rna3712, rna3712 (mRNA) Nannochloropsis gaditana

Overview
Namerna3712
Unique Namerna3712
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length880
Alignment locationCM002461.1:1032731..1034116 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101386g2.2449.mrna
Orig protein idgnl|cribi|Naga_101386g2.2449
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1032731..1034116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101386g2gene3576Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3712rna3712-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26969.1cds3703Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3712 ID=rna3712|Name=rna3712|organism=Nannochloropsis gaditana|type=mRNA|length=880bp
ATGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAAGGAGAAGAGGAAGAGGAGAAAGCAA
GGCAGCTGGGGTCTTCGCAGGCGCGTCGAGGGCTATCAGCAGCCGCTGGA
TGGCGGGGGAGGGAGGTAGTGGAGGGGGAAGGAGGGAGGGAAGGGGGGAA
AGAGGGGCGGGTGTGCCTATCGCCGAAAGCCTTGGTCTTCGTGCGGAGCC
CGCTGGCCGTCTTGGTGATGAGTATGGAGGGCGAGAGGGCGGGCGAAAAG
GAAGGTTGGGTGCACCTGACCTTGCACCGCGGCTTCCCGTTGAGCGCGTC
TTCGGCAGCGCCCGAGGCAAGCGCGAGGATCCTGATTGATGTGCCTGGAA
GGATAGAGGAGGCTGTGAAGATGCTGGTCTCTTTACCTCCAGCGGGCGGC
AGTGCGTCTCCCTGCAGCGTGCAGGCGTTGCTCGAGGCAGTGATGGGGAA
GGAAGGGAGGGTGGAGAAGCTGGGAGGGGAACGGCCGGGGAGAGAGGGCG
GGAGAGGCGGCGGGAGAGAGGAGGTGGAGGTGCTGGTAAAAAAGCTGGTT
GGCATTTTGACGTACCACGGCTATCTTCGCCCCTGGCGACACGACCCGGA
GGAAGGTGGATGAGCCGCGAGCGTTGATGGGGAGGGAGGATGGGAGGTAC
GGGGGAGAGGTGGGGAGATTGGGTGAAGGGTCCAGAGGGTGGGTGCTGAT
GGCGATGGAAGAGGGGTATGGAGGAGTGATGGGGAGGGAGTGTCTTCCAA
GCACGCGGACGCCCAGTGAGGAGGTTCAGTGATTTCTCTGGAAGAAAAGG
ATTGTGACCCTGCCTGGCGCGGTACAGAGG
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protein sequence of rna3712

>rna3712-protein ID=rna3712-protein|Name=rna3712|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MAAQEDAGTLRQRLQEKIHELANEKLPTLNADRGGTLHVTVRDVRNVLTP
PTVAVTPEEAEDDAASRPGEDGEALLNGHTSLHAHNYSHKNLRFLVEVSP
STAVMTEEGEAQVEVEDLGGIATFPLMSLEAKVVVHFGARLEHFVQVPLH
NRYRESELGQLSDWHASAAVEGKETETETPGVEDLTNVPAVRLVFKFERR
NRGEVQRVMEELQKLQEEVGRLGKGEGEGRAGVGKKGGVRTGRKGGIQSV
