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Properties
| Property Name | Value |
|---|
| Product | ribosomal large subunit pseudouridine synthase b |
| Orig transcript id | gnl|cribi|Naga_100056g17.10452.mrna |
| Orig protein id | gnl|cribi|Naga_100056g17.10452 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:863060..864536 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3639 ID=rna3639|Name=rna3639|organism=Nannochloropsis gaditana|type=mRNA|length=1815bp
ATGAGAAGGCACCCATGGAGGGCCCAGGAGTTGTCAGTCCTCCTCCTGGC
GTTTGCCGCCCTGGTTACAGCTCGACAGTTGATGTGCAGAGGGCCCCTCT
CCTCGACGTCCTCTCGACGCACGCACCGAGGCAGGTTGGCCTTTGATTAC
CCTGCCTACGACACCAACCCTGCTCAGTATGCCAGCGGAGGGCCCCCTCC
TCCTCCCCCCCCGCCCGGAGGTCTCTATCATGCGCACCCTCCTCCCGCTC
AGCACCAGCCACACCATCAACGGTCACCGGAAAGGACAGGGACGCCCGCT
TCGGGTCCGGGGCAGTACCCTCCCCCGCCCCCTCCGCCGCCCCACCACCA
CCAGCACCAGCAAGCACAGCAGCCACCCCACCCGCAAGACCAGTGGGGCG
GGCCGGGGGGGTATGGGCAAGGGGGCTCACCGCCTCCTCGACAGGACGGA
CCCGGCGCCGAGGGGCCTGGCCGTTACGATCAAGGGCAGCCAGTGGGAGG
AGAAAACTACGGTGCTTACTACGGCAGCCAGGGTGAGCATGGGTATGGCG
CCTATTACGGCGTCCCGCCCGGGCAAGGAGGACAGGGAGGGGCCCGGACG
GAGGGACCGTCCGTGGGGGAGAAATTGAAAGGCTTGTGGGGTTCATTCAA
AGAGAAGATCGCCAGCGGCGTGGATTCCGTCTCGAAAAGCAGCACGGTGG
AGAACGGGCTCCGGTATCTTGCCCGGGACTACGACCAACCCGGCGGGGGC
AGCGGAGGGTACTACGGAGGCCCCGTCTACGACAGCCAGGGAGGACACCA
GGCTCCGCAGTCCTTGCCCGGGGGGGGCGCGTACGGACCTCCAGCGACGC
ACATGCACCAGTCCCCTCAGGGAGCAGGGTCCTGGTCGAGCCCGGGCAGG
GACGGGTCGGGGCCGGGGGCGCGCTATGGCCCTCCGTCCTCGCGTGGGGT
GCCTCCGCCGCCTCCACCGCCCGCGTATTTCCCTCCTGGAGAAAAACAGC
CCCTTTCGTACCCACCGCCGTCGCGCCAACCTGCATACCCCCCGCGGGAG
GCGGGCTCCCCCCGGACCCCGCACGGCCCCGGGACGCCGGCGGAGGAGGA
CGAACCCTCCCAGCACCGGATCGTCAACGAGATGCAAGACCGGTACCGGG
CGCAGGGCCGCCGGGGGGAGGAAGACGAGGCTACCCGCCACGGATGGCCG
ACACAGCCCGTGCCTGGACCGGGGCCGGGTCCGTCGGGTGGGAGGCTGGG
TCCCGGGGGCCCTTGGGGGCACCCCCCGCCCGCGCAGCAACCGCAGGCAC
CTCAGTACCAGCAGCGAGAAGGCCAGAGGCCAGGGCAGGGTGGGGCTAAA
GCCCCTCCGTACGTCCATGGTGTGGACGACCGACCTCCTTATTTCTCGCA
GCAGCAGCAACAAGCTTTTGCACGCCCCCCTCCCTCGCAGCACGGCGGGT
TCCCACACTCCCAGCAAGACTACGGACCCCCTCCTCCCACGTCGCACGGA
