rna371, rna371 (mRNA) Nannochloropsis gaditana

Overview
Namerna371
Unique Namerna371
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2442
Alignment locationCM002455.1:903561..905036 +

Link to JBrowse

Properties
Property NameValue
Productglutamine synthetase
Orig transcript idgnl|cribi|Naga_100003g119.1760.mrna
Orig protein idgnl|cribi|Naga_100003g119.1760
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:903561..905036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g119gene358Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna371rna371-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30243.1cds371Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna371 ID=rna371|Name=rna371|organism=Nannochloropsis gaditana|type=mRNA|length=2442bp
AACTTCCCGTCAATTGTGGCGAGGGCAAATTCTAATTCGAATCCTACTCG
GAAGGATATACCGTGTCGGGCCTGAGCTTTCTCCAAAATACGAGCGAGAC
AGCTGCGTGGGCAGAGAGACCATGGAGCATGGGAGATGGGATCGAGCATG
CGAACAGCCCCCATAAAATGCTTAGGTCGCCACGGGAGGCACATCAGGTT
GCTCATAGGATCCTCCAATTGTAAACATATGTCTCCTACAAAGGGAACAC
CACTATCAGGGCTTGGAGTATCTTCGTGTGCTGGAAGCGAAATACACGCA
CGGCTCAAAGACACAGACGGCATGGGCTTTGGGAGCCATTTTAAATAGCC
GTTCTCATCTATGTCAGCATATTGGTCGACCCTTTTTTTGTCGTACATTG
TATGTACGGGTACGACGCGGAGGCACCGCAGCCCTGCAAGAGAGCACCAA
AGAAAATTTATATGCTTTGTCTCTTGCGGCATATCCTTGTGACCTGCTCC
TGCAGAATAGCGGTACATTTTGCGATGAAGATGCACCGGAAAGGATGTCA
CATGACGTGCTGTAAGCGTAAATACAGAAGATGGGGAGCTCTATGCCTGA
TTTCCGAATTGCAGTGCGCACAGCGGGCTCCGGTCGAAGTGCTTGGGACT
TCGACGAGCAAGTCGAAGAATGGAAAATGGGGCGACAGCTGACGCCCCGA
CCGTGAGCTGCCATACTTCGTGTGTTGGAAAAGGGGAGCTTATGCAGCAT
TTCGAACGCTACATCCCGCATCATCTCTCCACAGGTGACTCAAGCGATTA
AGTAAATCACGGCTGGGCCAAGCTTTTGGAAGTTTCTCTCTTATCGATTG
TGTGTTTGCGACGAAACAAACTGAACGCGGCAACACGGCCCCGTCAGGGA
AAGAGGCAGGTAGCAAGGAGGCGATTCTCCATTGCGGCCAAGGGGCCAGA
TTAGAGAAATCGGAAACCTAAGGACTGCTACGTGGAAAAATGTTATCGAT
GTTCGCATCAACATGCTCTTCGCCTGTAGCACATCCTACCCATAGGTCAT
CTGTCCACCTTCTTCTCAAGCTCGAGCATCTTTTCGTTCAGATAGAGGAG
CACATGAATCCATCCCTTATTGGCCGTGCCTTTGTCATTGTAGACACTTT
GGAAGCAAAAGAACAGCAAGAATCTGAGGATGACTCACTGACACCTTTGG
ATTATAGTGCCGAAGCCTTCAACTCAGGAATTCGGCAGAATATGACCCTA
GGATTCATAATGCGACATTTTCCTGATGTTGCACTTGTCCTTGCTGCTTC
ATGGAGATCGCGGTCTACTTCTATGCTGCAAGAATATCAAAACGTTGCCA
ATAAAGGTCCCGTTCAGCTGCTGCGTCGCGTCGTGGAGGGTGACGGGTTG
ACGCTCGTTGAGGACTTTGGAGATGGGCAGTTCGGCGAGTACAGCGTCGC
GCTGCCGACTTCCGAACATGATTGCACGAGACCATCGTACCTGGGGGAAA
TAGAGCAAGCGAAAGAGTTGGGCGGATTTCTTCGAGCGGAGTTAAAACGC
TTGCTTGGCTACCGTCTTACTTTTGGTGTTGGTAGAACTTTAGAAGAAGC
TCGCCGGACAGCAAAGGGACTACTTGTTTTTCGCGGAGATGGGTCAATGC
CTAGCCCACCTCTGCGACGGCATCATGAAAACTCATTTTCGGGTCAAGAC
CATGATGCGAGACCCACCTCACACGGCTTCTTTTTTGAAGATGGGGATGA
ATCTGGAACTTTCTCACAAAACTACGAAAGCTCCAATCGACAAGAAATAC
GCGTGGACGAAGAAGAGATCGTGCTCGGCGCGTCAATGAATCGTGCATGG
AGTATGCGCTCTTCGAAATGCCGCACATCGCCGTCCGATGTCGAAAACGC
GCAGCAGGCTTCCCACTCTGGACAGGCTCAAAAGGTATCCACGAACAGAG
TTGCACCATTTTGTTCTCAGGATACAAAACTGCGAGTTACAGATGATAAA
ATGAAAACACAGCAATGCGTGGAAGCTTTTAAGTGTCGGCAATCCACAGC
GATTTCAGGACATCGATTAAGGTTACATGGACATGGAACGGTCGTCATGA
GCTGGATTTTAGACACATTCACCGATGCTTCTGAGTTGGCTTCCTTTCTC
TGCAGTGTGGAAGCTCCTTCAATTCAATTCACAAGTTAAAACTAGGCTGC
ACTGAAAGGAAAGCTTATGTATTCACAAATCACGGAAGTCGTGACCCACT
CAATTTGTCTCAATGTAAAATTGCTGCGCGGACACTCGTTTCATTTTGTA
CAGCAACTTGATTTTGTCAAGCTGGCATCAAAAACAATTGCCTTTCTATA
AATAGAGCTTGCAACATCATACTTTTTGACGTTGAATGGAGTCTTTATTT
TTGAAATCTTCTTCCTAAAACTACTTTCTAAACATTACTCAC
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protein sequence of rna371

