rna368, rna368 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna368
Unique Name	rna368
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3508
Alignment location	CM002455.1:895404..895979 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g127.1812.mrna
Orig protein id	gnl\|cribi\|Naga_100003g127.1812
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:895404..895979 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g127	gene355	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna368	rna368-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30295.1	cds368	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:895404..895979+
coding sequence from alignment at CM002455.1:895404..895979+

mRNA sequence

>rna368 ID=rna368|Name=rna368|organism=Nannochloropsis gaditana|type=mRNA|length=3508bp
AACAATACTTACGATATGTTGCATGTATCTTACCCTCTTTATACTCCCAC
AGGACTCAATTATCTATTTTGGACTTTAAGAGACTCCTCTCCAGCCGCGA
TCGACGGAAGTTGCGAACAGAAGGCTTGCAAGTCGCCGGCTGCCTGCACC
TGTTTGATCAATTTGACGCACTTCCACCCATCAATTTCTCAATAGAATGG
CTGTTGACGGCTTACTAGGGTGTACTTCTCAACGTAAGCGTCAACGCCCG
CTTCCGGCTTCTGACTCGTCCAAAAGCACTACTACAAACTCCGCTCCTCA
CAGAGGGGGTACGTGTCCCAAATCTGCCTCTCTGTCGAGCAGCGCCACCA
CTAACAGCATCTCAGGTAACCAAAAACGGATCCGCGTCGATGATATAAGC
TATGGGGCATCCATTGATGGAGATGCGATCGTTGTCGAGTACCTCAAATC
CGATGATCGTAAGACTGGCCGAGCAGCTGCTGCGGGCCAGGGGGGTTCCG
TGGCGTCGACAGACGAATTTCCTGTGGGCAAAGCACAAATTTCGACTCGT
CCCGGTGGTAAAACTCGGCTACGATGTCAGACGGTCAGGCAGGTAGAAAA
ACTGATATCAACCATGTTCAAGGAGCTAGACGTACTTTTGCGCGCCGAGA
GCGTAAATCGTCGTGTCATGTACCGGTGGAGCGGCGCTGAACGAAGCAGC
TGGTCCATGTTGCGAGAAGGAAAAATAAGCAATTGCACATGGGGCCGAGA
GCTCGTCAAACAATACATCGAAGACGCAATTGAGCTTGTGAGAAGCACTC
TTGCGAGAGGAAACTGGGACAATTCAGTAGAGGCCGCACGGCGTCTCACA
CTTCAGTACATAGTAAAGGCTGCTGAGCGCTCCATACTCGAATATGAGCC
CGTCCTTCATGAAGAGGTCATGAACACGCTTGGGAACCTTTGGTTTGCAC
TTCTTCCGTACATGCCTCCACCGCAGCGCCATCAATTTCGACGCTTGATA
GCTCGCATCCGGAAGATTATCGGCAGCATCACATCGGGAGGTGGAAGAGG
ATTTCAAAGTGCTGTCGATAACGACGTGGATCAAGGATCCTTTTCAAACA
TTCTCGCAAGCGGTGGCGCCCGGGGCGCCGCATTCTCAGGACACTGTTTA
CTTCCACAGCCGACGAAAGAAACTCAGCATCAGAAGCGGCAGTATAATAG
TGGCGGTAGTCTAGCCGTGTCTTTTCGCTGTGCATTGGAGTTCGCCAAGT
TAGACCTCAGCCCTGAGGCACTGGCAGCTCAAGGACATCAAGAAACGCAG
AAAAAGTTAGCCGCGCTACTGGTGTCTGACGTGTATGAATGCGATGCTTA
