rna37, rna37 (mRNA) Nannochloropsis gaditana

Overview
Namerna37
Unique Namerna37
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1110
Alignment locationCM002455.1:107982..109584 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100568g4.694.mrna
Orig protein idgnl|cribi|Naga_100568g4.694
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:107982..109584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100568g4gene35Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna37rna37-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30636.1cds37Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna37 ID=rna37|Name=rna37|organism=Nannochloropsis gaditana|type=mRNA|length=1110bp
ATGCTGGCGCGTGCGGTGCTTCCAACACGCAGCGGGTCGCTCGCGGCGGC
TTTCCTCAAGACTTCTTCCGCCACCATTATGCCGCCGAAACAATTGCAGG
GATTATCCCGCACTCTTCAGGTTAAGTCCTATCGTCAATCGACAGTGTTT
TACCGGGCAATGAGCACGACATTGAAGCCGGAGGAGAGAGCAGGCACTTT
CACCCCGGCTGCCCCTAGCACTACGACTCAGGAGAAAGAGGAGCTCCGCG
ATGGAGCCCGTTCTATCATCCATTTCAAGCTCAGCCCGAACCGGCACGCG
TTGAATGTGCCCAAGCTGGACCCAAAGGAGAAAGTGTGGGAGAATCCCAC
GCACCACAGCGTATGGACCAAGGAGGAAGTGGAAAACGTGGAAGTCACCC
ACTTGCCGCCTGCAGATTGGACGTCGCGCGTGGCCTACACCATTGCGCAG
ACCCTGCGCTTCAGTTTCGACGTGTTGGCCGGATTCAAATTCCGAAAAGC
GACGGAAGACATGTATCTGAACCGTATGGTCTTCCTCGAGACCGTAGCAG
GGATTCCGGGGATGGCTGCGGGTATGATTCGTCATCTTCACAGCCTGCGT
CGGATGCAACGAGACCATGGCTGGATCCACACCCTCTTGGAGGAGGCGGA
GAATGAGCGAATGCACCTCCTGACCTTCATGCGCTTGAAGCGCCCGGGGC
CCTTGTTCCGGGCCGCGGTTTTGGTGGTGCAGGGCGTCTTTTTCAACGTA
TTCTTTCTTTCCTACCTCATCAACCCGAAAATCTGCCACCGCCTCGTCGG
GCACATCGAAGAGGAAGCTGTCCGCACATACACGCATATCATCGAGGAGA
TGGACGCAGGACAGCTCCCCCTCTTTAACCACGTCATTCCCCCGCCCATT
GCCGTGTCATACTGGAAGCTAGCTCCCGATGCCACCTTCCGGGACCTCCT
CCTTGCCATTCGAAAGGACGAAGCGACGCACCGGGAGGTGAACCATACCT
TCGCGAATTTGAAGGAGAACGACGATAATCCCTTCCTAGCTGAGGAGGAG
TACCGTGCGAAGATCACGACCATGGGCCAACCCACACCTGTTGCCGAGAA
AAAGGCGTAG
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protein sequence of rna37

>rna37-protein ID=rna37-protein|Name=rna37|organism=Nannochloropsis gaditana|type=polypeptide|length=349bp
MQLHLYFHSFFLAGIMIGFSLPQPVACQALQGVENRGMAANRALRPRSIQ
ENIVEGVQQPQENLLAMDGEQDLPNVIDADLDIGLEEKISRISIDADDHA
GTRLVKTEQTVQDEARLRSQHSSNPRFLAAALGKQTNPLSRSFPLASKDL
EMSSTGINSPTLSSSLGSPPIPPRRLQQTIEHLARRAPDPLEPKVMPSVS
RKEGSAWAETTRTGKSTFSLFESEEKGMKVRERAIPTFQKAIEVDAAGQS