>rna371-protein ID=rna371-protein|Name=rna371|organism=Nannochloropsis gaditana|type=polypeptide|length=491bp
MPQETKHINFLWCSLAGLRCLRVVPVHTMYDKKRVDQYADIDENGYLKWL
PKPMPSVSLSRACISLPAHEDTPSPDSGVPFVGDICLQLEDPMSNLMCLP
WRPKHFMGAVRMLDPISHAPWSLCPRSCLARILEKAQARHGISFRVGFEL
EFALATIDGKFDDRHTYSSARGFDVESSLLDDLCDTLYSMGIVVEQLHKE
SAPGQFELVLGHLPAMEAVDGLLLAREAVAAVAYRHQRRVTLLPKFLPEY
AGNGCHVHLSLWKNGINILSLSGATIRPGSLDGVLDMYTTLSGFSSLNET
FRQFLGGLVALLPALMCFTTPTPNSFRRLQPGAWAGAFQGWGIANKEVPL
RLPVQTLEDGLFTNVEVKLCDSTANPHIALAAILSAGLVGVDLAATLSEA
DFAESFAALPAPLDVDPGQLTYAERTRRKIKELPREWSTAKACLMSPEGK
GLRELLGEDMVRACVAIRESEWAALGGIRLEEEIDLLFDRY
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mRNA from alignment at CM002455.1:903561..905036+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna371 ID=rna371|Name=rna371|organism=Nannochloropsis gaditana|type=mRNA|length=1476bp|location=Sequence derived from alignment at CM002455.1:903561..905036+ (Nannochloropsis gaditana)
ATGCCGCAAGAGACAAAGCATATAAATTTTCTTTGGTGCTCTCTTGCAGG
GCTGCGGTGCCTCCGCGTCGTACCCGTACATACAATGTACGACAAAAAAA
GGGTCGACCAATATGCTGACATAGATGAGAACGGCTATTTAAAATGGCTC
CCAAAGCCCATGCCGTCTGTGTCTTTGAGCCGTGCGTGTATTTCGCTTCC
AGCACACGAAGATACTCCAAGCCCTGATAGTGGTGTTCCCTTTGTAGGAG
ACATATGTTTACAATTGGAGGATCCTATGAGCAACCTGATGTGCCTCCCG
TGGCGACCTAAGCATTTTATGGGGGCTGTTCGCATGCTCGATCCCATCTC
CCATGCTCCATGGTCTCTCTGCCCACGCAGCTGTCTCGCTCGTATTTTGG
AGAAAGCTCAGGCCCGACACGGTATATCCTTCCGAGTAGGATTCGAATTA
GAATTTGCCCTCGCCACAATTGACGGGAAGTTTGATGACAGGCATACCTA
TTCATCCGCTAGAGGTTTCGACGTGGAATCGTCCCTCCTGGACGATTTGT
GTGACACTCTGTATTCAATGGGAATAGTTGTGGAACAACTTCATAAGGAG
AGTGCCCCCGGACAGTTTGAGTTGGTGCTTGGTCATTTGCCTGCCATGGA
GGCCGTCGACGGACTGCTACTTGCACGTGAAGCCGTGGCGGCAGTCGCGT
ATCGTCACCAGCGACGTGTCACCCTCTTGCCCAAGTTTCTGCCAGAGTAC
GCTGGCAATGGCTGCCATGTTCATTTGAGTTTATGGAAAAATGGAATCAA
CATTCTTTCGCTTTCTGGAGCGACGATTCGTCCAGGATCCCTCGACGGTG
TGCTAGATATGTACACTACATTGAGTGGTTTTTCATCACTTAATGAAACT
TTCCGCCAATTTCTGGGCGGTCTTGTAGCTCTACTTCCTGCACTTATGTG
CTTCACAACCCCGACTCCGAATTCTTTCAGGCGACTGCAGCCCGGGGCTT
GGGCAGGGGCATTTCAGGGCTGGGGAATCGCTAATAAGGAGGTGCCGCTC
CGTTTGCCCGTACAAACACTTGAAGACGGGCTTTTTACTAATGTTGAGGT
CAAGTTATGTGATTCGACTGCAAATCCCCATATAGCTCTAGCAGCAATTC
TAAGTGCCGGCCTGGTCGGAGTAGATTTGGCTGCAACGTTATCCGAGGCA
GATTTCGCGGAGTCCTTCGCAGCTCTCCCCGCACCGCTGGATGTAGACCC
GGGACAGCTGACATATGCCGAGCGGACTCGCCGTAAGATAAAAGAGTTGC
CTCGGGAATGGTCAACGGCTAAAGCATGTCTAATGAGTccagagggaaaa
ggactcCGAGAGTTATTGGGAGAGGACATGGTCAGAGCTTGCGTAGCGAT
TCGCGAAAGCGAGTGGGCAGCTTTGGGGGGTATACGGCTTGAGGAAGAAA
TCGATCTACTCTTTGACCGATACTAG
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Coding sequence (CDS) from alignment at CM002455.1:903561..905036+

