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Properties
| Property Name | Value |
|---|
| Product | mitochondrial 28s ribosomal s29-like protein |
| Orig transcript id | gnl|cribi|Naga_100392g1.5849.mrna |
| Orig protein id | gnl|cribi|Naga_100392g1.5849 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:1046124..1048770 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3717 ID=rna3717|Name=rna3717|organism=Nannochloropsis gaditana|type=mRNA|length=1143bp
ATGAAACAGACGACCATGCTACCGCTGTCTTTGGTCTGTAGGGCGAATTG
CCTGGTACTGGGACTCTTGCTTCTTCTGGCGGCCACCCATGCTTTTCGGT
TGAAGGGCCTCCCCAGCACGACACGACAAACAAGCAAGCTGCTCCTACAC
CCATCTCCGCACCAAACCCTCATTACAGGGCAGCCATCACGCCCCACGCG
CATAACGATAGCTTATCTTTCGTCATTTGCGCGGCGGGTGGCCCCATCCA
GGTCCATGGTCGTGGCGGCTTCGGGGACAGAGTACTTGGACAACCTCCCC
TCCCGCGCGTCGAAGAAAGGACCCCCTATGCAGTGGGGTGCCCTAGGCAC
TTGGATACTGGCCACTGCCTTACAATTTGCGACAATTGTAGCCTTTATGT
ACGGGATGGAAAAGGCGTTCCTGAGATTCAACTTGTCGAAGCAAGCAAGC
ATTTGGCTCGTCCGGGCGTTTTTCGCCTTCATGAGCTTGAGATCGCGAGT
CTTCTCCATCCTCGATAACTCCCGCCCCACGGTGGCCATGGAGGACAGGA
AACGCAGGCTTCGCAAACGCCCTTCCTGGATGCCACCTGCCAAAGCCTTT
CCCGTCATTTGGATTTCCATTGGTGTCCTTCGTACTATTGCCTCCTCCCT
TGTGTACGAGACGACCAATACTCTCCTCTCCCCCGCTCTCCTCGCCTTCG
TCTTGCACCTGTGCGTCCGTTCCTGGGGTGTTTTTGGTCTGGCTTTCGGT
CGTGAATGCGGTCAGGATGTATGCACATACCCTGCCCTTGGCAGGGAAAG
TGCTAGCGCCCAGTGCCGTGTGGATTACGATCGCGAACGTGTTGGTCATC
TCGATATGGAGGCTGAATGGAGCAGAGCCTTTGTATCCGTTCAAAAAACG
GCGGGAATGAAACGTAATGCCTGTCTTGTGACTTATCGGTCAGTGGGGGC
GAGGGTGTGCTCGGAGCATGCGCCGTTTGATCTTGGTGGTATATTGAGTG
TGTTAGAGAGGGCATCGAGGTATAAATTTGTGATGGAGTACAACAAACGC
TCCATAAGAAAAACGATAAGAAGCAGCTCATTTATAAATTCGGAACGAAA
TAATCAGAGCATAGCAAGCAAGAGGGATTATTGCGGCGATTAG back to topprotein sequence of rna3717 >rna3717-protein ID=rna3717-protein|Name=rna3717|organism=Nannochloropsis gaditana|type=polypeptide|length=762bp
MFMLLSAQVLGVSWCVLVMKRLLCCRSGGSRGSTVACQVSALKPIPARQP
LPPSISAAAFARSSFFLSSLPSRTFTTKSTDEDQVKPPRATGGKYKARAM
GKRSAALTDSGIDDALEKELLYLDTSSLVLPPGTQTEGMTVEEMQTLADA
YALQMQEKANREGDVEEGHYPEVTSERLDPTMVYAPSDDPRHHVEEGAMG
KIYTLSEEEVKRYFPGPWRRPSRVPWLTDLQAVLTRRYLLVRPQAVEVMQ
GLGSFAGKGREQGRFGGMERVEALRNDWEEKGGFDGAFARAKRGEGGEVR
