rna3662, rna3662 (mRNA) Nannochloropsis gaditana

Overview
Namerna3662
Unique Namerna3662
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4259
Alignment locationCM002461.1:913104..913322 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100309g1.7060.mrna
Orig protein idgnl|cribi|Naga_100309g1.7060
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:913104..913322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100309g1gene3527Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3662rna3662-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27026.1cds3653Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3662 ID=rna3662|Name=rna3662|organism=Nannochloropsis gaditana|type=mRNA|length=4259bp
TCGCTTAATCCCTCTGTGAAATACGAAGCCAGACGAGATGAAGTCGCACG
AGCCCGCAGGGCCGGGGTGCGGCGCGTGCTCTCCTCCATTTTTTGACGGA
GACTTTTTCGGATTACGCTTTCGGACTCCCAGACTCGAAGTTTGGAATTT
AAGACTTTGCCAAGCCGCATAGCCAAGCAGCAGCCTCCCCACCCTCCCCA
AAGCAACGGTGGGCAACGACGGGTACAGGGCGTCGGGACGCTGTGTTAAG
CGCGCAACCAGCCGTAGGAAATGTCCATAATTGTGATTTGAGCATACTCT
GGGAAGTGAATTTCACTTATGGTGGTTTTGGGTTTGTAAAAGTTTGCGTG
GGGTCGCCTTCTCCTTGGAGCCTCGTTGCGTGCTTAGAAAGACATCAAAA
GCATCATCCCTACTCCGCCGATTACGCATTCAACATTCCTTCCTGTAGCT
TACAGACATGGCTGTATAGCTGCGAACTATGTCAGCTAACAACAACGCCA
AGCCGGCCGTTAAAAAGACCCGGTTCCACAAGGAAAAAGAGGAACGGGAG
GCTAGGAAGCGTCAGGAGGATGCCGAGGCTGCTAAAATCTACGAGCAATT
CGTCGCCTCATTTGACGCCGGGGACGGCAACGGCAACGATGGGAAGCGAT
TCGTGCGAGCCAGGGATGGTAGTCGGAGAGGCAGCAGTGGCAAGGGCCGG
GCAGGCCTTGCAGATGACGGCCCTTCCCACTACCAGCCGCAAATGCCCGT
CTCTCTGGCCTCGAAAGCGCCCTTGGCGCCCCTCCCTACGGCTGCCTTTC
CTTCCCACACAAGCGCCACAGCGGCGGACTCCACGAGGACCACATCCGCC
AGTGGCTCCACCTTGGGGAACAGAAGCCATGGCGGAGGAAGTAGCGGTCC
CGCCCTCGTGCCTGGGCTGGCGTCGGCCAACTCGAAGAAAGGGCCGCGGC
AAATCGACGCCTTTTTGGAAGAACTCAAGCAATCGCAGGAATCTGGGGTG
AGCAAGGAGGAGACCTGTCCACGGGAGGGTTCCTTGGATGACGGGGACCC
GCACACGACGAATTTGCACGTGGGGAATTTGTCTCCCTTGACCACAGAGG
AGCGCTTGGAGGCGGTCTTTGGTCGCTTCGGACGCGTGTACTCGGTCAAA
ATCATGTGGCCACGCTCGGAGGAAGAGCGGGCACGTGGGAGGAACACGGG
CTTTGTCTCCTTCTACACGCGCGCGGACGCGGAAGACGCCAAGGACCAGC
TCCAGGATTTCCTCTTGGACGACCATCGGATCGGGATTGGCTGGAGTAAA
GCCGTGAAAAAACTCGCGAACCTCTCCCCATCGACGCTTGTGAGCCCATC
TGCCCTCCCGCCTGGTCTCAGCCTCCCTCCAAGCGCCCTGCACGCTGCCT