LPTDLLSESQFLKGKRQDGRGSLPTLGKALDSLVTGEDFKGKDTGVESDR
EGLLKMQAGDNGQFFRNVEKAATKGSMKAGESVEEEKDMTGKNPFMRLR
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mRNA from alignment at CM002455.1:107982..109584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna37 ID=rna37|Name=rna37|organism=Nannochloropsis gaditana|type=mRNA|length=1603bp|location=Sequence derived from alignment at CM002455.1:107982..109584- (Nannochloropsis gaditana)
GGAGACTTTTCTCATCCTCGGTCGAAGATGCAGTTACATCTATATTTTCA
TAGTTTTTTTCTAGCCGGTATCATGATTGGCTTCTCGTTGCCTCAACCTG
TAGCCTGCCAAGCGCTTCAAGGAGTGGAGAATCGCGGGTAAGGGTAATGG
CGGCATCCGGACATACTAATAGAAGATGCGCGTCAAATGATGGCCAGAGA
GAGATTCAGTGTGTCTATGGCAAGCTGCTACTGGCGGAGGAAGGTTATTT
GGTTGTCAGGTTCCGTGGTGTCAGGAGGCGTCCTGGCCCTGAGCGAGAGG
GGGAAGATTCTTAAAAAAATATTTTTTTTGAGAAGGAGAATGCTTCCTAC
TGTTTTCTGTTCTCCTCAAACTACCCCTTAAACACGGTAGGATGGCCGCT
AACCGTGCCCTGCGGCCGCGATCTATCCAAGAAAACATAGTAGAGGGGGT
GCAGCAACCACAAGAAAATCTGCTGGCAATGGATGGAGAGCAAGACTTAC
CTAATGTCATCGACGCGGACCTAGACATAGGTCTCGAAGAGAAAATCTCA
CGAATTTCAATCGATGCGGATGATCATGCTGGGACGAGGCTTGTTAAAAC
AGAGCAAACTGTCCAAGATGAGGCACGTCTTCGCTCTCAACACTCTTCAA
ATCCACGTTTCTTGGCAGCAGCGTTAGGGAAGCAAACAAATCCCTTATCA
CGATCCTTTCCACTAGCATCAAAAGATCTGGAAATGTCGTCAACCGGCAT
AAATTCCCCCACTTTATCGTCCTCCCTCGGTTCCCCGCCTATCCCCCCTC
GGCGTCTTCAGCAAACCATCGAGCACCTGGCCAGACGCGCTCCGGATCCA
TTGGAACCTAAAGTCATGCCAAGCGTCAGTAGGAAGGAAGGAAGTGCGTG
GGCGGAGACGACGCGGACAGGGAAATCTACTTTCTCACTTTTTGAGTCTG
AAGAAAAAGGCATGAAAGTAAGGGAACGGGCAATACCGACGTTCCAGAAG
GCGATAGAAGTGGACGCTGCAGGCCAAAGCCTTCCCACTGATCTACTCTC
TGAAAGTCAATTTCTGAAAGGAAAAAGGCAAGACGGCCGCGGCTCATTGC
CGACTTTGGGGAAAGCACTCGACTCGTTGGTGACAGGAGAGGATTTTAAG
GGTAAAGACACCGGTGTGGAATCTGATCGGGAAGGGTTACTGAAAATGCA
AGCGGGTGATAATGGACAATTTTTCCGAAACGTTGAGAAGGCGGCAACGA
AAGGATCAATGAAGGCTGGAGAGTCGGTGGAGGAAGAAAAGGATATGACG
GGGAAAAATCCGTTCATGCGTTTAAGATAGAAACCATCCATCAGTTGGAG
GAGAATGTCAGGATGCGAATGTAAGGAACTTCGTGACAGAGGCTGCTATA
TTTGAAAGACAGGAGGGGGAAACGGCCAATGCGAGGCGAGGATGCAAGCC
CTTCACGAACGTAGTGGTGAGGAGGTTGGTTCATCTCAAGTCTTGAGCGT
CTCATAAATAAAAGCCACGACAAGAAAAGAAATGTATATCATGACAAAAA
CAAAGCATGAGCTTTACGATAATGTCAATATTTAATGTCGGCCTTGATAA
ATG
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Coding sequence (CDS) from alignment at CM002455.1:107982..109584-

>rna37 ID=rna37|Name=rna37|organism=Nannochloropsis gaditana|type=CDS|length=2100bp|location=Sequence derived from alignment at CM002455.1:107982..109584- (Nannochloropsis gaditana)
