rna3663, rna3663 (mRNA) Nannochloropsis gaditana

Overview
Namerna3663
Unique Namerna3663
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length219
Alignment locationCM002461.1:913967..914514 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100444g6.1595.mrna
Orig protein idgnl|cribi|Naga_100444g6.1595
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:913967..914514 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100444g6gene3528Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3663rna3663-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27015.1cds3654Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3663 ID=rna3663|Name=rna3663|organism=Nannochloropsis gaditana|type=mRNA|length=219bp
ATGGCAAGTGACCAGACGCATAACCATTGGCTTTGCTTGAAAGGGAGGAA
AACTGGTTACGTTGTAGGTGGACTAGGAACTCGGAAACTGTGCTTTACGG
CTATGACTGGTACTGATGTGTTGATATTTCAGGCGAGAGGGAAGAGCAAC
CCGAGTGCAGCGACAGCGCCTCACATCAATAATTTTGTGCATCCTACCCA
CTATTTCGTGTATGTCTGA
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protein sequence of rna3663

>rna3663-protein ID=rna3663-protein|Name=rna3663|organism=Nannochloropsis gaditana|type=polypeptide|length=123bp
MLYSCSGRLMSSVLYWMEESNVCTGYASVKYGSKELYVKKRAIIRRSNVS
CTLSCCHDLHIEQEMLDRQATVEEASRKTSIFARRALTKLRYHKDGVYAC
EPQEKPTKKRRNRNKKAVMHSAC
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mRNA from alignment at CM002461.1:913967..914514+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3663 ID=rna3663|Name=rna3663|organism=Nannochloropsis gaditana|type=mRNA|length=548bp|location=Sequence derived from alignment at CM002461.1:913967..914514+ (Nannochloropsis gaditana)
ATGCTTTATTCTTGCTCCGGCAGACTTATGTCGTCAGTGTTGTATTGTTG
AGAAGTGAGGCTAGGGGAACATGCGCATGATACAGGGGGTGGATGAAATG
CGTACGGTGAGGGatcgggagggatggaagaatCGAATGTATGCACAGGC
TATGCGTCAGTAAAATATGGATCGAAAGAGCTTTACGTTAAGAAAAGAGC
AATTATACGTCGCTCTAATGTCTCGTGTACCTTGAGTTGTTGTCATGATC
TGTAGAGGAGAAGGATATGAACAGATGCGGGAAGAACCGCTGTGACATAC
GACGATGTGTTGTAGAAGGGGTGCGTACAGTCCTTATGCGTTGATAGGAA
AGACATATCGAGCAGGAAATGTTGGATAGGCAAGCGACGGTTGAGGAAGC
AAGCCGCAAAACTAGTATTTTTGCTAGAAGAGCCTTGACGAAGCTGCGTT
ATCACAAGGACGGTGTGTACGCATGTGAGCCACAGGAGAAGCCaacgaag
aaaagaagaaatcgAAACAAAAAGGCGGTGATGCACTCAGCGTGTTAA
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Coding sequence (CDS) from alignment at CM002461.1:913967..914514+

>rna3663 ID=rna3663|Name=rna3663|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002461.1:913967..914514+ (Nannochloropsis gaditana)
ATGCTTTATTCTTGCTCCGGCAGACTTATGTCGTCAGTGTTGTATTggat
ggaagaatCGAATGTATGCACAGGCTATGCGTCAGTAAAATATGGATCGA
AAGAGCTTTACGTTAAGAAAAGAGCAATTATACGTCGCTCTAATGTCTCG
TGTACCTTGAGTTGTTGTCATGATCTACATATCGAGCAGGAAATGTTGGA
TAGGCAAGCGACGGTTGAGGAAGCAAGCCGCAAAACTAGTATTTTTGCTA
GAAGAGCCTTGACGAAGCTGCGTTATCACAAGGACGGTGTGTACGCATGT
GAGCCACAGGAGAAGCCaacgaagaaaagaagaaatcgAAACAAAAAGGC
GGTGATGCACTCAGCGTGTTAAATGCTTTATTCTTGCTCCGGCAGACTTA
TGTCGTCAGTGTTGTATTggatggaagaatCGAATGTATGCACAGGCTAT
GCGTCAGTAAAATATGGATCGAAAGAGCTTTACGTTAAGAAAAGAGCAAT
TATACGTCGCTCTAATGTCTCGTGTACCTTGAGTTGTTGTCATGATCTAC
ATATCGAGCAGGAAATGTTGGATAGGCAAGCGACGGTTGAGGAAGCAAGC
CGCAAAACTAGTATTTTTGCTAGAAGAGCCTTGACGAAGCTGCGTTATCA
CAAGGACGGTGTGTACGCATGTGAGCCACAGGAGAAGCCaacgaagaaaa
gaagaaatcgAAACAAAAAGGCGGTGATGCACTCAGCGTGTTAAATGCTT
TATTCTTGCTCCGGCAGACTTATGTCGTCAGTGTTGTATTggatggaaga
atCGAATGTATGCACAGGCTATGCGTCAGTAAAATATGGATCGAAAGAGC
TTTACGTTAAGAAAAGAGCAATTATACGTCGCTCTAATGTCTCGTGTACC
TTGAGTTGTTGTCATGATCTACATATCGAGCAGGAAATGTTGGATAGGCA
AGCGACGGTTGAGGAAGCAAGCCGCAAAACTAGTATTTTTGCTAGAAGAG
CCTTGACGAAGCTGCGTTATCACAAGGACGGTGTGTACGCATGTGAGCCA
CAGGAGAAGCCaacgaagaaaagaagaaatcgAAACAAAAAGGCGGTGAT
GCACTCAGCGTGTTAA
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Synonyms
Publications