CCGGCCCCGAGGAGGAGGGGAGGAGCCTGAAGGGAAGCGGACGGAGAGGA
GGGGACGGGGGGTTGCCCGGAGCGGGCTTGACGACGGCTTTGCAAGCAGG
GTCGGGTCCAGCCGGAGCGGAGGGGGAAGCGACAGGACGGCTTGTGGCTG
CGGATTCGGCAGCTGCGGGCCTAGGACAAGGCTCTTCAGTTCGGCCACCA
ACCTCGACTTCCTCGTCCGCGTCCTCCCCCCCTTCCTCCCTCTCGTCCAA
CCCCTTGGAAGAGGCCTTGCGTCGGGCGACCAGTATCAGCAGCCGCGTAG
TGCAGGAGCCATCTCGCCTGGATGACGGGGAGGATGAGGGTAGAGGGAGG
CGTGGTGGGAGGTACGGCCGCTCCCGATCCCGATCGCCCGAAGGGGAGCC
AGGTCGGAGGAAGGAAGGGGAAGAGGAGGAGAAGGAACCGGGGCCAGGGG
ATGTCGTCCTCCCGGTGCTTTTTCCGGAGGATAAAGACGTGGAGTTTTTG
ATCTCGCGGACCGCCCGGTATGTTGCCAAGGACGGCGGGCCCCTGGAGGA
ACGACTGAAGGTGACCGAAAGCCAAAACCCACGCTTCCGCTTCTTGTGGG
AAGGGGACTCGCCGGAGGCTCTCTTTTACCGGTGGCGCGTCTTCAGCTTT
TTGATGGGCGACACGGAGACGAGGTGGCGGGTGCGGCCCTTTCAAATGAC
CGTCGACGGTCCATTCTGGGCACCTCCCGCCATCCCGGGGGCTTGGCGCG
ACCGGCGGGAGGTGAAAGAAGAGGCCAAGGAGGAGAAAACGAGCGACTAC
GGGGAGCGAGGGCGGGAAAAAGGCCGGGATAGAGGTCGGAGTCGAAGCCC
AGAGAGGAAAAAGGAGGCGGGGAAGAGGGGCCGAAGCCGGAGTCGAGGGA
GGGATCGACGGCAGAGTCGGTCGAGAGAGAGGGAGAGGGGTGGACGCCAT
GAGAGCAGGAGTAGAAGCAGGGAGAGGAGCAGGAGCCGAGAAAGGGGTCG
ACGTCGCCGTAGTCGAAGCCACAGCGCCAGCCGAAGCCGAAGCCGTAGCC
CGGGCGGGAGTCGGAGAGGGGGAGGTCGGGGGCGGGTAGGGGCCCCTGGG
GATGAGGGGCAAGAAGCTGTCATGCCCGCGGCTGCTTTCTTGACGGGCAG
ACAGGCCGAACGGGCACGGGACATTGCGCGGGGGCGGGCGCCTTCTTCTC
GCCTCTCCCGGAAAGACTACGAGACCTTTGTTGCCTTGCTGCGAGCATTG
GACGGAGGGCGGGCGAAAATCAAGGAGGGGATGGGATTCGCCCTGGACCA
TGCCGATGCGAGCGAGGAGGTGGTGGGCTTGCTCAAGGAGAGTCTGTGTG
CGGAGAAGGGATGGTCAGAGGACCTGGCGGGGGAACAGCCTGTGTCCCTC
TCCCGGAGGGTGGCCCGTCTTTATCTGGTGTCAGACATATTGCACAATTC
CTCGGCCGGTGTCAGGAACGCCTCTACCTATCGAACATCGTTGCAACTCG
CACTGCCCTACGTGTTCTCTGCCTTCCACAACTCCTTGGCCGTGTTGGGG
AGGCTCACTGCCCAGCACGTCGAGGAGAAGCTCCTGAAGGTCTTGAAAGT
GTGGGGGGAGTGGTCCATCTACCCTCCTTTGTTCATTGCTGGCTTGGAGG
CTACCTTGACGGTTGACCTGGAGAAAGAGGGGGAGGAAAAGGAAGGGGAA
GAGGAAGGGAAGGAGGAAGATCTTGAGAAGGGGCGAGATGCCCTTGTTCG
GCAGGCGCGGCAGGCGGGCTTGACGACGGAGGGTCCGCTCGTGCTCCTCT
TGCGAAAGATGAAACGCTTGGACGAATTTGTGAAGAAAAAGGCGGCGGGG
GAAAATCGGTTGGAAGGAGGAAGGTGGACGGGAGGTGACACCCGGGGAGG
GAGGGGGGCACGGGGAGGGGAGTGGGAGGCGGGCGGGTCGAGCGCGTCCG
AAATGTCGCGGTATGGGCCAGGGGCGTCGGCGGCTCCTCTGCGGCAGGTG
GAGGAGGAGGAGGACGAGGAGGAAGTGGATGGGACGCCCATGGACGAAGC
GGCCACGAGCATCTTTAGCAGCAAGTACGGCTGGGCTCGGGGCGATGACG
ATCAGGACAGCGAAGGGGAGGATGTGGACGGACGCCCCCTCGACCTCTCC