CATGGGCCGCCACCGCCTGCGTCCTCGTATCCCACCCCCGGCCCGGGACA
TGGCGCGGGGACCGACGCCGCGCCTGGCACGCAGCAGCCGCAACAAGCGC
CGCAGGAAGAGGTGCAGAGCCAGAGGCCGTACCCGACATTGGAGGAGGAA
GGGGAGGGCGAGAAGGGGAAGGGCGAGAGCGTGCCACCTGCCTCTTCGGC
GGCTGGTTCCTACCAAGGAAAGGACTCGACGGAGAGGACGAGACCGACGG
GGTCGGCCCGGACGAGTCCCAGTGAGGAGGTGAGGACCGTGTGGGCTCTC
GATGAGGAGTTCTGA back to topprotein sequence of rna3639 >rna3639-protein ID=rna3639-protein|Name=rna3639|organism=Nannochloropsis gaditana|type=polypeptide|length=416bp
MSNLSSTQVSSPWLVMMKTGWRQQHKGKQVVLALLLFKMVIMAANSARSC
MKIGFASTRLPFWRAVCTKVHGTSFLFPSRSRVLRFSSTEDSNQGRPPYA
ASDTGDESTGSESKISIISKASSKKKKKGGKEKAEMFRLDRLLANRGVGT
RTEVTALVRRGKVALDNKKVVKDPSFHIPSDAVLLVDHVPVQPLPLLVVY
HKPFGVHSTMGDPMGRPNLEDVLPPRLAKTFHPVGRLDADTTGLLLFSGD
GQLTQRLLHPSSNVQREYLATVDIDVGVNGNEEEKKRKEADFEAALRAKL
AAGVKTADGIYEAQLLEVMRRKKIEERDDEVNSIEEDKGAEGRKSNAREE
LVLRVGVSEGKHRMVRRLLANAGYPVVALHRVRYGHISLGTLSEGEVTEI
EAQSEGGQWARRLLGS back to topmRNA from alignment at CM002461.1:863060..864536+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3639 ID=rna3639|Name=rna3639|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp|location=Sequence derived from alignment at CM002461.1:863060..864536+ (Nannochloropsis gaditana)
ATGTCAAACCTTTCTTCGACTCAAGTTTCTTCCCCCTGGCTTGTGATGAT
GAAGACGGGCTGGAGGCAGCAGCACAAGGGGAAACAGGTTGTTTTAGCCC
TACTTCTTTTCAAAATGGTGATCATGGCAGCAAATTCGGTGCGTCTACTT
GTTGATACATCACTTTATAACTTTCAACCGTGAGGACGCCTTGGATGCTT
TCGTCCTCACACTGGTCAGACGTACCACCCCATCACAGTTGTGATACGCT
TGACCATCGCTCGATCCCAACCTGCACAGGCACGATCATGTATGAAAATA
GGTTTCGCCTCAACAAGATTACCGTTTTGGCGAGCTGTCTGCACCAAGGT
CCATGGcacttcttttctcttccccagTCGATCACGAGTCTTGCGTTTTT
CCAGCACCGAAGATAGCAATCAAGGTAGACCTCCGTATGCTGCTAGCGAC
ACAGGAGATGAAAGCACTGGATCAGAGAGTAAAATCTCAATCATTTCCAA
AGCTTCttccaaaaagaaaaagaagggagggaaggagaaggcggagatgT
TTCGGCTGGATCGTCTGCTCGCAAaccggggggtggggacaaGAACAGAG
GTGACGGCCCTGGTGCGCCGAGGCAAGGTGGCCTTAGACAACAAGAAAGT
GGTCAAGTAAGTCACGGGGGAAAAAATGACGGGAAATCATGTGTCATCAT
TGACTCCTTCTCTCCATTCACCTctgtttcccttcctgcagagacccctc
cttccacatccCTTCCGATgccgtccttctcgtcgATCACGTACCTGTAC
aaccgcttcccctccttgttgTATATCACAAGCCTTTTGGCGTTCACTCC
