rna3682, rna3682 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3682
Unique Name	rna3682
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1530
Alignment location	CM002461.1:963199..965289 -

Link to JBrowse

Properties


Property Name	Value
Product	adenine guanine permease azg1
Orig transcript id	gnl\|cribi\|Naga_100079g16.10201.mrna
Orig protein id	gnl\|cribi\|Naga_100079g16.10201
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:963199..965289 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100079g16	gene3546	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27012.1	cds3673	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3682	rna3682-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:963199..965289-
coding sequence from alignment at CM002461.1:963199..965289-

mRNA sequence

>rna3682 ID=rna3682|Name=rna3682|organism=Nannochloropsis gaditana|type=mRNA|length=1530bp
ATGAGGAAGATGCAATGGAATTTCAATATGGGTATTTTCTTCTTGTTCTA
CTTATGCGCTTCCAAATTTCAGAAGATCTTACACGTCAAAGGGTCAATCT
TGCCTGGGAGGTCGACTCGTGTACATTACTGCTTTCCTGCAACCCTCGGC
AATATGCGACTGAGTAGCGCGGGCGTCAAGCGTTTTTATAATCCTGTACG
GCTGAATTTCACTGAATGGGGTAACTGGGAAACGAGTATACTGGAGGCAG
TCGGCAATCGAAAAGCCTTGCTTATGACGTATCCACAAGCTGAGGCATCT
GGAGGTTTGTTCTCGAACCTTCGCGCCGTGTTGGGTGATGACAAGATGTT
ATGGGTGGCATGTCCGGAGTTGCCCGATGTCAATGAGCACCGCGGTATGC
ACCGTAGGGTCCGAAATTTTGTGCGTGACCGCGACAATATCGTCATAGTC
GCCGTGGGTGGCGGAAGTGTCATTGATCTGGCCAAGGTTATGAGTCTGGC
CCGCAGTCAGGTGGATTTTGAGGACATCTTTACGGAGCGCATCGCGGCGG
GCAAGCACATTGATCGCCTGTCCCACGTCCCCGTAGTAGCCGTGCCTACC
ACAGCGGGAACGGGCTCGGAAGTAACCCCATGGGCTGCCGTTTGGGATAC
GCAAAGCAAGAAGAAGTGGTCCGTACAAGGCCGTAGCCTATGGCCGGAAA
GAGCGATCCTTGACCCTTCGTTGAGTGCCTCCTGTCCACGGGAGGTGACT
CGAAATAGCGCCTTGGACGCCCTCAGCCACTCCTTCGAAGCCATATGGAA
CGTCAACCACAACCCGGTCTCGGACGTCTTGGCCGTTGCGGCCGCGAAAG
GAGTGTTGCGACATTTGCCCACGGTCATTGCCCAAGATCCCCGTGATGGC
GGCGACGATGAGAAGGCCCTCCTTCTGGCCAGGACCGGGCTAAGCGTCGC
CTCCCTACGGGCAGGTTTGGCATTCAGCAACACTGAAACAGCCCTTGCCC
ACGCAATTTCCTACCGGATCACCATTGAACAAGGCGTCAAGCACGGGGCT
GCGTGTTCTTTCTCCCTTCCCCGTGTGCTGCGTCTCGCTCTCGAACAAGC
GGATCCCACCCGCGATGCCCTCTTCCAGGAAATTTTCTCGGATTTTATGA
CAGCAGACAAACTGGCCGGACGAAGGCCTCGAGAGCCTTACGAATATTTG
GAACATTTTTTGAACGAGGATGCCGGCGTGTCTACAGCCTTGGAGGACTA
TGGCATATCTGGAGAGGTAGAGTTCCAAGAGCGGATCCGGCAGGCCTTAT
GGCATCGGCCTGGGATTGACCAGACTGTCCTCACGGTGCCACCGAGAAAC
GAGGGCTGGATGGATGGAAGCTCACGGGGGGGGAGCACCTTGTACAGGGA
GGAAACAACACGAAGGCGTGAAAGGAAGGCAAGTATGGTGAAGGAGGAGG
AAGGGGAAGAAGGCGGGCGTGGGAAACGACTGTATAATTGGAAGGGCCTG
CGTCAGGAATGGAGGATTTCTCAGGGGTGA

