rna3689, rna3689 (mRNA) Nannochloropsis gaditana

Overview
Namerna3689
Unique Namerna3689
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002461.1:985172..985762 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101275g2.3016.mrna
Orig protein idgnl|cribi|Naga_101275g2.3016
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:985172..985762 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101275g2gene3553Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3689rna3689-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26993.1cds3680Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3689 ID=rna3689|Name=rna3689|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGAGCGGCGCCGAAACAAGTACACTCGATGCCGTCGCAAAAGTGGGCGC
GGGAGAAAACGCGCCCCGACATCCTCACGTGTTGGCCCTCCCCATCATGC
GCCGTCCGTTTTTTCCCGGCCTGGTCCAAGCGGTGAATATTACCAGCCCC
AAGGTATTTGAAGCGATTTCCTCCATCAAAAACGACTACGGGCACTATTA
CGTGGGCACATTTTTGCGCAAGGAGGACCCGGGGGAAGGCTCGCCCCCGG
AAGTGATCACGGACCTGTCGCAGATTTATCAGACGGGCACGCTAGCCCAA
GTCCAGAACACCATCCCGCTCGGCATGGGGGGCCAGGTGGTGCTGGTGTC
CCACAGGCGGATCAAAATCGACGGCTCCATCGCGCTGGGCCCTCCTTTGC
GCGTGAAGGTGTCGCACTTGGAGGGGAGGGCCTACGATCCCGACAGCACC
CTGATCAAGGCGTATTCCAACGAGTGCGGGAACTGGTGA
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protein sequence of rna3689

>rna3689-protein ID=rna3689-protein|Name=rna3689|organism=Nannochloropsis gaditana|type=polypeptide|length=104bp
MPPILLEDAAIDALFTEVEACAREDDGEVHPLPVRLLQDSVSGEMVALPP
AIAQAGDESYFFERIAATTTPFGLPVPGARELLMERYLEIEALLDDMVRD
GRST
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mRNA from alignment at CM002461.1:985172..985762+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3689 ID=rna3689|Name=rna3689|organism=Nannochloropsis gaditana|type=mRNA|length=591bp|location=Sequence derived from alignment at CM002461.1:985172..985762+ (Nannochloropsis gaditana)
TATTCCAGGCAATGCATCATATCCTGCCTCACGCATAAGAAATTTTCCAT
CGAAACCACCCAGCCCATTGTTGGAGCTGCACGTCTCGTCTTTTACTTCT
TGCTTCATTCCTAACCGCTTCCTGCTCGCCTTTTCTACTCGCGCGGACAC
GGCCAGCGACTTGCTGTCTCCAAGCCCCAACACCTGCTCACTTTGGCGTA
CGCCCATCCCTGCGAAATACATACAAACGGACACAGACACGTTATAGGGG
TGTGAACACGAATAATGCCGCCCATAttgctggaggacgcggcaATCGAC
GCATTATtcacggaggtggaggcttGTGCTAGGGAGGATGATGGGGAGGT
ACACCCGCTACCCGTCCGATTACTGCAAGACAGTGTTTCAGGCGAAATGG
TGGCATTGCCGCCCGCCATCGCTCAAGCCGGGGATGAAAGTTATTTTTTC
GAGCGCATTGCAGCAACTACCACACCTTTTGGGTTGCCGGTGCCGGGAGC
TCGGGAGCTGTTGATGGAGAGGTATTTGGAAATCGAGGCCTTACTCGACG
ACATGGTACGTGATGGGCGGTCGACCTGAGTTGTAATCGCG
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Coding sequence (CDS) from alignment at CM002461.1:985172..985762+

>rna3689 ID=rna3689|Name=rna3689|organism=Nannochloropsis gaditana|type=CDS|length=315bp|location=Sequence derived from alignment at CM002461.1:985172..985762+ (Nannochloropsis gaditana)
ATGCCGCCCATAttgctggaggacgcggcaATCGACGCATTATtcacgga
ggtggaggcttGTGCTAGGGAGGATGATGGGGAGGTACACCCGCTACCCG
TCCGATTACTGCAAGACAGTGTTTCAGGCGAAATGGTGGCATTGCCGCCC
GCCATCGCTCAAGCCGGGGATGAAAGTTATTTTTTCGAGCGCATTGCAGC
AACTACCACACCTTTTGGGTTGCCGGTGCCGGGAGCTCGGGAGCTGTTGA
TGGAGAGGTATTTGGAAATCGAGGCCTTACTCGACGACATGGTACGTGAT
GGGCGGTCGACCTGA
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Synonyms
Publications