PSVAPTPPLGKVADEEERGEGEEGAVDGERVDDDDDDEYDLFGGEEDDEE
RLRAGLGGADGGGSAYEARKTDWDQYGTLKQLAVDDSSLVHPEQRLELPV
PAVPTEGGREGGREGGVRSIFLLSGPRGSGKTATLYHAVHYARRSGWVVF
FVPSAFEYLHEGGLIRPSPFYRGYFDTPDLAQTTLRQLGEAHGHQFASLP
YTAPRGLESLELSGEYTCWDLMALGLSQRKWATTCLLELKRALENQDAYP
VLFAVDEVSEWFYPSSYFYARKKIEASRLAVVASLRGLLPFPPSGPGYGK
HHQRFAFLAAYSHRYPRRSYKKASKGAEGRKRRGDLPPYPLPRFLAPYDV
PLPPTYSPTEFQVLYNFVADQGLWGPQPSFTSAALRQARMISAGHPGTFA
KDAVVLERRLFAPQNRVGKASACAPANFMLADLLEDEEAGEGGAEGGEEH
RASDAQHVAQQM back to topmRNA from alignment at CM002461.1:1046124..1048770+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3717 ID=rna3717|Name=rna3717|organism=Nannochloropsis gaditana|type=mRNA|length=2647bp|location=Sequence derived from alignment at CM002461.1:1046124..1048770+ (Nannochloropsis gaditana)
AGCCTATTAAGAGCTTTGGCTGATTTTGAAACCCCTACCTCATGTTCATG
TTGCTATCTGCACAGGTACTGGGGGTGAGTTGGTGTGTTTTGGTCATGAA
ACGTTTGCTTTGCTgcaggagcggggggagccGTGGAAGCACCGTGGCCT
GTCAGGTTTCCGCTTTAAAGCCAATTCCTGCGCGACAGGTAAGTTATGAT
TTTCTAAACACCTTTTTGGTGCACATGTGTCTAGGGCGAACTCTTTTCTG
CTTTATTTATTCATGCGCGGTGTGTTGTACACCTATGACAACCAAGGGTG
TGCCGCCGCAGGCTTATGCCTCCTCATGTAGCTATCACTCCCGCTCTCCC
ACTGATGATTGACGAATTTAGCCACATATTGCATGCCATCTTAAAGTTAT
GAAGCGGTGTTACTTCTGCATCAATCTAGGATGTATTTCTCTTTTCTAAT
CATCCTCTTCTGTATCCACACTTCCCTTTCACTCGGTGGCAGCCCCTACC
GCCGTCGATCTCTGCTGCGGCCTTTgcgcgctcctccttcttcctctctt
ctctcccatcccGCACTTTCACGACGAAATCTACCGATGAAGATCAGGTC
AAGCCTCCTCGGGCGACCGGTGGCAAGTACAAAGCAAGAGCCATGGGCAA
ACGATCGGCTGCCCTGACAGATTCAGGGATAGATGATGCCCTGGAGAAAG
AATTACTCTATCTTGACACGTCGTCCCTGGTCCTACCCCCCGGAACGCAG
ACGGAAGGGATGactgtggaggagatgcagaCGTTGGCGGACGCCTACGC
CCTTCAAATGCAAGAAAAAGCGAaccgggagggggacgtggaggagggcc
attACCCGGAAGTTACGTCGGAGCGGTTGGACCCTACCATGGTCTATGCC
CCCTCTGACGACCCTCGGCAccacgtggaggagggagcgatggggAAAAT
TTACACgctgagcgaggaggaagtcaaGCGGTATTTCccggggccttgga
ggcggccTAGCCGCGTCCCCTGGCTCACGGACTTACAAGCCGTGCTGACC
CGACGCTACCTGTTAGTACGGccgcaggcggtggaggtgatgCAAGGATT
GGGAAGCTTcgcaggaaaagggcgggagcagggTCGGTTCGGGGGCATGG
AAAGGGTGGAGGCCTTGCGGAACgactgggaggagaaaggcgggTTTGAC
GGGGCCTTTGCGCGGGctaagaggggggaagggggggaggtcaggCCGTC
AGTGGCACCGACGCCCCCTCTCGGGAAAGTtgcggacgaagaggaacgtg
gagaaggggaagaaggcgcggtggatggggaaagggtggacgacgacgac
