rna3701, rna3701 (mRNA) Nannochloropsis gaditana

Overview
Namerna3701
Unique Namerna3701
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1713
Alignment locationCM002461.1:1010317..1011722 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100127g12.6212.mrna
Orig protein idgnl|cribi|Naga_100127g12.6212
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:1010317..1011722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100127g12gene3565Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3701rna3701-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26980.1cds3692Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3701 ID=rna3701|Name=rna3701|organism=Nannochloropsis gaditana|type=mRNA|length=1713bp
ATGGAGGCCATCTTCAGCTCCATCGGTCTACGACGCTTCCTGCATCGCCC
AGCAGGCAGGGCACCCAAATGGAGCAAAGAGACGGTCAACCAAGATGTCC
TGAATGCTTCCTACGCAGTACGCGGCCCCGTGCTGGACTTGGCCATGAAA
ATGGAGGAACGGCTCAGAAGCGGGGAAAGCTTGCCCTTTAAGGAAATGAT
TTATTGCAACATTGGTAACCCCCAGTCGTTGCAACAGAAGCCTTTGACGT
TTGTGCGACAAGTCCTGTCCCTCGTGACGAACCCGTTGCTTTTGGAGAAG
CACAGCGATCTCTTTCCCTCCGACGCCGTGGCCCGCGCCCAGAAATATCT
GGGGGCGCACCCCATGGGCGCCTACAGCAACAGTCAGGGCATCAAAACCG
TGCGGGAGGAGGTGGCGGCCTTTATCGGGAAGCGGGACCAGACTTTTTCC
CCGGACCCAGACGCGATTTTTTTGATCAACGGGGCGAGTGAAGGTGTCCG
GTATGGCCTTCAGTCCCTCCTTCGGCCCCGTCTCGCCGGCTACCACGACG
GCGTCCTCGTGCCCATTCCCCAATACCCTCTGTACTCCGCCTTGACCACG
CTCTTGAACGGCGAACTCGTCCCTTACTACCTGCGCGAGGAGGAAGGCTG
GACGTTGGAGGTGGGGGATCTGGAGGAGGCGTTGAAGCAGGCCCGGGCAA
GGGGTGTAACGGTCCGGGGTTTGGTGGTGATCAATCCCGGAAATCCGACG
GGGCAACTACTCTCCCGCGCGAACATGGAAAAAATTATCGAGTTCTGTGT
GCAGGAAAACTTGGTGCTGATGGCCGACGAGGTCTATCAGACCAACATCT
ACGTGGACGACCGGGGCTTCCTGTCGTTTCGCAAAGTGGCAGTGGACATG
GGCTACCCCCCCGACGCGGGGCCGGAGGAGCAGGGAATGAACAAGAAGCA
TTTACAGCTGGTGTCGTTCCATTCCGTGAGCAAAGGTTTCATGGGCGAAT
GTGGCTTGCGCGGTGGTTATATGGAGCTTTTTGGAATCCCCCCAGGCGTC
AAAGCCCAGTTGTACAAGCTCGCCTCCATCTCTCTGTGCAGCAATACGAT
TGGTCAAGTTGTGACGGGCTTGATGGTCCACCCTCCGGAAGAAGGCTCCC
CTTCCTTCCCTACCTACGAAGGAGAACGCACAGCCACCCTCGCTTCCCTG
CGCCGGCGCGCTCAGAAACTCACGGCGGGTTTGGGAAACTTGGAAGGCGT
GAGTGTTCAGCCTTCTACAGGGGCCATGTACTCCTTCCCACGCCTCAGCC
TACCCCCTGCCTTCCACGCAGAAGCTGTCAAACAAGGCGCAAAAGCCGAC