DEDEDEEGREDASGSRVLSLWRWAVVPMIFIIRVGGQVGGLVWRRRAIFM
FIGGTLFFHLRGDDLAV
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mRNA from alignment at CM002461.1:1032731..1034116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3712 ID=rna3712|Name=rna3712|organism=Nannochloropsis gaditana|type=mRNA|length=1386bp|location=Sequence derived from alignment at CM002461.1:1032731..1034116- (Nannochloropsis gaditana)
TTGCTCTGGTGTCTCGAAGATACACTTGGCATCGCCGCTCATCCCTATCG
TGAACCCAACCACCCTCCCCACTGCATACAGGTAACACAGGGCTAGGTAT
CCACGCAGGGAAATGGCAGCGCAAGAGGACGCTGGAACATTGCGGCAGCG
GTTGCAGGTATTGGAGAGGGGGAGGACATCAGGTAGAAGACGAGCCATTG
TTGGGACAGAGATGTGAAAGAAAGAGAGCGAGCATGCGTCTTCTCCTCCC
TGCGGATGTGACAGGCAATGGTCTGACGGGAGCAAGCACAGGAAGTCGAA
TGGGAGGCCGTGATCACGAAATGAGATCCTTTGCGCGTGAAATCGCAGGG
CATGCGAGTCGTACAGCCAGGCGCGACGGGCTTATGTATCAGTGCTGTGT
CCGCCCCGTCACACCGACACGTACCTCCCGTCGTTCCCTTCCCCTCCTCT
ACCTCCCATACGACCCTCTCTGCGCAGGAAAAGATCCACGAACTTGCCAA
CGAAAAACTGCCCACGCTGAACGCAGATCGTGGGGGTACGCTACATGTGA
CAGTACGGGATGTTCGTAACGTCCTGACTCCCCCCACGGTGGCCGTCACG
CCTGAGGAGGCGGAGGACGATGCGGCCTCGAGGCCCGGGGAGGATGGGGA
GGCGCTCTTGAACGGGCACACGAGTCTCCATGCCCACAATTATTCGCACA
AGAATTTGCGGTTTTTGGTAGAAGTCTCGCCGAGCACGGCGGTGATGACG
GAGGAAGGCGAGGCCCAGGTCGAGGTGGAGGACTTGGGCGGGATCGCGAC
CTTTCCCCTGATGTCTTTGGAGGCGAAGGTGGTGGTCCATTTCGGCGCCC
GTTTGGAGCATTTTGTCCAGGTGCCGTTACACAACCGTTACCGGGAGTCG
GAGTTGGGACAGCTGTCGGACTGGCACGCGTCGGCGGCCGTGGAAGGGAA
GGAGACAGAGACAGAGACGCCAGGGGTGGAAGATTTGACGAATGTGCCGG
CGGTGCGCTTAGTATTCAAATTTGAACGGAGGAACCGGGGAGAAGTCCAG
CGGGTGATGGAGGAGTTGCAAAAATTGCAGGAGGAGGTGGGGAGGTTGGG
GAAAGGGGAAGGAGAGGGGAGGGCGGGCGTGGGCAAGAAAGGCGGTGTCC
GCACGGGGAGGAAGGGGGGGATTCAAAGCGTGGACGAGGACGAGGACGAG
GAAGGGCGGGAAGATGCAAGTGGGAGCAGGGTGCTGTCGCTCTGGCGCTG
GGCGGTGGTACCGATGATTTTCATCATCCGGGTAGGGGGACAGGTGGGGG
GATTGGTGTGGCGACGGCGGGCTATCTTCATGTTCATCGGCGGCACGCTT
TTCTTCCATCTTCGGGGGGATGACTTGGCCGTGTAG
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Coding sequence (CDS) from alignment at CM002461.1:1032731..1034116-

>rna3712 ID=rna3712|Name=rna3712|organism=Nannochloropsis gaditana|type=CDS|length=1908bp|location=Sequence derived from alignment at CM002461.1:1032731..1034116- (Nannochloropsis gaditana)