gacgacgaatACGATTTGttcggtggggaggaggatgacgaggagaggcT
ACGGgcggggttggggggggccGACGGGGGAGGCTCTGCCTACGAGGCAC
GAAAGACGGACTGGGACCAGTACGGGACTCTGAAGCAATTGGCCGTGGAC
GATTCGTCCCTGGTCCATCCGGAGCAACGTTTGGAACTGCCCGTGCCGGC
GGTGCcgaccgagggcgggagggagggcgggagggagggcggggtccgGT
CCATCTTTCTCCTGTCGGGCCCCAGGGGCTCGGGGAAGACCGCGACCTTG
TACCATGCCGTCCATTACGCACGGCGGTCTGGTTGGGTGGTGTTTTTCGT
CCCGTCGGCCTTCGAATACCTTCACGAAGGGGGCTTgatccgtccttccc
ctttctatCGGGGCTACTTCGACACCCCCGACTTGGCGCAAACGACCTTG
CGGCAACTCGGCGAAGCGCACGGACATCAATTTGCCTCCCTGCCGTACAC
CGCGCCTCGGGGTTTGGAAAGCTTGGAGTTGTCGGGCGAGTACACCTGCT
GGGACCTGATGGCTTTGGGGTTGAGTCAGCGGAAATGGGCCACCACCTGC
CTGCTCGAGTTGAAACGGGCCTTGGAGAACCAGGACGCGTACCCGGTGCT
CTtcgcggtggacgaggtctCGGAATGGTTCTACCCTTCCTCGTATTTCT
ACGCGCGGAAAAAAATCGAGGCTTCCCGCTTGGCAGTGGTGGCCtccctc
cgaggcctcctccccttccctccctccggcccagGGTACGGGAAACATCA
CCAACGttttgctttcttggcgGCATATTCCCATCGGTACCCGCGGCGTT
CCTACAAAAAAGCCAGCAAGGGAGCCGAAGGACGAAAACGACGCGGAGAC
CTTCCCCcttatcccctcccccgcttcctcgcaCCCTACGACGTGCCCCT
ACCCCCTACCTATTCCCCCACTGAATTCCAAGTTTTGTACAACTTTGTCG
CCGATCAGGGGCTCTGGGGACCTCAACCGTCCTTCACCAGCGCCGCCCTG
CGACAGGCTCGGATGATCTCGGCGGGACATCCGGGTACCTTTGCGAAGGA
CGCGGTGGTTTTGGAACGTCGACTGTTTGCTCCGCAAAACCGGGTGGGGA
AAGCCTCGGCATGCGCACCCGCCAATTTCATGCTGGCGGATCtgttggag
gacgaggaagcgggggagggaggggcggagggaggggaggagcaccgAGC
TTCCGATGCGCAGCATGTGGCCCAGCAgatgtgagggagggacggag back to topCoding sequence (CDS) from alignment at CM002461.1:1046124..1048770+ >rna3717 ID=rna3717|Name=rna3717|organism=Nannochloropsis gaditana|type=CDS|length=4578bp|location=Sequence derived from alignment at CM002461.1:1046124..1048770+ (Nannochloropsis gaditana)
ATGTTCATGTTGCTATCTGCACAGGTACTGGGGGTGAGTTGGTGTGTTTT
GGTCATGAAACGTTTGCTTTGCTgcaggagcggggggagccGTGGAAGCA
CCGTGGCCTGTCAGGTTTCCGCTTTAAAGCCAATTCCTGCGCGACAGCCC
CTACCGCCGTCGATCTCTGCTGCGGCCTTTgcgcgctcctccttcttcct
ctcttctctcccatcccGCACTTTCACGACGAAATCTACCGATGAAGATC
AGGTCAAGCCTCCTCGGGCGACCGGTGGCAAGTACAAAGCAAGAGCCATG
GGCAAACGATCGGCTGCCCTGACAGATTCAGGGATAGATGATGCCCTGGA
GAAAGAATTACTCTATCTTGACACGTCGTCCCTGGTCCTACCCCCCGGAA
CGCAGACGGAAGGGATGactgtggaggagatgcagaCGTTGGCGGACGCC
TACGCCCTTCAAATGCAAGAAAAAGCGAaccgggagggggacgtggagga