protein sequence of rna3682

>rna3682-protein ID=rna3682-protein|Name=rna3682|organism=Nannochloropsis gaditana|type=polypeptide|length=696bp
MLETPPHLLAFSRCKYSLFPFAKRGRLCFVWGRGLHQNTQVAAFSRHKSR
QRLTHRPTIMPTSGVDAHAAVKTERPCGPRGNSPSIVLDGSDGSVPLPLL
AAEGTPPVLAAVPRPPLEVNDPPSPSMSPPSFLARWDAIVARSWVGRHFK
LEERGTCFSREAMGGWMTFLTMSYITPLSASIVAETGATCDIHAPDNVYE
SCKFLVRHQLLTAVAVASFVSSLVMGLWANLPFLLAPGIGTSAYFAYSVV
GVRGLGHVPYRTGVTAVVLEGVIFLLLSITGLRSRAVQSLPSSIKLAMSG
GIGLFLAFIGLQAPEGIGLITASPDTLVTLGGCPPAARSPVDDGAGTYVC
MEKRMQSATTWVGLTALLLMTTLLEKGVRSAVGVVILLVSLLSWVRDTPF
SFFPRDGPDGVGEARFQAFRKLISIQGMADVAGQWEFGRLGSPQVWLAVL
TFLYTDVLDTTGCLYSMVRQAGMVQEDGRFEGDGAAFCVDALGTILAGSL
GLPPVVVFMESAVGIECGARTGLAAVVGSLGFLLSVIFTPILASIPPFAT
GAALILVGCILMEHLSHIQWTNRRLAMPAFLTAILMPLTYSIAYGVIAGI
VTAIIIHLLLKFFDKVSASLGRFASRGVGRCRLSSSQQKDHMREKENLDN
SEICRNVKHIEELEYLDCIAHPEGQSEASHHILAIGEVPPAFELDK

