rna3714, rna3714 (mRNA) Nannochloropsis gaditana

Overview
Namerna3714
Unique Namerna3714
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length829
Alignment locationCM002461.1:1036090..1037517 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100392g4.5846.mrna
Orig protein idgnl|cribi|Naga_100392g4.5846
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1036090..1037517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100392g4gene3578Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3714rna3714-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26965.1cds3705Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3714 ID=rna3714|Name=rna3714|organism=Nannochloropsis gaditana|type=mRNA|length=829bp
ACAGGGTCGTGCTTTTTGCGTTGGCGGTCTTTTCGGCACTACGATCAAGG
TTTGCGTGGTACATCATTAGCCCTCAGCGGGGTCCTATACCATGTTGAGC
GCGCAACTTCGAGCTGAAATCAACAAAACAGACATGGACGTGCCCAAAAT
CAAACAATTTTGTCGTAATCATCCTGTGGGTACCATCGTCGACAACAAAA
TGCGCGTCAAAGTGTGGTTAGCGCTTCTCCTGGACGGGGAGCCCCCGCCG
CCGCTACCCTCCCTCCCCCCCACGGCCCTATTGGTGGAAGAAGACGCACG
CGTTGTGGACGCCGACGTGAAGCGTACGCGCGGCTACCTGCCCATCTTCC
AACTCCCGGACACCCAAGACACGGTGCGCAAGCTCCTTAAAACCTACTGT
CTGGCTACCGGCGTCAAATACAAACAGGGCATGCACGAGCTGTTGGCCCC
GTTTGTAGCCCTAAGCCCGGACCCTCCGTCCCCCCCACTGCCAGTCGAGG
CCATCTACGCCATGTTTTTCCGCTTCTTATCCCGGTACCTCCGGCCCTTT
TTCTGGGACGCAGGGACCCGAGCCTTGCAAGCGGGCTTTGCCCGTTTTGA
ACTCCTGCTTTTGTACCACGACCCCGAACTCGGCACGCATTTAAGGCGAC
ACGACTTCCCCCCCGCCCTGTATCTGACGCCTATGCTTGTGACGCTCTTC
GCACACAACCTGGAAATGTACCTGGTCCATCGGCTGTGGGACAGCTACCT
GAGCGTGGACGACCCTGCCTTTGTCTACTTTGTCGCCCTCGCCCTCTTCG
CCAGCAAGCGCTACCTCCTTCTTCCCTCC
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protein sequence of rna3714

>rna3714-protein ID=rna3714-protein|Name=rna3714|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
SSSSLPPSLPLVVLDARPAEEYAQSGAGRVRHSFRPPPPLWKSPPLLSDW
LKRQGLRPGRQRLCVVGSWQRKEGRGEKEESEQLWRRLLLGSGEEEEEGE
GEEEEGERHPPSPRLGSGVDTGLVLVKSLQALGFPYVSKLRGSFDHFVDF
LLLSPGFGTSSFSPSVATEDPPGILVERHDPSVYELWRRRAWAAAALPPS
LYTAAGFRTPSLLPASNASPLSDNQWCWPPDMAGLPLPRGRRLTPKDMLR
LAETLEAAESKGHSAVVRAVKEMVAVQKKMIEVGVGDEGEEDDEGREGKE
QGKDVEKGGSPHRGGQSRMQHFFSRKPKSSSEGPKSMEGNEQREGREGGE
GGMTASMVVGKAALLLDKADR
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mRNA from alignment at CM002461.1:1036090..1037517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3714 ID=rna3714|Name=rna3714|organism=Nannochloropsis gaditana|type=mRNA|length=1428bp|location=Sequence derived from alignment at CM002461.1:1036090..1037517+ (Nannochloropsis gaditana)
tcctcctcctccctccctccctccctccctctcgtcgtcTTGGACGCCCG
TCCCGCCGAGGAATACGCCCAGAGCGGAGCCGGTCGCGTGCGGCACTctt
ttcgccctcctccccctctgtggaagtctcctcccctcctctcggaCTGG
CTGAAGCGTCAAGGCCTGAGGCCCGGGCGGCAACGGCTCTGTGTGGTGGG
GTCCtggcaaaggaaggaggggaggggggagaaggaggaatccGAGCAGT
TGTGGCGACGCCTGTTGTTGGGctcgggcgaggaggaggaagagggggag
ggggaggaagaggaaggggaacggcatcccccctccccaaggTTAGGGTC
AGGGGTGGATACAGGCCTCGTTCTCGTCAAGTCCCTGCAGGCGCTGGGCT
TCCCCTACGTGAGCAAGCTCCGAGGCAGCTTCGACCACTTcgtcgacttc
ctcctcctctctccgggCTTtggcacgtcctccttctcgccttccGTTGC
CACCGAGGACCCTCCGGGTATCTTGGTGGAGCGCCACGATCCTTCCGTTT
ACGAgctgtggcggcggcgagcATGGGCAGcggcggccctccctccctct
ttgtacACCGCCGCTGGCTTTCgaactccctccctgctccctgcctccaa
cgCCTCGCCCCTGTCCGACAACCAATGGTGCTGGCCCCCGGACATGGCGG
GCTTGCCCTTgccaaggggaaggagattaACCCCTAAAGACATGTTGCGG
TTGGCCGAGACATtagaggcggcggagagcAAGGGGCACAGCGCCGTGGT
TCGGGCCGtgaaggagatggtggcggTGCAGAAGAAAATGATcgaggtgg
gcgtgggggacgaaggggaggaggacgacgaagggcgggaggggaaggag
cagggtaAAGACGTGGAAAAAGGGGGCTCCCCCCACAGAGGCGGCCAGTC
ACGCATGCAACATTTTTTCTCGCGCAAGCCcaagagcagcagcgaggGCC
CCAAGAGCATGGAAGGTAACGAGCAGAGGGAAggtcgtgaaggaggagag
ggagggatgacagCTTCGATGGTGGTGGGAAAGGCGGCGCTTTTGTTGGA
CAAAGCGGACAGGTAGTTAGGTCATGTGGTAGAGAGACATGCCGGTGATA
ACAGCGAGACACTCCTGTGATAATGGCTAGAAGCTTTGGGCTTGTTTGTC
GATATTGTGATTTTGGAAGCCTTCGACACCGGTAGTGAGCACGACGGGAG
GTTTGTCGTGGATAGGAGAGGGCATCAGGACATGTGTACACAGGAAAGGT
GTTAAAATCCATGTATGCATAGAAAGCGCGACTGGGGAAAAATAAACGAA
GTAACCAAGCATTGACTAGTCAAGTAAAACGAGACATAAACTGTAAATGT
CGTGATAATGCAAGATAAAGAAACGACC
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Coding sequence (CDS) from alignment at CM002461.1:1036090..1037517+