gggccattACCCGGAAGTTACGTCGGAGCGGTTGGACCCTACCATGGTCT
ATGCCCCCTCTGACGACCCTCGGCAccacgtggaggagggagcgatgggg
AAAATTTACACgctgagcgaggaggaagtcaaGCGGTATTTCccggggcc
ttggaggcggccTAGCCGCGTCCCCTGGCTCACGGACTTACAAGCCGTGC
TGACCCGACGCTACCTGTTAGTACGGccgcaggcggtggaggtgatgCAA
GGATTGGGAAGCTTcgcaggaaaagggcgggagcagggTCGGTTCGGGGG
CATGGAAAGGGTGGAGGCCTTGCGGAACgactgggaggagaaaggcgggT
TTGACGGGGCCTTTGCGCGGGctaagaggggggaagggggggaggtcagg
CCGTCAGTGGCACCGACGCCCCCTCTCGGGAAAGTtgcggacgaagagga
acgtggagaaggggaagaaggcgcggtggatggggaaagggtggacgacg
acgacgacgacgaatACGATTTGttcggtggggaggaggatgacgaggag
aggcTACGGgcggggttggggggggccGACGGGGGAGGCTCTGCCTACGA
GGCACGAAAGACGGACTGGGACCAGTACGGGACTCTGAAGCAATTGGCCG
TGGACGATTCGTCCCTGGTCCATCCGGAGCAACGTTTGGAACTGCCCGTG
CCGGCGGTGCcgaccgagggcgggagggagggcgggagggagggcggggt
ccgGTCCATCTTTCTCCTGTCGGGCCCCAGGGGCTCGGGGAAGACCGCGA
CCTTGTACCATGCCGTCCATTACGCACGGCGGTCTGGTTGGGTGGTGTTT
TTCGTCCCGTCGGCCTTCGAATACCTTCACGAAGGGGGCTTgatccgtcc
ttcccctttctatCGGGGCTACTTCGACACCCCCGACTTGGCGCAAACGA
CCTTGCGGCAACTCGGCGAAGCGCACGGACATCAATTTGCCTCCCTGCCG
TACACCGCGCCTCGGGGTTTGGAAAGCTTGGAGTTGTCGGGCGAGTACAC
CTGCTGGGACCTGATGGCTTTGGGGTTGAGTCAGCGGAAATGGGCCACCA
CCTGCCTGCTCGAGTTGAAACGGGCCTTGGAGAACCAGGACGCGTACCCG
GTGCTCTtcgcggtggacgaggtctCGGAATGGTTCTACCCTTCCTCGTA
TTTCTACGCGCGGAAAAAAATCGAGGCTTCCCGCTTGGCAGTGGTGGCCt
ccctccgaggcctcctccccttccctccctccggcccagGGTACGGGAAA
CATCACCAACGttttgctttcttggcgGCATATTCCCATCGGTACCCGCG
GCGTTCCTACAAAAAAGCCAGCAAGGGAGCCGAAGGACGAAAACGACGCG
GAGACCTTCCCCcttatcccctcccccgcttcctcgcaCCCTACGACGTG
CCCCTACCCCCTACCTATTCCCCCACTGAATTCCAAGTTTTGTACAACTT
TGTCGCCGATCAGGGGCTCTGGGGACCTCAACCGTCCTTCACCAGCGCCG
CCCTGCGACAGGCTCGGATGATCTCGGCGGGACATCCGGGTACCTTTGCG
AAGGACGCGGTGGTTTTGGAACGTCGACTGTTTGCTCCGCAAAACCGGGT
GGGGAAAGCCTCGGCATGCGCACCCGCCAATTTCATGCTGGCGGATCtgt
tggaggacgaggaagcgggggagggaggggcggagggaggggaggagcac
cgAGCTTCCGATGCGCAGCATGTGGCCCAGCAgatgtgaATGTTCATGTT
GCTATCTGCACAGGTACTGGGGGTGAGTTGGTGTGTTTTGGTCATGAAAC
GTTTGCTTTGCTgcaggagcggggggagccGTGGAAGCACCGTGGCCTGT
CAGGTTTCCGCTTTAAAGCCAATTCCTGCGCGACAGCCCCTACCGCCGTC
GATCTCTGCTGCGGCCTTTgcgcgctcctccttcttcctctcttctctcc
catcccGCACTTTCACGACGAAATCTACCGATGAAGATCAGGTCAAGCCT