TATATGCCTTTGGAAAGTTTCGGAGGTCCTAGCAGGCTTGAAGGGCTTTC
AGGCTCTATGCCAGGAATTCCGATTGAAGGCCCTCGACGCAGAGATGTGG
CGGTGCATGCTTTTGGAGGAGCAAGAATCGCGTCAGCGTGGTGAACACAG
TAGCGACGAGGATGATGATGATCATGACATTTATGACAGCGAGGAGGAGG
AGAAGGAGGGGGGCAATGAAGGTGACGACGAGTGTTGCAACAGTGACGAC
GGAGGACGTCTAAGTGTGAACAAGGTTGCGGCTATACCCGGCATCACAAG
CCTGAAAAATATGCCTATGATACATCATCACCGCTCCGTTACATGTCAAA
GTCCATGTAAAAGTGGTCTTGATGAACTTCTGTCGCCACCTCCTGTCTAC
CCTCCATATGATGCTAGGAACCACAGCGAAATCAATCTTGGCCCAATGCA
AGCGCTGATATCTGGTTCACATAGGAGTGCAAAGCCTATGAAAATCGTCA
ACACAACGTCACCTCTTTCTTCCAAATTGACCAGTGTCCGCCGCTCCTCA
GTACACGAGGGAGAGGATAAAAATTCCGTCGGACAACCGGACCGGTGGTG
CACAAAAGCCGCACTAGAGGATGGAGAAACGGACAATTTTATGGAATTTA
TGAGCCTACATCAACACGAATACCGAAGGGTCGTGACTCCCGACTTCATT
TTACGTGTCTGGACGTTTTTGGAAGCATTTGATTCTCAGATCACACATGT
CGTTTCGAAAGGTCCCGAGTCCAAGAGCGGCGTGTCATTCTCCATATCTA
CTTCAAACCTGCTATTTGTACGAGCACGGCCATTTTTATATCGTGTGGCC
ACAGTCATTCCTGCTGGGCAGCTGAATGACTACCTGGGTCTGATGTCCGA
TAAGTTTGGTTACAGCGGCACGCTCCTCCTTATAAAACCGCTCATAGTGG
AAGAGCAGGACTTTCATTCGACGAGACGTGTTCGTCAAGTTTTAGAATGG
GCTGTCGATTACGAGCAGGGACTGCAACTGGATTGTTTTTCGCGTCTAAT
TCTTCCTCACCTTCGATCCAGGACGCAACTGGAGCTTCTCGCACGCCGTA
CGATTGCGCATGGTATACGTTCGTTTTCAATAATTGATCGCGCATTAGCT
CGGGTCCCAAGCAAAAGTTATGAAGGCTTAGCAGTGGATTTGTGTCGGCA
AGCGGTGCAACATCTCTGTCCTGTGAAATGCCCAGCAGCTTTGCTGGTAC
TCCGGGCATTGCAGGGTATGCCTAGCTTGGGTCTGTACCTAAAATGCCGA
GCTTGTTTCTCAGATCCGCTCCCCATGCTTGTTCGGCCGCTTCTTCAAAA
GCTCGATCCGCTCGGCGAGCTGTCGATCGGCATTCGACTTGTCGAGGGGA
TCGTCCAGTCTGCTGTCAATTCCATAATGGCTTCTGTAGATACAAGTTTA
CGGCTGTGCGAAAGCGAACGTCTTGCAAAGGCTAATCGCTGGTTAGAATT
TGCGTTGGCTGGTGTACGTGGCGGGCAGTTTCCTCCCAGCGTTTTGGATC
GCCTTTTTTCGCACCAAGAGTTCCTATTGGCTGCTCTAGGCCCACCATCA
CCGGAGCCAAAATCCGCAGAGGTTGTGGTTCGCTGCTTCTCCAAACTAGC
TGAATTGAGTCAAACAATGCATGGACTTTTGGGACCTCTGCAAAGCATAA
TGAGGACTTATGACTCTCTTCTGCACAAAAGTGAAATAGCCAAAGCTGCT
AAAAACAAAGGCATCGAGGTGGATGTTTCAGTTGGAGAATACGGCTACAG
ATGTTTTAAGGCCACTGCACGCAGAACATAAAATTCGAGGAAAATGTTAT
GAGAAATACCAAAGTTGGCTGTGTCGTTATGATATATCATAAAATAGCAA
TGCCGCATTCGTACGCAAATTAAAAATAACTTTAGGCAAGAAAGTGTTAC
AAAAAACCTACTATGAAGTAGTGCTCATATTCCAGCTTTATTCCTGTTGG
TATCCTCTTAGTCTTGAAAGTGCACAGATATGGGCGACTTAAAGTGCTTT
TACTCGGCTAGTTTTGAATTGCGACTTTGTTCGCTTTCGTACCCATTACC
ATTTTCGCATTCTTACCCATTAACCACTCCTAGAAACGACACATTCACTG
CTCAGGGC

