rna3705, rna3705 (mRNA) Nannochloropsis gaditana

Overview
Namerna3705
Unique Namerna3705
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length867
Alignment locationCM002461.1:1019406..1019983 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100127g19.6223.mrna
Orig protein idgnl|cribi|Naga_100127g19.6223
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1019406..1019983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100127g19gene3569Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3705rna3705-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26991.1cds3696Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3705 ID=rna3705|Name=rna3705|organism=Nannochloropsis gaditana|type=mRNA|length=867bp
CATGTCAAGCGTTTCCGCTTTCACACGCATAAAGCCGGGCATTTCATGCG
TCCTAGTGCAAATGCTACATCACGGTCTGCTGGCAAGGCCGGCAACTCGA
CCCATTTAGCACCCTTATAGGCCTTTACTTAGACTCTTTTGAGCAACGCA
ACAACAAAAAGGCAACCACATATCTCACCAATCTCTCCACCTGGCACACG
TTCGCATCAAATCATTGCTTCCTACATAGTGACCAGTTGGCTTGTGCAAG
GATTAGCCATCACGGTGCGCTGGCTGGTTAGCTGCGTCCATATCAAAGCG
GCTAGCAGCAAGCATCGGGGATCATTTCCTTTTTCCCGAAGGCCCTGCAT
TTCCAAACCAGAACCTAGAATATGTCAGCGCGGCTCGTACAATTTATAAA
CAGTCCCACGGGGCCCAAAACCACGCATTTCTGGGGGCCGGTGGCGAATT
GGGGCTTTGTGCTGGCGGCAATGATTGATTCGAGGAAGCCACCTGAGACA
ATCTCAGCCAAAATGACGGGAGTCCTCTCAGTCTACAGCCTGTTGTTCAT
GCGGTTTGCATGGATGGTCCAACCCCGCAATTACCTCCTTCTCGCTTGCC
ATGCCTCCAACGAGGTCGCGCAGCTTTATCAACTGAGCCGAAGAATCAGC
TATGATATGGAGCAGAAGGGAAAGAAATCGTAGAGAATAAAGAATTTGGA
AGACTGACGGGGAGCAGGTTCGCACGCTGCAAAAGACGGGCGTGACCATT
GGCGTTCGGCATCTCAAAAAGGAAGCTCTTGTGGACCGATATGCGGGCAC
ATGGAAAGGTGATGAAAGAAAACAACAACCGAAAAAAATATGCGTGCCGG
GAAGAAAATCGCAGTGG
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protein sequence of rna3705

>rna3705-protein ID=rna3705-protein|Name=rna3705|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MEKQPLREKRGRTGQSSRWTRRWICRETRMIKEGGACKHVHKESTSDKAI
SCILKPDRHFGPSPSLPPSLPPSPPGSKTATRRIPYRARACMAATPECLT
KQKPMDYPFTGRACMLIAVVVALLLLGSW
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mRNA from alignment at CM002461.1:1019406..1019983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3705 ID=rna3705|Name=rna3705|organism=Nannochloropsis gaditana|type=mRNA|length=578bp|location=Sequence derived from alignment at CM002461.1:1019406..1019983+ (Nannochloropsis gaditana)
atggagaagcAACCAttgcgggagaagagggggaggacgggacagAGTTc
gagatggacgaggagatggatttGTCGGGAAACGAGGATGAttaaggaag
gaggggcatggTCGGATTTATTGGCGGACCGCATGGGGAGCACTGCGacg
gcttccctccccgcttctccttggtCGTGGCGATGTACACGGTGGCGGTG
AAGCAAACATGTGCATAAAGAGTCGACTTCCGACAAAGCGATTTCTTGCG
tgactcctcccctcaggcctgctcccctccctctgtagCCACCGGAGCCA
ACGCCTGGGCTCTATATCACAAAATCCTCGGGCCGTGAATCCAGATCCTA
AAGCCCGATCGTCATTttggtccctccccctccctccctccctccctccc
tccctctccacctggGTCCAAAACTGCCACCCGCCGGATCCCGTATCGAG
CACGCGCGTGCATGGCAGCCACCCCGGAGTGCTTGACAAAACAAAAGCCC
ATGGACTACCCGTTCACAGGTAGGGCATGCATGTTGATCGCGGTTGTTGT
CGCTTTGTTGTTGTTGGGGAGCTGGTGA
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Coding sequence (CDS) from alignment at CM002461.1:1019406..1019983+

>rna3705 ID=rna3705|Name=rna3705|organism=Nannochloropsis gaditana|type=CDS|length=1170bp|location=Sequence derived from alignment at CM002461.1:1019406..1019983+ (Nannochloropsis gaditana)
atggagaagcAACCAttgcgggagaagagggggaggacgggacagAGTTc
gagatggacgaggagatggatttGTCGGGAAACGAGGATGAttaaggaag
gaggggcatgCAAACATGTGCATAAAGAGTCGACTTCCGACAAAGCGATT
TCTTGCATCCTAAAGCCCGATCGTCATTttggtccctccccctccctccc
tccctccctccctccctctccacctggGTCCAAAACTGCCACCCGCCGGA
TCCCGTATCGAGCACGCGCGTGCATGGCAGCCACCCCGGAGTGCTTGACA
AAACAAAAGCCCATGGACTACCCGTTCACAGGTAGGGCATGCATGTTGAT
CGCGGTTGTTGTCGCTTTGTTGTTGTTGGGGAGCTGGTGAatggagaagc
AACCAttgcgggagaagagggggaggacgggacagAGTTcgagatggacg
aggagatggatttGTCGGGAAACGAGGATGAttaaggaaggaggggcatg
CAAACATGTGCATAAAGAGTCGACTTCCGACAAAGCGATTTCTTGCATCC
TAAAGCCCGATCGTCATTttggtccctccccctccctccctccctccctc
cctccctctccacctggGTCCAAAACTGCCACCCGCCGGATCCCGTATCG
AGCACGCGCGTGCATGGCAGCCACCCCGGAGTGCTTGACAAAACAAAAGC
CCATGGACTACCCGTTCACAGGTAGGGCATGCATGTTGATCGCGGTTGTT
GTCGCTTTGTTGTTGTTGGGGAGCTGGTGAatggagaagcAACCAttgcg
ggagaagagggggaggacgggacagAGTTcgagatggacgaggagatgga
tttGTCGGGAAACGAGGATGAttaaggaaggaggggcatgCAAACATGTG
CATAAAGAGTCGACTTCCGACAAAGCGATTTCTTGCATCCTAAAGCCCGA
TCGTCATTttggtccctccccctccctccctccctccctccctccctctc
cacctggGTCCAAAACTGCCACCCGCCGGATCCCGTATCGAGCACGCGCG
TGCATGGCAGCCACCCCGGAGTGCTTGACAAAACAAAAGCCCATGGACTA
CCCGTTCACAGGTAGGGCATGCATGTTGATCGCGGTTGTTGTCGCTTTGT
TGTTGTTGGGGAGCTGGTGA
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Synonyms
Publications