GAAAAGATCCACGAACTTGCCAACGAAAAACTGCCCACGCTGAACGCAGA
TCGTGGGGGTACGCTACATGTGACAGTACGGGATGTTCGTAACGTCCTGA
CTCCCCCCACGGTGGCCGTCACGCCTGAGGAGGCGGAGGACGATGCGGCC
TCGAGGCCCGGGGAGGATGGGGAGGCGCTCTTGAACGGGCACACGAGTCT
CCATGCCCACAATTATTCGCACAAGAATTTGCGGTTTTTGGTAGAAGTCT
CGCCGAGCACGGCGGTGATGACGGAGGAAGGCGAGGCCCAGGTCGAGGTG
GAGGACTTGGGCGGGATCGCGACCTTTCCCCTGATGTCTTTGGAGGCGAA
GGTGGTGGTCCATTTCGGCGCCCGTTTGGAGCATTTTGTCCAGGTGCCGT
TACACAACCGTTACCGGGAGTCGGAGTTGGGACAGCTGTCGGACTGGCAC
GCGTCGGCGGCCGTGGAAGGGAAGGAGACAGAGACAGAGACGCCAGGGGT
GGAAGATTTGACGAATGTGCCGGCGGTGCGCTTAGTATTCAAATTTGAAC
GGAGGAACCGGGGAGAAGTCCAGCGGGTGATGGAGGAGTTGCAAAAATTG
CAGGAGGAGGTGGGGAGGTTGGGGAAAGGGGAAGGAGAGGGGAGGGCGGG
CGTGGGCAAGAAAGGCGGTGTCCGCACGGGGAGGAAGGGGGGGATTCAAA
GCGTGGACGAGGACGAGGACGAGGAAGGGCGGGAAGATGCAAGTGGGAGC
AGGGTGCTGTCGCTCTGGCGCTGGGCGGTGGTACCGATGATTTTCATCAT
CCGGGTAGGGGGACAGGTGGGGGGATTGGTGTGGCGACGGCGGGCTATCT
TCATGTTCATCGGCGGCACGCTTTTCTTCCATCTTCGGGGGGATGACTTG
GCCGTGTAGATGGCAGCGCAAGAGGACGCTGGAACATTGCGGCAGCGGTT
GCAGGAAAAGATCCACGAACTTGCCAACGAAAAACTGCCCACGCTGAACG
CAGATCGTGGGGGTACGCTACATGTGACAGTACGGGATGTTCGTAACGTC
CTGACTCCCCCCACGGTGGCCGTCACGCCTGAGGAGGCGGAGGACGATGC
GGCCTCGAGGCCCGGGGAGGATGGGGAGGCGCTCTTGAACGGGCACACGA
GTCTCCATGCCCACAATTATTCGCACAAGAATTTGCGGTTTTTGGTAGAA
GTCTCGCCGAGCACGGCGGTGATGACGGAGGAAGGCGAGGCCCAGGTCGA
GGTGGAGGACTTGGGCGGGATCGCGACCTTTCCCCTGATGTCTTTGGAGG
CGAAGGTGGTGGTCCATTTCGGCGCCCGTTTGGAGCATTTTGTCCAGGTG
CCGTTACACAACCGTTACCGGGAGTCGGAGTTGGGACAGCTGTCGGACTG
GCACGCGTCGGCGGCCGTGGAAGGGAAGGAGACAGAGACAGAGACGCCAG
GGGTGGAAGATTTGACGAATGTGCCGGCGGTGCGCTTAGTATTCAAATTT
GAACGGAGGAACCGGGGAGAAGTCCAGCGGGTGATGGAGGAGTTGCAAAA
ATTGCAGGAGGAGGTGGGGAGGTTGGGGAAAGGGGAAGGAGAGGGGAGGG
CGGGCGTGGGCAAGAAAGGCGGTGTCCGCACGGGGAGGAAGGGGGGGATT
CAAAGCGTGGACGAGGACGAGGACGAGGAAGGGCGGGAAGATGCAAGTGG
GAGCAGGGTGCTGTCGCTCTGGCGCTGGGCGGTGGTACCGATGATTTTCA
TCATCCGGGTAGGGGGACAGGTGGGGGGATTGGTGTGGCGACGGCGGGCT
ATCTTCATGTTCATCGGCGGCACGCTTTTCTTCCATCTTCGGGGGGATGA
CTTGGCCGTGTAGATGGCAGCGCAAGAGGACGCTGGAACATTGCGGCAGC
GGTTGCAG
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Synonyms
Publications