GAGTTGTACTGCATCCGTTTAGTGGAAGCGACCGGCATCGTCGTCGTTCC
GGGGTCTGGCTTCGGCCAAGTGGATGGATCCTGGCATTTCCGAACTACTT
TTTTGCCCCCTGAAGACAAAATGGACTCTGTGATGGAACGCTTAGGAAAA
TTCCACAAGGAACTCTTGGATGCATACCGCGGGACGAGAGATACCCACAA
AGCATTCGCACAAGAAATAATACTTGGTCTAGAACGCTTGAACGCATGGC
ACAGAAAGCTAAATCAGTACATGTGCTTGATGTGCAGTAGTTGCTATTAC
GTGATTACTGAGAGATGCCAGGTTACAAGTGCATACGTCACTATGGTCAG
CTTTAAGGCTTAG
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protein sequence of rna3701

>rna3701-protein ID=rna3701-protein|Name=rna3701|organism=Nannochloropsis gaditana|type=polypeptide|length=369bp
MKNEASQELASGAGNFRNGSRMSPPLSRSPMNRASPPSIHDHGRHTPPIP
EASLKNIDLGGGHVAPHQAIRRRDHLSPSFVLSKQYPIPEVQELTAVDGR
GQGASSAWRLALAQLKRFDIEWVISFLLIIFTCSATAIFTRDKGWFLLTA
PLVGFPLSNAFASFNIGLSTYVAEAYGGDERLTLYRHVGRISELSPRAGS
IAIYLYVCLVFSLLLSVILLWYIALFYQYLKSSEVLPSKESAVRLFGLGA
LTLGLLLSALGTGSFRAVIWNDMRHRRNSSESVNGADASPSFTDIDTGAL
ALRNGYAYGSTVITWLLWIIVGCVFISRSSWWAKGAGMAATQAQADIDIV
NDDMALEEENTDQGPPSHV
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mRNA from alignment at CM002461.1:1010317..1011722+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3701 ID=rna3701|Name=rna3701|organism=Nannochloropsis gaditana|type=mRNA|length=1406bp|location=Sequence derived from alignment at CM002461.1:1010317..1011722+ (Nannochloropsis gaditana)
CTAAACCTGCTAGCCATGTAGACTTTCTGGATTGCCATCATAATTCTTGA
TGTTGCCCTTTGTTTgagacccctcccttctcttgtcTGATATTTCTTCT
CAGGACCTGCTctccgtgctcctccccgaAGCAAATGAAGAACGAGGCTT
CACAAGAGCTAGCGTCGGGCGCAGGGAATTTCAGAAATGGCAGTCGAATG
TCACCTCCTTTGTCTCGCTCACCCATGAACCGTGCAtcgcccccctccat
tcATGATCATGGTCGACATACGCCTCCGATTCCCGAAGCATCTCTTAAGA
ACATCGACCTTGGAGGCGGGCATGTAGCTCCTCATCAAGCAATAAGAAGG
CGGGACCACTTGTCGCCATCTTTTGTGCTGTCGAAGCAGTATCCAATACC
GGAAGTGCAGGAATTGACGGCCGTCgacggaagaggacagggggcTTCGT
CAGCATGGAGGCTCGCTTTAGCGCAACTCAAGCGTTTCGACATTGAATGG
GTAATCAGTTTTCTCCTCATAATTTTTACATGCTCAGCTACAGCCATTTT
TACGCGCGACAAGGGTTGGTTTCTCCTCACCGCGCCATTGGTGGGTTTTC
CATTGTCCAATGCGTTCGCGTCGTTCAACATCGGCCTCTCCACCTATGTA
GCCGAGGCTTACGGCGGTGACGAGCGTTTGACATTGTATCGACACGTGGG
GAGAATATCAGAGCTTTCTCCGCGCGCAGGGAGCATCGCAATATACCTAT
ACGTGTGCCTGGTCTTTTCATTGCTTCTATCGGTGATCCTGCTTTGGTAT