mRNA from alignment at CM002461.1:963199..965289-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3682 ID=rna3682|Name=rna3682|organism=Nannochloropsis gaditana|type=mRNA|length=2091bp|location=Sequence derived from alignment at CM002461.1:963199..965289- (Nannochloropsis gaditana)
ATGCTGGAAACTCCGCCGCATCTGCTTGCTTTTTCTCGGTGTAAATATTC
TCTTTTCCCCTTTGCGAAAAGGGGGCGGCTCTGTTTTGTGTGGGGACGAG
GCTTACATCAAAACACACAAGTAGCTGCCTTTTCCCGTCACAAATCGAGA
CAACGCCTCACACATCGCCCAACCATCATGCCCACCTCCGGAGTGGACGC
ACATGCAGCAGTGAAGACGGAGAGACCATGTGGACCTCGAGGCAATTCTC
CCTCCATCGTTTTGGATGGCTCGGACGGCAGCGTGCCACTGCCGTTATTA
GCAGCCGAAGGCACCCCGCCGGTACTGGCAGCAGTCCCCCGGCCTCCTCT
GGAAGTCAACGACCCTCCTTCTCCTTCCATGTCTCCCCCCTCTTTCCTTG
CGCGTTGGGATGCCATCGTGGCCCGTAGCTGGGTCGGGCGACATTTTAAG
CTTGAAGAACGGGGCACGTGCTTCTCCCGGGAAGCGATGGGCGGGTGGAT
GACCTTCCTTACCATGAGCTACATCACGCCCTTATCCGCCTCCATCGTGG
CCGAGACGGGCGCCACCTGCGACATTCATGCCCCCGACAACGTCTATGAA
AGCTGCAAATTCCTTGTCCGCCATCAACTTCTCACGGCCGTGGCCGTTGC
TTCCTTCGTCTCCTCCCTCGTGATGGGCCTGTGGGCGAACCTGCCTTTCC
TCCTCGCGCCCGGCATTGGCACCTCTGCTTACTTTGCCTACTCCGTGGTC
GGTGTTCGCGGTTTGGGTCATGTGCCTTACCGGACGGGGGTAACGGCCGT
CGTCTTGGAGGGCGTCATTTTCCTCCTCCTTTCCATTACCGGGCTGCGAT
CCCGGGCCGTGCAATCCCTCCCGTCCTCCATCAAACTCGCCATGTCGGGG
GGCATCGGTCTCTTCCTCGCCTTCATTGGCCTGCAAGCCCCGGAAGGTAT
AGGGCTCATCACCGCCAGCCCCGACACTTTGGTCACCTTAGGTGGCTGTC
CTCCCGCCGCCCGGAGCCCCGTTGATGACGGGGCCGGAACCTACGTGTGC
ATGGAGAAAAGGATGCAGTCTGCGACCACCTGGGTGGGTCTGACGGCACT
CCTCCTCATGACAACACTGCTGGAGAAAGGAGTACGGAGCGCGGTGGGCG
TCGTCATACTCCTGGTGAGCCTCCTGTCTTGGGTGCGGGACACGCCTTTC
TCCTTCTTTCCCCGGGATGGGCCCGACGGGGTGGGGGAAGCACGCTTCCA
AGCCTTTCGAAAGCTTATTTCTATTCAAGGCATGGCTGATGTAGCGGGTC
AGTGGGAGTTCGGAAGGTTGGGGAGTCCGCAGGTGTGGTTGGCTGTCTTG
ACCTTCCTCTACACCGACGTCCTGGACACGACTGGATGCCTGTACAGCAT
GGTCCGACAGGCAGGAATGGTGCAAGAGGACGGGAGATTCGAGGGCGACG
GGGCGGCTTTCTGTGTGGACGCTCTGGGCACGATACTGGCAGGGAGTCTC
GGATTGCCCCCCGTGGTGGTATTCATGGAGTCAGCGGTCGGCATCGAATG
CGGGGCGCGCACGGGCTTGGCTGCCGTGGTGGGCTCGCTAGGATTTCTTT
TGAGCGTCATTTTTACCCCGATATTGGCCAGTATTCCTCCTTTTGCGACC
GGTGCGGCCTTGATCCTTGTAGGGTGCATATTAATGGAACATTTGAGTCA
TATTCAATGGACGAATCGTCGTCTGGCCATGCCGGCGTTTCTAACCGCCA
TCTTGATGCCTCTGACGTATTCCATTGCCTACGGCGTGATTGCAGGCATA
GTGACTGCAATTATTATACACTTGCTACTCAAATTCTTCGACAAGGTGTC
TGCCAGCCTGGGACGTTTTGCTAGTCGGGGAGTCGGGAGATGTCGACTGT
CATCAAGCCAGCAAAAGGATCATATGCGGGAAAAAGAAAACCTTGATAAT
TCAGAAATTTGCCGGAATGTGAAACATATAGAGGAATTGGAGTATTTGGA
TTGCATAGCTCATCCCGAAGGCCAAAGTGAGGCGAGTCACCACATCTTAG
CAATTGGTGAAGTTCCACCGGCATTCGAGCTCGATAAATAG