>rna3714 ID=rna3714|Name=rna3714|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002461.1:1036090..1037517+ (Nannochloropsis gaditana)
tcctcctcctccctccctccctccctccctctcgtcgtcTTGGACGCCCG
TCCCGCCGAGGAATACGCCCAGAGCGGAGCCGGTCGCGTGCGGCACTctt
ttcgccctcctccccctctgtggaagtctcctcccctcctctcggaCTGG
CTGAAGCGTCAAGGCCTGAGGCCCGGGCGGCAACGGCTCTGTGTGGTGGG
GTCCtggcaaaggaaggaggggaggggggagaaggaggaatccGAGCAGT
TGTGGCGACGCCTGTTGTTGGGctcgggcgaggaggaggaagagggggag
ggggaggaagaggaaggggaacggcatcccccctccccaaggTTAGGGTC
AGGGGTGGATACAGGCCTCGTTCTCGTCAAGTCCCTGCAGGCGCTGGGCT
TCCCCTACGTGAGCAAGCTCCGAGGCAGCTTCGACCACTTcgtcgacttc
ctcctcctctctccgggCTTtggcacgtcctccttctcgccttccGTTGC
CACCGAGGACCCTCCGGGTATCTTGGTGGAGCGCCACGATCCTTCCGTTT
ACGAgctgtggcggcggcgagcATGGGCAGcggcggccctccctccctct
ttgtacACCGCCGCTGGCTTTCgaactccctccctgctccctgcctccaa
cgCCTCGCCCCTGTCCGACAACCAATGGTGCTGGCCCCCGGACATGGCGG
GCTTGCCCTTgccaaggggaaggagattaACCCCTAAAGACATGTTGCGG
TTGGCCGAGACATtagaggcggcggagagcAAGGGGCACAGCGCCGTGGT
TCGGGCCGtgaaggagatggtggcggTGCAGAAGAAAATGATcgaggtgg
gcgtgggggacgaaggggaggaggacgacgaagggcgggaggggaaggag
cagggtaAAGACGTGGAAAAAGGGGGCTCCCCCCACAGAGGCGGCCAGTC
ACGCATGCAACATTTTTTCTCGCGCAAGCCcaagagcagcagcgaggGCC
CCAAGAGCATGGAAGGTAACGAGCAGAGGGAAggtcgtgaaggaggagag
ggagggatgacagCTTCGATGGTGGTGGGAAAGGCGGCGCTTTTGTTGGA
CAAAGCGGACAGGTAG
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Synonyms
Publications