGACCTATGGCTATTGTACTACACGGACTAGAATCTACTTCCTGGG
CAATCCTACCCAGATCAATGGCAAAAGCCTTTGCGCGACGGGGCTTTGAT
GTCCTAGCTCTCAATTTCCGTGGTTGCTGCGGCACGGAGAATCTTAAAGC
TTACTCATATCACTTGGGTTTTACAGATGACCTGAAATTTGCCATTCAGC
GCTTGTTTGCTGAGGAGCCGCGACGCCGCATATACCTCACCGGCTTCTCT
CTGGGAGGGAATGTGATCCTTAAGTGCCTGGGAGAGCtcggggaagaagc
agcaaGCATGGGTGTACAGGGGGCTGCCGTCGCATGTGTGCCCTTTGATG
CCGTGCGATCTTCCAGCAAAATCGACACCGGCTTCAATCGTTGGGTGTAC
GCGGCCAACTTTCTGTCAACATTGAAGGTGAAAGCAGCAAAAAAATATGA
GACACATCAACGGCaccgggaagggaaaggagtggaCAAGGAGCTGTATG
ACCTGGATCGGGTTTTGGCCTGCTCCACCATAGGCGATTTTGACGACGAG
GTTGTTGCGAAGTTGCACAATTTTGAGGATAAAATAGATTATTATCGACA
GAGCTGTTCAAAGCAGTACCTTCCATTAGTACGGATTCCCGCATTGGTCA
TTAACGCCCGGGATGATCCATTCATCAATGAAGCGGGATTACCTACCCCG
GAAGACGTCGGAGATGGGACGGTTCGCTTGATTTACCACAGCTATGGAGG
ACATTGCGGTTTTCTCACAGGACAGGAAAAAACGAGCCATGAGGACGAGC
GGTGGCTACCCACGGAGCTCGCACGATTTTTAGAACATGTAGATCGACCA
TTCCGCGAAGCGAAATGTGAAAGTTGAATGCTTTTgagaggaaagcaggc
aTACCTGAAGCCGCTTTTTGTCGGCTGCTTCTTACTACCTCGCCTCGCTT
CCACGCCGCTGGCATTTTTGAGGTCCATGTCACCAGCCAGCAAGCATCTC
AGAAATGAGTCCCGCATTCTGTCTCCGCCCACAACGCATAGATATGATGG
TACGGATAAGTATTCAAGAGCATGCAATCAAGCGTGCCACGAAGAGGGAC
CTCGCCTGTCAGAAGCATCTACAAGACAAGTGGTCCTTTCCACCTTTCCT
GCACGACCCTTCGAGCCTTTGCCTTGGGTCACAAATGAGCACTGGCAAAC
AATATGGGGCGCCAGAGTTATTCAAGATACGATGCTTAAGAAATTTGCTT
CTGAGTCCCTGCCGAAGGGATGGCAGGACGTGTACGACAGGCGGGAGCGG
TGGGATACGCCCGACGGAGATTTCTTTCATGTGGACTTTCTTTTTAGTCA
CGTGCCTCCTtcgggccctccctcacaaCCTCGACCTATGGCTATTGTAC
TACACGGACTAGAATCTACTTCCTGGGCAATCCTACCCAGATCAATGGCA
AAAGCCTTTGCGCGACGGGGCTTTGATGTCCTAGCTCTCAATTTCCGTGG
TTGCTGCGGCACGGAGAATCTTAAAGCTTACTCATATCACTTGGGTTTTA
CAGATGACCTGAAATTTGCCATTCAGCGCTTGTTTGCTGAGGAGCCGCGA
CGCCGCATATACCTCACCGGCTTCTCTCTGGGAGGGAATGTGATCCTTAA
GTGCCTGGGAGAGCtcggggaagaagcagcaaGCATGGGTGTACAGGGGG
CTGCCGTCGCATGTGTGCCCTTTGATGCCGTGCGATCTTCCAGCAAAATC
GACACCGGCTTCAATCGTTGGGTGTACGCGGCCAACTTTCTGTCAACATT
GAAGGTGAAAGCAGCAAAAAAATATGAGACACATCAACGGCaccgggaag
ggaaaggagtggaCAAGGAGCTGTATGACCTGGATCGGGTTTTGGCCTGC
TCCACCATAGGCGATTTTGACGACGAGGTTGTTGCGAAGTTGCACAATTT
TGAGGATAAAATAGATTATTATCGACAGAGCTGTTCAAAGCAGTACCTTC
CATTAGTACGGATTCCCGCATTGGTCATTAACGCCCGGGATGATCCATTC
ATCAATGAAGCGGGATTACCTACCCCGGAAGACGTCGGAGATGGGACGGT
TCGCTTGATTTACCACAGCTATGGAGGACATTGCGGTTTTCTCACAGGAC
AGGAAAAAACGAGCCATGAGGACGAGCGGTGGCTACCCACGGAGCTCGCA
CGATTTTTAGAACATGTAGATCGACCATTCCGCGAAGCGAAATGTGAAAG
TTGA

Synonyms

Publications