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Properties
| Property Name | Value |
|---|
| Product | class member 1 |
| Orig transcript id | gnl|cribi|Naga_100056g13.10464.mrna |
| Orig protein id | gnl|cribi|Naga_100056g13.10464 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:868883..871827 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3642 ID=rna3642|Name=rna3642|organism=Nannochloropsis gaditana|type=mRNA|length=1784bp
CACGCCACCCGCTTTTCCTCTTCGCCTCCGTCTGCCGCCCGTCTCCTGGT
GCTTCAGAATAGAGGCACAGGCGCGAGGGAGTGGGGAGGTGGTGGTAACA
GAGGTGTGTTCTTGGTTTGCGCGTGCGAATACATTTTTTGGGGGCGGTGT
TGGTTGCCTTGTTTAGAAAAGTCGTGCTATTTGCTTCCCACCTCCCGACG
CGAAACTGATCTTGAGTTCATTTCAAGCTTTGTCCCCTGCCCGGGAATTA
TAAGCATACCGCTCGAAAAGCTACCTCTTTGGTATGCATATTACGTTACT
TAATGTGTGGGAAATAGCATGGCATGCCCCCATGGCCTGAGAATCGTTAA
CTTTTTCACTGGTGCCCCTCAAGAGCCTACACTTTTGTTCCTACGTTTCC
TCGCTCTTCCCTCCCGAAAAACTCGTGCCATGTCCTCCGCTTCATTCACA
AATGCTCCTTGCCCTTCTCCTTCCCTTCAGAGTTCACCTAAGAAGATGAC
CATGTTCCGCAAGCTGGCCCTGGCCCTTCTCTGCTCCTCCGCGGTCGCCT
TCCATGCACCCGCACCCGTAAGCCGCAGCTCAGTACGCCTCCAGGCCGAG
AACAAACCCGCCGCACCGCCCGCTGCAGCCCCTGCTGCCGCTGCTCCTGC
GGCGGCGGCTGCTGCTCCCCCCCCCCCCGCGAAGCCCCAACCCGTGTTCT
CGAAGTCGGTGCCGTTCCTCTTGAAGCCCAAGAACTTGGATGGGATGGTG
GGCGATGTGGGCTTCGACCCTCTGGGCCTGGCTGAGTACGTGGACATCCG
ATGGCTGCGAGAGGCGGAGCTGAAGAACGGCCGCGTCGCAATGCTTGCCT
TCTTGGGCTTCGTGGTCCAGGAATTTATCCGCCTCCCAGGAGACCTGTAC
TCGGAGCCCAACGGGGTCAAAGCCTTCTTCCAAGTCGGACCCCAGCCCCT
CATTCAGATCTTCCTCTTCTGTGGGTTTTTGGAATTCACCCTCCACAAGG
GGAAGATGACGCAAATGGACATGTTTGCGGACGGAAAGCGCGAGCCCGGG
AACTTTGGCTTTGATCCCTTGGGTTTCGGCAAGGATCCCTCCAAACGCGA
GCGACTGGCACTGGCAGAGCTCAAGAACGGACGTCTGGCCATGATCGCGA
TCGGTGGTCTTATCCACCATGCCCTCGTGACGGGCCATGCCACGTTTAGC
AGCTAAAATCAGACACTTCATTTTCCAGTAGCCAGAGGAGGGGAGGGGGA
GGTGGAGAGGGGGGCGTGAATGACCGGGAGGGAGAGGGAGGCGTCGGCAT
GCATGGTTCAGAGTGGAATGGGCATGTTACAATGACTGTGAGCGTTGCGA
AGATCGAGGACGACACGACGCGATCGCCGTGGATGATAACCATGGCGACG
TGCCTCCCACCTCTTCCATCGGAGGATCCGGCCTCTTTCTCCCGGTCTAT