GATGGCCGCTAACCGTGCCCTGCGGCCGCGATCTATCCAAGAAAACATAG
TAGAGGGGGTGCAGCAACCACAAGAAAATCTGCTGGCAATGGATGGAGAG
CAAGACTTACCTAATGTCATCGACGCGGACCTAGACATAGGTCTCGAAGA
GAAAATCTCACGAATTTCAATCGATGCGGATGATCATGCTGGGACGAGGC
TTGTTAAAACAGAGCAAACTGTCCAAGATGAGGCACGTCTTCGCTCTCAA
CACTCTTCAAATCCACGTTTCTTGGCAGCAGCGTTAGGGAAGCAAACAAA
TCCCTTATCACGATCCTTTCCACTAGCATCAAAAGATCTGGAAATGTCGT
CAACCGGCATAAATTCCCCCACTTTATCGTCCTCCCTCGGTTCCCCGCCT
ATCCCCCCTCGGCGTCTTCAGCAAACCATCGAGCACCTGGCCAGACGCGC
TCCGGATCCATTGGAACCTAAAGTCATGCCAAGCGTCAGTAGGAAGGAAG
GAAGTGCGTGGGCGGAGACGACGCGGACAGGGAAATCTACTTTCTCACTT
TTTGAGTCTGAAGAAAAAGGCATGAAAGTAAGGGAACGGGCAATACCGAC
GTTCCAGAAGGCGATAGAAGTGGACGCTGCAGGCCAAAGCCTTCCCACTG
ATCTACTCTCTGAAAGTCAATTTCTGAAAGGAAAAAGGCAAGACGGCCGC
GGCTCATTGCCGACTTTGGGGAAAGCACTCGACTCGTTGGTGACAGGAGA
GGATTTTAAGGGTAAAGACACCGGTGTGGAATCTGATCGGGAAGGGTTAC
TGAAAATGCAAGCGGGTGATAATGGACAATTTTTCCGAAACGTTGAGAAG
GCGGCAACGAAAGGATCAATGAAGGCTGGAGAGTCGGTGGAGGAAGAAAA
GGATATGACGGGGAAAAATCCGTTCATGCGTTTAAGATAGATGCAGTTAC
ATCTATATTTTCATAGTTTTTTTCTAGCCGGTATCATGATTGGCTTCTCG
TTGCCTCAACCTGTAGCCTGCCAAGCGCTTCAAGGAGTGGAGAATCGCGG
GATGGCCGCTAACCGTGCCCTGCGGCCGCGATCTATCCAAGAAAACATAG
TAGAGGGGGTGCAGCAACCACAAGAAAATCTGCTGGCAATGGATGGAGAG
CAAGACTTACCTAATGTCATCGACGCGGACCTAGACATAGGTCTCGAAGA
GAAAATCTCACGAATTTCAATCGATGCGGATGATCATGCTGGGACGAGGC
TTGTTAAAACAGAGCAAACTGTCCAAGATGAGGCACGTCTTCGCTCTCAA
CACTCTTCAAATCCACGTTTCTTGGCAGCAGCGTTAGGGAAGCAAACAAA
TCCCTTATCACGATCCTTTCCACTAGCATCAAAAGATCTGGAAATGTCGT
CAACCGGCATAAATTCCCCCACTTTATCGTCCTCCCTCGGTTCCCCGCCT
ATCCCCCCTCGGCGTCTTCAGCAAACCATCGAGCACCTGGCCAGACGCGC
TCCGGATCCATTGGAACCTAAAGTCATGCCAAGCGTCAGTAGGAAGGAAG
GAAGTGCGTGGGCGGAGACGACGCGGACAGGGAAATCTACTTTCTCACTT
TTTGAGTCTGAAGAAAAAGGCATGAAAGTAAGGGAACGGGCAATACCGAC
GTTCCAGAAGGCGATAGAAGTGGACGCTGCAGGCCAAAGCCTTCCCACTG
ATCTACTCTCTGAAAGTCAATTTCTGAAAGGAAAAAGGCAAGACGGCCGC
GGCTCATTGCCGACTTTGGGGAAAGCACTCGACTCGTTGGTGACAGGAGA
GGATTTTAAGGGTAAAGACACCGGTGTGGAATCTGATCGGGAAGGGTTAC
TGAAAATGCAAGCGGGTGATAATGGACAATTTTTCCGAAACGTTGAGAAG
GCGGCAACGAAAGGATCAATGAAGGCTGGAGAGTCGGTGGAGGAAGAAAA
GGATATGACGGGGAAAAATCCGTTCATGCGTTTAAGATAGATGCAGTTAC
ATCTATATTTTCATAGTTTTTTTCTAGCCGGTATCATGATTGGCTTCTCG
TTGCCTCAACCTGTAGCCTGCCAAGCGCTTCAAGGAGTGGAGAATCGCGG
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Synonyms
Publications