rna3655, rna3655 (mRNA) Nannochloropsis gaditana

Overview
Namerna3655
Unique Namerna3655
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length892
Alignment locationCM002461.1:896694..898306 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100309g8.7061.mrna
Orig protein idgnl|cribi|Naga_100309g8.7061
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:896694..898306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100309g8gene3521Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3655rna3655-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27027.1cds3646Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3655 ID=rna3655|Name=rna3655|organism=Nannochloropsis gaditana|type=mRNA|length=892bp
AGCACGGGCATGGAGCATGAAGCAGAGCGCGTTCAGGCATCGACAGCGGC
CATGCGTCTGCTTGATACGGCACAAGACCCCGCGGCGTCTGTCACCAACA
CGGGCATGGAGCATGAAGCAGAGCGCGTTCAGGCATCGACAGCTGCGAAT
ACGTTTTCACTCTTGAATTCTACTGATGTATCCGTAGCCCACCCCCTTCC
GGTTCAGATGCTGCCAGCTCCCCATCCCCTTCATCTTCCTCTTACTCTTC
TCCCTCATTCCACGGAATTCCACCGTCGCCATCAGCTTTAAATCTCTCGT
CTCAGAATCCTTTCACAACTGCCTGCCTTCCTGATGACATGGCAATATCC
CGGATGGAAATCCCTGCAGACGGAGCTAAGCACCTACCAGAAGCTTCTTC
GACCATTGCTTCGCTCTTCCAGACATGTGCAAGCCCATCTATCGCTACCC
CTCCGGTTTCCTTCCCTGCGACTCTCCCCGCATCCTCTTCGTCACTGTCT
CCCGCCCTCGCTTCCTCCAGGACCTGCACCTTTTTCCAAACGGCCTTTTT
GCCTTCCAGCCCAGCGCAAGATGCCGCCAAAAGTCTCGTTTGCACACTTA
GCGATCAAATTTCCGGACCGGTCAACGAGCTTTTTCACACCGCTCATCCG
CACACTCTCCAATACAGCGCAACTGCTGACCCCTCTTCAACTCTTCTTTC
CACCCCTCTGCCGCTCGCTGTTCCGCAGCAGGTACCCGACACGCTGACTA
GCAAAGACCAGTCGCCAGGACGACATCAAACGTCATTTGCCTTAGCTGGA
CATCCTGAAAGTATGGAGCTCTCGACAACCCTCACAAAACTCTTCGATAC
GGCACGACCTGCCACGGTATTGTCCTCGTCAGGTGCAGCGCG
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protein sequence of rna3655