CTCCTCTTCAAATGGCCCTGACCGAGAGACATGGAGACATGTAGGAGAAG
TGGAGAGGAAGATACGACGTGAATGATTGATGTGTTCGAGTCTGCATGCG
TGTGGTGGGAGGCATCACAAGGATGGGGTTGGAAAAATGGTGAAGTTTTT
TTGGGGGGTACGTGAGATAACGGAAAGAGAACAACAACCACTAACCGTGA
TTCGACCGCAATTTCTAGCCATTGGTTTTTTGGTTTTTGAATGGTTTTTT
GCACATAGGCTTGAAGCGCGCCTGTACGTGTGCGATGGCACCAGAAAAGT
GCGGGAGGTCAAGAAGTGGCACTCTTCACACATC back to topprotein sequence of rna3642 >rna3642-protein ID=rna3642-protein|Name=rna3642|organism=Nannochloropsis gaditana|type=polypeptide|length=893bp
MDRRSPDPEAGMYCPRRRADSKEQHADLSKYKRWNFKTFLFLRGRLVLMA
VGLFAFTTGGSLVVSMLTSGSDEGSRGHMLSSTTTSHAKVRFDGDLAVPE
AGVGLQKDDMSTPRPASVEDEGSRRDHVDHDLEQMEEKEGRVREQRDGAK
KAVGLGDDGHDGAGSEEEEEDEGGEEEWEEGAEDRWEEEDEDGWGEEEEE
AEADGKEEGEEVEEDSEGQSDVEKEEDKPRLGVLNDRLHPFRRPQAPLDF
KSREAVEMMVRERQEGGGARVHEKGGVRLAARAQAAADRIREKREEMDAP
VEHPGPRDPSLPTHASLSLAEAQEKLQALGRSVEEQAALNVARRGAVKAA
ILHAWEGYKEFAWGMDELAPVAKKGLKWFGLGLTLVDSLDLLWLVGEKDE
FWGARDWVAADLDVSPQVHVNVFEVTIRVLGGLLSAFHFSQDPVFLEKAQ
ILGRNLRSAMESPSGVPWSDAVLGEARAFAPPTAPDSSVSEATSIQLEFK
YLAHVSKDESLYRLAEHSMRAVDRARAKLPSHGHRRALPPMFINARTGDF
NRGSTITLGARGDSYYEYLLKQWLLTGKREAFYRDRYLEAVAGIKAELFR
HSEPEGRAFIAELASGSNFSPKMDHLVCYLPGTLALGVHHGIDPTGEGGH
MEMARELMVTCFEFYNQTATGLSPEIAHFRVNPSASSSSGSDLYVKPRDT
HNMLRPETVESLFYLYRVTGDAVYQEWAWQIFQAFEAHAKIPTGGYSGLE
NVGDPSSPRIDKMESFFLGETLKYLFLLFEDPSLFSLDEYVLNTEAHPFP
IMSPEEDWLVYKGKGGEKDQEGSAQERHADVSGVHRGHEEQEDGGEEEKE
GEEDAKRGEEDEEEEEEGEEEEEEEEEKEEELGEQKGAVTAES back to topmRNA from alignment at CM002461.1:868883..871827+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3642 ID=rna3642|Name=rna3642|organism=Nannochloropsis gaditana|type=mRNA|length=2945bp|location=Sequence derived from alignment at CM002461.1:868883..871827+ (Nannochloropsis gaditana)
GATTCCCTGTGCACCACTTCACTGACAGAATCATCGCAGCTAGGGCTTGG
GAGGGCGTGTGGGCATAATGGACCGCCGCTCTCCGGACCCGGAAGCTGGA
ATGTACTGCCCCCGCCGACGTGCTGACAGCAAGGAGCAGCATGCAGACTT
GTCGAAATACAAACGATGGAATTTTAAAACCTTTCTGTTTCTACGAGGTC
GCCTAGTCTTGATGGCCGTGGGCTTGTTCGCTTTCACCACCGGGGGTTCT