protein sequence of rna368

>rna368-protein ID=rna368-protein|Name=rna368|organism=Nannochloropsis gaditana|type=polypeptide|length=120bp
MGRKRFMTMQTRNSPLHTHGILKCRNTQQMDIAWRSLSVSLMLRWAKKEK
RNSGDNMDEIGLVFLYVSSFVHLRFPVFFFFFVLSWHGCLKPVGPKEGNK
KSKRAIHVVVARCSHIARLS

mRNA from alignment at CM002455.1:895404..895979+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna368 ID=rna368|Name=rna368|organism=Nannochloropsis gaditana|type=mRNA|length=576bp|location=Sequence derived from alignment at CM002455.1:895404..895979+ (Nannochloropsis gaditana)
GAACGCCACCGCACGGCCCGCCACCGTCACATGCCAGCTGGCGGTCCAGC
GAGCCTTCTGGATTTTGATGCTCTTCACCCACCACATCTGCATTTTGGGT
GattggagaaaaagagaggtaTGTAAATAGAAACAATATGGGGCGAAAAC
GATTCATGACCATGCAGACAAGAAATTCACCGTTGCACACACACGGCATC
CTGAAATGCAGGAATACACAGCAAATGGACATCGCTTGGCGGTCCCTGTC
AGTGTCTCTTATGTTGCGATgggcaaagaaggaaaaacgAAATTCAGGAG
ATAATATGGATGAAATTGGTTTGGTCTTTTTATATGTATCCTCCTTCGTA
CATTTACGTTTCCCagtcttcttctttttctttgtattGTCGTGGCATGG
TTGCTTAAAACCTGTTGGCCCGAAAGAAGGAAACAAAAAGTCAAAGAGAG
CTATTCATGTCGTTGTTGCCAGGTGTAGCCATATTGCCAGGTTGTCTTAA
TCGTTGTGTTCATACGGGGACATACCACCTGCGAACCTGGTTGTCAAAAA
ATTTGTTTGCTCAGAGAAATGTTTTC

Coding sequence (CDS) from alignment at CM002455.1:895404..895979+

>rna368 ID=rna368|Name=rna368|organism=Nannochloropsis gaditana|type=CDS|length=363bp|location=Sequence derived from alignment at CM002455.1:895404..895979+ (Nannochloropsis gaditana)
ATGGGGCGAAAACGATTCATGACCATGCAGACAAGAAATTCACCGTTGCA
CACACACGGCATCCTGAAATGCAGGAATACACAGCAAATGGACATCGCTT
GGCGGTCCCTGTCAGTGTCTCTTATGTTGCGATgggcaaagaaggaaaaa
cgAAATTCAGGAGATAATATGGATGAAATTGGTTTGGTCTTTTTATATGT
ATCCTCCTTCGTACATTTACGTTTCCCagtcttcttctttttctttgtat
tGTCGTGGCATGGTTGCTTAAAACCTGTTGGCCCGAAAGAAGGAAACAAA
AAGTCAAAGAGAGCTATTCATGTCGTTGTTGCCAGGTGTAGCCATATTGC
CAGGTTGTCTTAA

Synonyms

Publications