>rna3655-protein ID=rna3655-protein|Name=rna3655|organism=Nannochloropsis gaditana|type=polypeptide|length=279bp
MVLSSPPQDPVVPSSPVRDSLLRRSLSQPAPPPPPSQTSPMLSVLDTPRC
TGGGEAAVTPGKEMETDASSGRRERDKTTGGTPSTGPSNASVRTVTFAAP
TPATPLSPPCPEGQAPKPKHRVGSNFKKFFRLPRLGRSPTTSPLSPPTSS
LTHVPGSPQSQLPQQQQPPQQHITRPSPFPFPFRRSETKMSAAVVTSSAS
KELSSIPPPRRAVPSSLSSSSLSSSSSSSSPSSSSPSSSARAFSSERAID
SPTSWPSPSPELRDRLQLFTRRLSRTTNR
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mRNA from alignment at CM002461.1:896694..898306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3655 ID=rna3655|Name=rna3655|organism=Nannochloropsis gaditana|type=mRNA|length=1613bp|location=Sequence derived from alignment at CM002461.1:896694..898306+ (Nannochloropsis gaditana)
CTACCGTCACAAGGCTCTTCGACACGGTACAAGGTCCTTTGGGGCCAATT
ATGTCAGAGCCtgcggctccctccctcctctcccaagtGCTCGCACGGTC
GGCCTCCTTGCCCAGCCCCGTGACCTCGACAATCGTCTCCGGCGCCTCGG
GGGGCTCCGAGGCCATCGGCGGGAGGAGCCAGAGAGACGGCGGGGCGGGT
TACGTTTACAGGCGGAGTCGTACCGCACTCACCCCGCGTCGACTCactca
agaggaggaaaccgCGCTCTGTGGGGCTCCTCTGGCCTTTCCggacgagg
aaatggagggcgtgTCCCTCTTCGGTAAAGCCTCCGACCCGGCGGagacc
ttcccccccccgcgccccccgCAAAGGCCGTGCATCCCCCTGGGCCTGAG
GACGGTcattccttcgcttccctaCCCGATCTCACCCGGCGCACACACAA
CATGGTCCTgtcgtcccctccccaggaTCCGGTGGTCCCCTCAAGCCCTG
TCCGCGACTCGCTCCTTCGACGGTCGCTCTCCcagcctgcccccccccct
ccgccctcccagaCCTCCCCAATGCTGAGCGTGCTCGACACCCCCCGATG
cacgggcggaggagaagcggctGTCACcccggggaaggagatggagacgg
aCGCAAGCAGTGGACGGCGCGAAAGGGACAAGACTACGGGTGGGACTCCC
AGCACGGGCCCTTCCAACGCGTCGGTCCGCACCGTTACCTTCGCAGCGCC
CACCCCTGCaacccccctttcccccccttgccccgaAGGACAAGCACCAA
AACCCAAGCACCGCGTCGGCAGCAACTTTAAAAAGTTCTTTCGCCTACCC
CGGCTCGGGCGCTCTcccaccacttcccccctctcccctcccacttctTC
GTTGACTCACGTACCGGGCTCGCCGCAGTCGCAGCtgccgcagcaacagc
agcctcCACAGCAGCATATCACTCGCCCTTCTccgtttccttttcctttc
cgaAGGAGCGAAACCAAAATGTCCGCTGCTGTCGttacctcctccgcctc
gaagGAACTCTCGagcattcctcctcctcgtcgtgccgtcccatcctctc
tctcctcctcctccctctcctcctcctcctcctcctcttccccttcttct
tcttccccctcctcgtcagcaCGTGCATTCTCCTCGGAAAGAGCGATAGA
CTCTCCAACTTcctggccctccccctctcctgagTTGAGAGACCGGCTCC
AGCTTTTTACGAGACGCTTATCGCGCACAACGAACCGTTGAAAGAATGCA
ATTTGAACGCTTGAATCTCGGTGTACAGATTTCTGACAATAAACGTGATG
TAAGTGGCTTAACAATTAACATGCAGCGGACATGAGCAtagtaagggagg
gaaggccacAGAGACCCGGGGCGATTTAACACGGACATTGCAAAGGCTAG
CAGATGTATGGCTTAAAGCACGAGTCCGTGACGAATGATTTGAGGGTTGA
AGAGCACTGACAGGGGCAAAAAGAAGCTCACAAAATGGGTCCCTCTTGCA
CTGTTGCGAATTGATACTTTTTTTGGTAGACTCTCCGAGACCGGTGAGGC
AGTGGTGCAATGA
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Coding sequence (CDS) from alignment at CM002461.1:896694..898306+

>rna3655 ID=rna3655|Name=rna3655|organism=Nannochloropsis gaditana|type=CDS|length=840bp|location=Sequence derived from alignment at CM002461.1:896694..898306+ (Nannochloropsis gaditana)
ATGGTCCTgtcgtcccctccccaggaTCCGGTGGTCCCCTCAAGCCCTGT
CCGCGACTCGCTCCTTCGACGGTCGCTCTCCcagcctgcccccccccctc
cgccctcccagaCCTCCCCAATGCTGAGCGTGCTCGACACCCCCCGATGc
acgggcggaggagaagcggctGTCACcccggggaaggagatggagacgga
CGCAAGCAGTGGACGGCGCGAAAGGGACAAGACTACGGGTGGGACTCCCA
GCACGGGCCCTTCCAACGCGTCGGTCCGCACCGTTACCTTCGCAGCGCCC
ACCCCTGCaacccccctttcccccccttgccccgaAGGACAAGCACCAAA
ACCCAAGCACCGCGTCGGCAGCAACTTTAAAAAGTTCTTTCGCCTACCCC
GGCTCGGGCGCTCTcccaccacttcccccctctcccctcccacttctTCG
TTGACTCACGTACCGGGCTCGCCGCAGTCGCAGCtgccgcagcaacagca
gcctcCACAGCAGCATATCACTCGCCCTTCTccgtttccttttcctttcc
gaAGGAGCGAAACCAAAATGTCCGCTGCTGTCGttacctcctccgcctcg
aagGAACTCTCGagcattcctcctcctcgtcgtgccgtcccatcctctct
ctcctcctcctccctctcctcctcctcctcctcctcttccccttcttctt
cttccccctcctcgtcagcaCGTGCATTCTCCTCGGAAAGAGCGATAGAC
TCTCCAACTTcctggccctccccctctcctgagTTGAGAGACCGGCTCCA
GCTTTTTACGAGACGCTTATCGCGCACAACGAACCGTTGA
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Synonyms
Publications