TTGGTGGTGAGTATGCTCACCTCCGGCTCGGATGAGGGCAGCAGGGGCCA
CATGCTGAGCAGCACGACCACCTCACACGCCAAGGTACGTTTCGACGGTG
ATCTTGCAGTACCCGAGGCGGGAGTAGGACTGCAGAAGGACGACATGAGC
ACGCCGCGTCCAGCCTcggtggaagacgagggTTCTCGGCGCGATCATGT
GGATCACGACCTGgagcagatggaggagaaggagggacgtgTCAGGGAGC
AGAGAGACGGCGCAAAGAAAGCCGTCGGCTTGGGTGATGACGGACAtgat
ggggcgggaagcgaagaggaggaagaggatgaaggtggggaggaggagtg
ggaggaaggagcggaggataggtgggaggaagaggatgaggatgggtggg
gggaagaggaagaagaggcagaagcagatgggaaggaggaaggtgaagaa
GTAGAGGAAGATAGTGAAGGCCAAAGTGACgttgaaaaagaggaagataa
GCCCAGGCTGGGGGTGCTGAACGACAGGCTCCACCCGTTCCGGAGGCCCC
AGGCCCCGTTGGACTTCAAGAGccgagaggcggtggagatgATGGTCCGC
GaaagacaagaaggaggaggcgctcggGTGCACGAGAAAGGCGGGGTGAG
GCTGGCGGCCCGCGCTCAAGCGGCAGCAGACCGTATTCGtgagaagcggg
aggaaatggatgcCCCAGTGGAGCATCCAGGTCCCCgcgacccctccctg
cccacccacgcctctctctccctcgcagAGGCCCAGGAGAAGCTCCAGGC
TTTGGGTCGGTCCGTCGAGGAACAAGCGGCGTTGAATGTGGCCCGACGGG
GCGCGGTGAAAGCTGCGATTTTGCACGCGTGGGAGGGCTACAAGGAATTT
GCCTGGGGCATGGACGAGCTGGCCCCCGTGGCAAAAAAGGGGCTGAAATG
GTTCGGCTTGGGCCTGACTCTGGTGGACTCGCTGGATTTGCTCTGGttgg
tgggggagaaggacgagttCTGGGGCGCCCGAGATTGGGTGGCGGCCGAC
CTGGACGTGAGCCCGCAGGTGCACGTGAACGTCTTCGAGGTGACCATCCG
GGTGCTCGgtggcctcctctccgccttccacTTCTCCCAGGACCCCGTCT
TCCTAGAAAAGGCGCAAATTCTCGGCCGCAACCTCCGGTCGGCCATGGAG
AGCCCGTCGGGGGTGCCCTGGTCCGACGCCGTCCTGGGCGAAGCCCGGGC
CTTCGcgccccccacggccccggaCAGCTCGGTCTCGGAGGCCACGTCCA
TCCAGCTCGAGTTCAAGTACCTGGCCCATGTTAGCAAGGACGAGTCCCTT
TACCGGTTGGCGGAGCACTCCATGCGGGCCGTGGACAGAGCCCGGGCCAA
GCTTCCTTCCCACGGGCACCGACGGGCCTTGCCACCCATGTTTATCAACG
CCAGGACGGGAGACTTCAACAGGGGGTCTACCATCACCCTGGGCGCGCGC
GGAGACAGTTACTACGAGTATTTGCTCAAACAGTGGCTGCTCacggggaa
gcgggaggctTTCTACCGAGACAGGTacctggaggcggtggccggGATCA
AGGCGGAGCTGTTCCGCCACTCGGAGCCGGAGGGTCGGGCCTTCATTGCC
GAGTTGGCCTCTGGCTCTAATTTCTCGCCCAAGATGGACCATTTGGTCTG
CTACCTACCGGGCACCCTGGCCCTTGGCGTGCATCATGGCATTGACCCGa
caggcgagggcgggcacaTGGAGATGGCCCGGGAATTGATGGTCACCTGC
TTCGAATTTTACAACCAAACGGCCACGGGATTATCTCCGGAAATAGCTCA
TTTCCGTGTCaatccttccgcctcctcctcgtcgggtTCAGACTTGTACG