CCCCTTCCCTCTGGAGCAAGAGCCCCTGGACAAAGCACGCGGCCTGGTGA
CCGAAGCGGGAGGGCAAAAGGGGCGGATAAAGCCAAGAAGCGAGGGCGGA
CGGGCGAGGCCACTTACTCCTCCTCCTCCTCCGACGATGACGAGGACGGG
GGCCGGACCATCTCGATCGGCCAAGCGCTGGGAACGGGGCCCCTCGGGCA
GGAGGAACTAGACCGTCGACCGCATTCCCACGGAAAATATCAGCAGAAGC
CCCCGCCGCAGTGGACCGCTCAGGAAGAGGAAGCGAGGCGGGCCATGCTG
CGGTCCTTGGAGACCGGCTTGCTTCATTTCCGGGACGATTTAGAGGCGAA
GGGGGAAAATGTGGAGAGCATCGAGGCGGCTGTTCAGGAGCGGAGGCAAG
CAATGGTTTCGACCTGGGAGACCCAGACACTGGCACAGAGGAAGGGGTTG
GGCGTGGCGACGGCCGTGGCCGTGGAACGAAGTGCTGTGATCACGTCGAG
GGGGAAGGGAAAGGTGGATGCTTTGGGTGCCGGGCGGGGCAGCGGGGAGG
AGAGGCAGGCGAAGCGGAAAAGGTGAGGTGTTGTAAGCGGGGAATGGATG
GGCTTATGGAGTGAAGGAGCTGCAGTGCTACTGGCAGTGAAATATCATCG
GGGATGATCATACCTCAAAAGTCATGAAAGCTAATAGCGACATACACATT
GAAGGCCCC
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protein sequence of rna3662

>rna3662-protein ID=rna3662-protein|Name=rna3662|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MASDQTHNHWLCLKGRKTGYVVGGLGTRKLCFTAMTGTDVLIFQARGKSN
PSAATAPHINNFVHPTHYFVYV
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mRNA from alignment at CM002461.1:913104..913322+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3662 ID=rna3662|Name=rna3662|organism=Nannochloropsis gaditana|type=mRNA|length=219bp|location=Sequence derived from alignment at CM002461.1:913104..913322+ (Nannochloropsis gaditana)
ATGGCAAGTGACCAGACGCATAACCATTGGCTTTgcttgaaagggaggaa
aactGGTTACGTTGTAGGTGGACTAGGAACTCGGAAACTGTGCTTTACGG
CTATGACTGGTACTGATGTGTTGATATTTcaggcgagagggaagagcaaC
CCGAGTGCAGCGACAGCGCCTCACATCAATAATTTTGTGCATCCTACCCA
CTATTTCGTGTATGTCTGA
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Coding sequence (CDS) from alignment at CM002461.1:913104..913322+

>rna3662 ID=rna3662|Name=rna3662|organism=Nannochloropsis gaditana|type=CDS|length=219bp|location=Sequence derived from alignment at CM002461.1:913104..913322+ (Nannochloropsis gaditana)
ATGGCAAGTGACCAGACGCATAACCATTGGCTTTgcttgaaagggaggaa
aactGGTTACGTTGTAGGTGGACTAGGAACTCGGAAACTGTGCTTTACGG
CTATGACTGGTACTGATGTGTTGATATTTcaggcgagagggaagagcaaC
CCGAGTGCAGCGACAGCGCCTCACATCAATAATTTTGTGCATCCTACCCA
CTATTTCGTGTATGTCTGA
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Synonyms
Publications