Coding sequence (CDS) from alignment at CM002461.1:963199..965289-

>rna3682 ID=rna3682|Name=rna3682|organism=Nannochloropsis gaditana|type=CDS|length=2091bp|location=Sequence derived from alignment at CM002461.1:963199..965289- (Nannochloropsis gaditana)
ATGCTGGAAACTCCGCCGCATCTGCTTGCTTTTTCTCGGTGTAAATATTC
TCTTTTCCCCTTTGCGAAAAGGGGGCGGCTCTGTTTTGTGTGGGGACGAG
GCTTACATCAAAACACACAAGTAGCTGCCTTTTCCCGTCACAAATCGAGA
CAACGCCTCACACATCGCCCAACCATCATGCCCACCTCCGGAGTGGACGC
ACATGCAGCAGTGAAGACGGAGAGACCATGTGGACCTCGAGGCAATTCTC
CCTCCATCGTTTTGGATGGCTCGGACGGCAGCGTGCCACTGCCGTTATTA
GCAGCCGAAGGCACCCCGCCGGTACTGGCAGCAGTCCCCCGGCCTCCTCT
GGAAGTCAACGACCCTCCTTCTCCTTCCATGTCTCCCCCCTCTTTCCTTG
CGCGTTGGGATGCCATCGTGGCCCGTAGCTGGGTCGGGCGACATTTTAAG
CTTGAAGAACGGGGCACGTGCTTCTCCCGGGAAGCGATGGGCGGGTGGAT
GACCTTCCTTACCATGAGCTACATCACGCCCTTATCCGCCTCCATCGTGG
CCGAGACGGGCGCCACCTGCGACATTCATGCCCCCGACAACGTCTATGAA
AGCTGCAAATTCCTTGTCCGCCATCAACTTCTCACGGCCGTGGCCGTTGC
TTCCTTCGTCTCCTCCCTCGTGATGGGCCTGTGGGCGAACCTGCCTTTCC
TCCTCGCGCCCGGCATTGGCACCTCTGCTTACTTTGCCTACTCCGTGGTC
GGTGTTCGCGGTTTGGGTCATGTGCCTTACCGGACGGGGGTAACGGCCGT
CGTCTTGGAGGGCGTCATTTTCCTCCTCCTTTCCATTACCGGGCTGCGAT
CCCGGGCCGTGCAATCCCTCCCGTCCTCCATCAAACTCGCCATGTCGGGG
GGCATCGGTCTCTTCCTCGCCTTCATTGGCCTGCAAGCCCCGGAAGGTAT
AGGGCTCATCACCGCCAGCCCCGACACTTTGGTCACCTTAGGTGGCTGTC
CTCCCGCCGCCCGGAGCCCCGTTGATGACGGGGCCGGAACCTACGTGTGC
ATGGAGAAAAGGATGCAGTCTGCGACCACCTGGGTGGGTCTGACGGCACT
CCTCCTCATGACAACACTGCTGGAGAAAGGAGTACGGAGCGCGGTGGGCG
TCGTCATACTCCTGGTGAGCCTCCTGTCTTGGGTGCGGGACACGCCTTTC
TCCTTCTTTCCCCGGGATGGGCCCGACGGGGTGGGGGAAGCACGCTTCCA
AGCCTTTCGAAAGCTTATTTCTATTCAAGGCATGGCTGATGTAGCGGGTC
AGTGGGAGTTCGGAAGGTTGGGGAGTCCGCAGGTGTGGTTGGCTGTCTTG
ACCTTCCTCTACACCGACGTCCTGGACACGACTGGATGCCTGTACAGCAT
GGTCCGACAGGCAGGAATGGTGCAAGAGGACGGGAGATTCGAGGGCGACG
GGGCGGCTTTCTGTGTGGACGCTCTGGGCACGATACTGGCAGGGAGTCTC
GGATTGCCCCCCGTGGTGGTATTCATGGAGTCAGCGGTCGGCATCGAATG
CGGGGCGCGCACGGGCTTGGCTGCCGTGGTGGGCTCGCTAGGATTTCTTT
TGAGCGTCATTTTTACCCCGATATTGGCCAGTATTCCTCCTTTTGCGACC
GGTGCGGCCTTGATCCTTGTAGGGTGCATATTAATGGAACATTTGAGTCA
TATTCAATGGACGAATCGTCGTCTGGCCATGCCGGCGTTTCTAACCGCCA
TCTTGATGCCTCTGACGTATTCCATTGCCTACGGCGTGATTGCAGGCATA
GTGACTGCAATTATTATACACTTGCTACTCAAATTCTTCGACAAGGTGTC
TGCCAGCCTGGGACGTTTTGCTAGTCGGGGAGTCGGGAGATGTCGACTGT
CATCAAGCCAGCAAAAGGATCATATGCGGGAAAAAGAAAACCTTGATAAT
TCAGAAATTTGCCGGAATGTGAAACATATAGAGGAATTGGAGTATTTGGA
TTGCATAGCTCATCCCGAAGGCCAAAGTGAGGCGAGTCACCACATCTTAG
CAATTGGTGAAGTTCCACCGGCATTCGAGCTCGATAAATAG

Synonyms

Publications