TGAAGCCCCGCGACACGCACAACATGTTGCGGCCCGAGACGGTGGAGTCT
CTCTTCTACCTGTACCGGGTGACCGGCGACGCCGTCTATCAGGAGTGGGC
GTGGCAGATCTTCCAGGCCTTTGAGGCCCATGCCAAGATCCCGACGGGCG
GGTATTCAGGACTGGAGAATGTGGGGGACCCGAGTTCCCCCCGAATCGAC
AAGATGGAGAGCTTCTTCTTGGGGGAGACCTTAAAgtatctcttcctcct
gttcGAAGACCCGAGCTTGTTTTCTTTGGATGAATATGTTTTGAACACGG
AAGCGCACCCTTTTCCCATCATGTCACCGGAGGAGGATTGGCTAGTGtac
aaaggaaaagggggggagaaggaccaGGAAGGGTCAGCTCAGGAAAGACA
TGCTGACGTGAGCGGGGTCCACAGAGGACACGAAGagcaagaagatggag
gcgaagaagagaaggagggggaggaggatgcaaagagaggcgaggaagat
gaggaggaagaggaggagggagaggaggaggaagaggaggaggaggagaa
ggaggaggaattagGAGAACAGAAGGGCGCAGTCACAGCGGAGAGCTAGG
CGACGATTCGCCCGGTGAATTAACGACAGGATGTCAGCTCAAATGGAACA
AAAGTTGCCGCACGATGCTAATGTACACTGAATGTAGACTTAGAAATGTC
CCACACAAAGTACAAAGCTAATTCCTGCAACGCACGCAAATGAACTGATG
AGTGTAACAAAGTTCCCAAAAACCAATAGCTAAACATCATCCTTT back to topCoding sequence (CDS) from alignment at CM002461.1:868883..871827+ >rna3642 ID=rna3642|Name=rna3642|organism=Nannochloropsis gaditana|type=CDS|length=2682bp|location=Sequence derived from alignment at CM002461.1:868883..871827+ (Nannochloropsis gaditana)
ATGGACCGCCGCTCTCCGGACCCGGAAGCTGGAATGTACTGCCCCCGCCG
ACGTGCTGACAGCAAGGAGCAGCATGCAGACTTGTCGAAATACAAACGAT
GGAATTTTAAAACCTTTCTGTTTCTACGAGGTCGCCTAGTCTTGATGGCC
GTGGGCTTGTTCGCTTTCACCACCGGGGGTTCTTTGGTGGTGAGTATGCT
CACCTCCGGCTCGGATGAGGGCAGCAGGGGCCACATGCTGAGCAGCACGA
CCACCTCACACGCCAAGGTACGTTTCGACGGTGATCTTGCAGTACCCGAG
GCGGGAGTAGGACTGCAGAAGGACGACATGAGCACGCCGCGTCCAGCCTc
ggtggaagacgagggTTCTCGGCGCGATCATGTGGATCACGACCTGgagc
agatggaggagaaggagggacgtgTCAGGGAGCAGAGAGACGGCGCAAAG
AAAGCCGTCGGCTTGGGTGATGACGGACAtgatggggcgggaagcgaaga
ggaggaagaggatgaaggtggggaggaggagtgggaggaaggagcggagg
ataggtgggaggaagaggatgaggatgggtggggggaagaggaagaagag
gcagaagcagatgggaaggaggaaggtgaagaaGTAGAGGAAGATAGTGA
AGGCCAAAGTGACgttgaaaaagaggaagataaGCCCAGGCTGGGGGTGC
TGAACGACAGGCTCCACCCGTTCCGGAGGCCCCAGGCCCCGTTGGACTTC
AAGAGccgagaggcggtggagatgATGGTCCGCGaaagacaagaaggagg
aggcgctcggGTGCACGAGAAAGGCGGGGTGAGGCTGGCGGCCCGCGCTC