>rna371 ID=rna371|Name=rna371|organism=Nannochloropsis gaditana|type=CDS|length=1476bp|location=Sequence derived from alignment at CM002455.1:903561..905036+ (Nannochloropsis gaditana)
ATGCCGCAAGAGACAAAGCATATAAATTTTCTTTGGTGCTCTCTTGCAGG
GCTGCGGTGCCTCCGCGTCGTACCCGTACATACAATGTACGACAAAAAAA
GGGTCGACCAATATGCTGACATAGATGAGAACGGCTATTTAAAATGGCTC
CCAAAGCCCATGCCGTCTGTGTCTTTGAGCCGTGCGTGTATTTCGCTTCC
AGCACACGAAGATACTCCAAGCCCTGATAGTGGTGTTCCCTTTGTAGGAG
ACATATGTTTACAATTGGAGGATCCTATGAGCAACCTGATGTGCCTCCCG
TGGCGACCTAAGCATTTTATGGGGGCTGTTCGCATGCTCGATCCCATCTC
CCATGCTCCATGGTCTCTCTGCCCACGCAGCTGTCTCGCTCGTATTTTGG
AGAAAGCTCAGGCCCGACACGGTATATCCTTCCGAGTAGGATTCGAATTA
GAATTTGCCCTCGCCACAATTGACGGGAAGTTTGATGACAGGCATACCTA
TTCATCCGCTAGAGGTTTCGACGTGGAATCGTCCCTCCTGGACGATTTGT
GTGACACTCTGTATTCAATGGGAATAGTTGTGGAACAACTTCATAAGGAG
AGTGCCCCCGGACAGTTTGAGTTGGTGCTTGGTCATTTGCCTGCCATGGA
GGCCGTCGACGGACTGCTACTTGCACGTGAAGCCGTGGCGGCAGTCGCGT
ATCGTCACCAGCGACGTGTCACCCTCTTGCCCAAGTTTCTGCCAGAGTAC
GCTGGCAATGGCTGCCATGTTCATTTGAGTTTATGGAAAAATGGAATCAA
CATTCTTTCGCTTTCTGGAGCGACGATTCGTCCAGGATCCCTCGACGGTG
TGCTAGATATGTACACTACATTGAGTGGTTTTTCATCACTTAATGAAACT
TTCCGCCAATTTCTGGGCGGTCTTGTAGCTCTACTTCCTGCACTTATGTG
CTTCACAACCCCGACTCCGAATTCTTTCAGGCGACTGCAGCCCGGGGCTT
GGGCAGGGGCATTTCAGGGCTGGGGAATCGCTAATAAGGAGGTGCCGCTC
CGTTTGCCCGTACAAACACTTGAAGACGGGCTTTTTACTAATGTTGAGGT
CAAGTTATGTGATTCGACTGCAAATCCCCATATAGCTCTAGCAGCAATTC
TAAGTGCCGGCCTGGTCGGAGTAGATTTGGCTGCAACGTTATCCGAGGCA
GATTTCGCGGAGTCCTTCGCAGCTCTCCCCGCACCGCTGGATGTAGACCC
GGGACAGCTGACATATGCCGAGCGGACTCGCCGTAAGATAAAAGAGTTGC
CTCGGGAATGGTCAACGGCTAAAGCATGTCTAATGAGTccagagggaaaa
ggactcCGAGAGTTATTGGGAGAGGACATGGTCAGAGCTTGCGTAGCGAT
TCGCGAAAGCGAGTGGGCAGCTTTGGGGGGTATACGGCTTGAGGAAGAAA
TCGATCTACTCTTTGACCGATACTAG
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Synonyms
Publications