CCTCGGGCGACCGGTGGCAAGTACAAAGCAAGAGCCATGGGCAAACGATC
GGCTGCCCTGACAGATTCAGGGATAGATGATGCCCTGGAGAAAGAATTAC
TCTATCTTGACACGTCGTCCCTGGTCCTACCCCCCGGAACGCAGACGGAA
GGGATGactgtggaggagatgcagaCGTTGGCGGACGCCTACGCCCTTCA
AATGCAAGAAAAAGCGAaccgggagggggacgtggaggagggccattACC
CGGAAGTTACGTCGGAGCGGTTGGACCCTACCATGGTCTATGCCCCCTCT
GACGACCCTCGGCAccacgtggaggagggagcgatggggAAAATTTACAC
gctgagcgaggaggaagtcaaGCGGTATTTCccggggccttggaggcggc
cTAGCCGCGTCCCCTGGCTCACGGACTTACAAGCCGTGCTGACCCGACGC
TACCTGTTAGTACGGccgcaggcggtggaggtgatgCAAGGATTGGGAAG
CTTcgcaggaaaagggcgggagcagggTCGGTTCGGGGGCATGGAAAGGG
TGGAGGCCTTGCGGAACgactgggaggagaaaggcgggTTTGACGGGGCC
TTTGCGCGGGctaagaggggggaagggggggaggtcaggCCGTCAGTGGC
ACCGACGCCCCCTCTCGGGAAAGTtgcggacgaagaggaacgtggagaag
gggaagaaggcgcggtggatggggaaagggtggacgacgacgacgacgac
gaatACGATTTGttcggtggggaggaggatgacgaggagaggcTACGGgc
ggggttggggggggccGACGGGGGAGGCTCTGCCTACGAGGCACGAAAGA
CGGACTGGGACCAGTACGGGACTCTGAAGCAATTGGCCGTGGACGATTCG
TCCCTGGTCCATCCGGAGCAACGTTTGGAACTGCCCGTGCCGGCGGTGCc
gaccgagggcgggagggagggcgggagggagggcggggtccgGTCCATCT
TTCTCCTGTCGGGCCCCAGGGGCTCGGGGAAGACCGCGACCTTGTACCAT
GCCGTCCATTACGCACGGCGGTCTGGTTGGGTGGTGTTTTTCGTCCCGTC
GGCCTTCGAATACCTTCACGAAGGGGGCTTgatccgtccttcccctttct
atCGGGGCTACTTCGACACCCCCGACTTGGCGCAAACGACCTTGCGGCAA
CTCGGCGAAGCGCACGGACATCAATTTGCCTCCCTGCCGTACACCGCGCC
TCGGGGTTTGGAAAGCTTGGAGTTGTCGGGCGAGTACACCTGCTGGGACC
TGATGGCTTTGGGGTTGAGTCAGCGGAAATGGGCCACCACCTGCCTGCTC
GAGTTGAAACGGGCCTTGGAGAACCAGGACGCGTACCCGGTGCTCTtcgc
ggtggacgaggtctCGGAATGGTTCTACCCTTCCTCGTATTTCTACGCGC
GGAAAAAAATCGAGGCTTCCCGCTTGGCAGTGGTGGCCtccctccgaggc
ctcctccccttccctccctccggcccagGGTACGGGAAACATCACCAACG
ttttgctttcttggcgGCATATTCCCATCGGTACCCGCGGCGTTCCTACA
AAAAAGCCAGCAAGGGAGCCGAAGGACGAAAACGACGCGGAGACCTTCCC
CcttatcccctcccccgcttcctcgcaCCCTACGACGTGCCCCTACCCCC
TACCTATTCCCCCACTGAATTCCAAGTTTTGTACAACTTTGTCGCCGATC
AGGGGCTCTGGGGACCTCAACCGTCCTTCACCAGCGCCGCCCTGCGACAG
GCTCGGATGATCTCGGCGGGACATCCGGGTACCTTTGCGAAGGACGCGGT
GGTTTTGGAACGTCGACTGTTTGCTCCGCAAAACCGGGTGGGGAAAGCCT
CGGCATGCGCACCCGCCAATTTCATGCTGGCGGATCtgttggaggacgag
gaagcgggggagggaggggcggagggaggggaggagcaccgAGCTTCCGA
TGCGCAGCATGTGGCCCAGCAgatgtga back to top
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