ATCGCCTTGTTCTACCAGTATTTGAAAAGCAGCGAGGTATTGCCCTCAAA
AGAGTCAGCTGTGCGACTGTTTGGTCTAGGTGCACTGACACTTGGGCTCC
TGCTGTCAGCGCTTGGCACAGGATCTTTTCGGGCCGTCATATGGAACGAT
ATGCGGCACCGTCGCAACAGCAGCGAAAGTGTGAATGGCGCTGACGCCTC
CCCGAGTTTCACAGACATTGATACGGGGGCACTAGCTCTTCGTAATGGGT
ACGCTTACGGTTCTACCGTCATTACCTGGCTCCTGTGGATCATCGTCGGC
TGTGTTTTCATCTCTCGCTCAAGCTGGTGGGCTAAAggcgcgggcatggc
ggcGACACAGGCGCAAGCAGACATAGATATAGTCAATGATGACATGGCat
tagaggaggagaataCGGATCAAGGTCCGCCTTCCCATGTATAGTCTACT
TTCCATGATACCCAACAGAGCATTCACAAAAAGATCCATGAGTAAGCAGC
AGGAATAAGAGCGCGTATCGGCCAAGGCCCGTGTATATTTGCATTTGCGT
GTCATGAGATGTCAGGAGAACAAAGTCCAACGCTACAAAAAATTAATTTT
ACGTGT
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Coding sequence (CDS) from alignment at CM002461.1:1010317..1011722+

>rna3701 ID=rna3701|Name=rna3701|organism=Nannochloropsis gaditana|type=CDS|length=1110bp|location=Sequence derived from alignment at CM002461.1:1010317..1011722+ (Nannochloropsis gaditana)
ATGAAGAACGAGGCTTCACAAGAGCTAGCGTCGGGCGCAGGGAATTTCAG
AAATGGCAGTCGAATGTCACCTCCTTTGTCTCGCTCACCCATGAACCGTG
CAtcgcccccctccattcATGATCATGGTCGACATACGCCTCCGATTCCC
GAAGCATCTCTTAAGAACATCGACCTTGGAGGCGGGCATGTAGCTCCTCA
TCAAGCAATAAGAAGGCGGGACCACTTGTCGCCATCTTTTGTGCTGTCGA
AGCAGTATCCAATACCGGAAGTGCAGGAATTGACGGCCGTCgacggaaga
ggacagggggcTTCGTCAGCATGGAGGCTCGCTTTAGCGCAACTCAAGCG
TTTCGACATTGAATGGGTAATCAGTTTTCTCCTCATAATTTTTACATGCT
CAGCTACAGCCATTTTTACGCGCGACAAGGGTTGGTTTCTCCTCACCGCG
CCATTGGTGGGTTTTCCATTGTCCAATGCGTTCGCGTCGTTCAACATCGG
CCTCTCCACCTATGTAGCCGAGGCTTACGGCGGTGACGAGCGTTTGACAT
TGTATCGACACGTGGGGAGAATATCAGAGCTTTCTCCGCGCGCAGGGAGC
ATCGCAATATACCTATACGTGTGCCTGGTCTTTTCATTGCTTCTATCGGT
GATCCTGCTTTGGTATATCGCCTTGTTCTACCAGTATTTGAAAAGCAGCG
AGGTATTGCCCTCAAAAGAGTCAGCTGTGCGACTGTTTGGTCTAGGTGCA
CTGACACTTGGGCTCCTGCTGTCAGCGCTTGGCACAGGATCTTTTCGGGC
CGTCATATGGAACGATATGCGGCACCGTCGCAACAGCAGCGAAAGTGTGA
ATGGCGCTGACGCCTCCCCGAGTTTCACAGACATTGATACGGGGGCACTA
GCTCTTCGTAATGGGTACGCTTACGGTTCTACCGTCATTACCTGGCTCCT
GTGGATCATCGTCGGCTGTGTTTTCATCTCTCGCTCAAGCTGGTGGGCTA
AAggcgcgggcatggcggcGACACAGGCGCAAGCAGACATAGATATAGTC
AATGATGACATGGCattagaggaggagaataCGGATCAAGGTCCGCCTTC
CCATGTATAG
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Synonyms
Publications