AAGCGGCAGCAGACCGTATTCGtgagaagcgggaggaaatggatgcCCCA
GTGGAGCATCCAGGTCCCCgcgacccctccctgcccacccacgcctctct
ctccctcgcagAGGCCCAGGAGAAGCTCCAGGCTTTGGGTCGGTCCGTCG
AGGAACAAGCGGCGTTGAATGTGGCCCGACGGGGCGCGGTGAAAGCTGCG
ATTTTGCACGCGTGGGAGGGCTACAAGGAATTTGCCTGGGGCATGGACGA
GCTGGCCCCCGTGGCAAAAAAGGGGCTGAAATGGTTCGGCTTGGGCCTGA
CTCTGGTGGACTCGCTGGATTTGCTCTGGttggtgggggagaaggacgag
ttCTGGGGCGCCCGAGATTGGGTGGCGGCCGACCTGGACGTGAGCCCGCA
GGTGCACGTGAACGTCTTCGAGGTGACCATCCGGGTGCTCGgtggcctcc
tctccgccttccacTTCTCCCAGGACCCCGTCTTCCTAGAAAAGGCGCAA
ATTCTCGGCCGCAACCTCCGGTCGGCCATGGAGAGCCCGTCGGGGGTGCC
CTGGTCCGACGCCGTCCTGGGCGAAGCCCGGGCCTTCGcgccccccacgg
ccccggaCAGCTCGGTCTCGGAGGCCACGTCCATCCAGCTCGAGTTCAAG
TACCTGGCCCATGTTAGCAAGGACGAGTCCCTTTACCGGTTGGCGGAGCA
CTCCATGCGGGCCGTGGACAGAGCCCGGGCCAAGCTTCCTTCCCACGGGC
ACCGACGGGCCTTGCCACCCATGTTTATCAACGCCAGGACGGGAGACTTC
AACAGGGGGTCTACCATCACCCTGGGCGCGCGCGGAGACAGTTACTACGA
GTATTTGCTCAAACAGTGGCTGCTCacggggaagcgggaggctTTCTACC
GAGACAGGTacctggaggcggtggccggGATCAAGGCGGAGCTGTTCCGC
CACTCGGAGCCGGAGGGTCGGGCCTTCATTGCCGAGTTGGCCTCTGGCTC
TAATTTCTCGCCCAAGATGGACCATTTGGTCTGCTACCTACCGGGCACCC
TGGCCCTTGGCGTGCATCATGGCATTGACCCGacaggcgagggcgggcac
aTGGAGATGGCCCGGGAATTGATGGTCACCTGCTTCGAATTTTACAACCA
AACGGCCACGGGATTATCTCCGGAAATAGCTCATTTCCGTGTCaatcctt
ccgcctcctcctcgtcgggtTCAGACTTGTACGTGAAGCCCCGCGACACG
CACAACATGTTGCGGCCCGAGACGGTGGAGTCTCTCTTCTACCTGTACCG
GGTGACCGGCGACGCCGTCTATCAGGAGTGGGCGTGGCAGATCTTCCAGG
CCTTTGAGGCCCATGCCAAGATCCCGACGGGCGGGTATTCAGGACTGGAG
AATGTGGGGGACCCGAGTTCCCCCCGAATCGACAAGATGGAGAGCTTCTT
CTTGGGGGAGACCTTAAAgtatctcttcctcctgttcGAAGACCCGAGCT
TGTTTTCTTTGGATGAATATGTTTTGAACACGGAAGCGCACCCTTTTCCC
ATCATGTCACCGGAGGAGGATTGGCTAGTGtacaaaggaaaaggggggga
gaaggaccaGGAAGGGTCAGCTCAGGAAAGACATGCTGACGTGAGCGGGG
TCCACAGAGGACACGAAGagcaagaagatggaggcgaagaagagaaggag
ggggaggaggatgcaaagagaggcgaggaagatgaggaggaagaggagga
gggagaggaggaggaagaggaggaggaggagaaggaggaggaattagGAG
AACAGAAGGGCGCAGTCACAGCGGAGAGCTAG back to top
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