ACCATGGGAGATCCTATGGGAAGACCTAATCTGGAAGAtgtgcttcctcc
ccgccttgccaaGACCTTCCACCCTGTAGGGCGCCTGGACGCCGATACCA
CGGGCCTGCTTCTTTTCTCAGGAGACGGTCAATTAACGCAACGTCTTTTA
CATCCGTCCAGCAATGTGCAAAGGGAATATTTGGCGACGGTAGACATTGA
TGTTGGGGTGAACggaaatgaggaagaaaagaagagaaaagaagcagaTT
TTGAAGCAGCGCTGCGAGCTAAGTTAGCTGCAGGTGTCAAGACCGCGGAT
GGAATTTATGAGGCACAACTATTGGAGGTCATGCGTAGGAAAAAAATAGA
AGAGAGAGATGACGAAGTGAATTCCATAGAGGAAGAtaagggggcagagg
ggaggaaatcaaATGCAAGAGAGGAGCTTGTCCTTCGCGTCGGCGTCAGC
GAGGGGAAGCATCGTATGGTTCGACGTCTTTTGGCCAACGCGGGTTATCC
AGTCGTAGCATTGCATCGCGTTAGGTACGGGCACATATCTCTGGGAACGT
tgtcggagggggaggtgacggaAATAGAAGCTCAGAGCGAAGGGGGACAG
TGGGCCCGGAGATTGCTAGGAAGCTGA back to topCoding sequence (CDS) from alignment at CM002461.1:863060..864536+ >rna3639 ID=rna3639|Name=rna3639|organism=Nannochloropsis gaditana|type=CDS|length=3753bp|location=Sequence derived from alignment at CM002461.1:863060..864536+ (Nannochloropsis gaditana)
ATGTCAAACCTTTCTTCGACTCAAGTTTCTTCCCCCTGGCTTGTGATGAT
GAAGACGGGCTGGAGGCAGCAGCACAAGGGGAAACAGGTTGTTTTAGCCC
TACTTCTTTTCAAAATGGTGATCATGGCAGCAAATTCGGCACGATCATGT
ATGAAAATAGGTTTCGCCTCAACAAGATTACCGTTTTGGCGAGCTGTCTG
CACCAAGGTCCATGGcacttcttttctcttccccagTCGATCACGAGTCT
TGCGTTTTTCCAGCACCGAAGATAGCAATCAAGGTAGACCTCCGTATGCT
GCTAGCGACACAGGAGATGAAAGCACTGGATCAGAGAGTAAAATCTCAAT
CATTTCCAAAGCTTCttccaaaaagaaaaagaagggagggaaggagaagg
cggagatgTTTCGGCTGGATCGTCTGCTCGCAAaccggggggtggggaca
aGAACAGAGGTGACGGCCCTGGTGCGCCGAGGCAAGGTGGCCTTAGACAA
CAAGAAAGTGGTCAAagacccctccttccacatccCTTCCGATgccgtcc
ttctcgtcgATCACGTACCTGTACaaccgcttcccctccttgttgTATAT
CACAAGCCTTTTGGCGTTCACTCCACCATGGGAGATCCTATGGGAAGACC
TAATCTGGAAGAtgtgcttcctccccgccttgccaaGACCTTCCACCCTG
TAGGGCGCCTGGACGCCGATACCACGGGCCTGCTTCTTTTCTCAGGAGAC
GGTCAATTAACGCAACGTCTTTTACATCCGTCCAGCAATGTGCAAAGGGA
ATATTTGGCGACGGTAGACATTGATGTTGGGGTGAACggaaatgaggaag
aaaagaagagaaaagaagcagaTTTTGAAGCAGCGCTGCGAGCTAAGTTA
GCTGCAGGTGTCAAGACCGCGGATGGAATTTATGAGGCACAACTATTGGA
GGTCATGCGTAGGAAAAAAATAGAAGAGAGAGATGACGAAGTGAATTCCA
TAGAGGAAGAtaagggggcagaggggaggaaatcaaATGCAAGAGAGGAG
CTTGTCCTTCGCGTCGGCGTCAGCGAGGGGAAGCATCGTATGGTTCGACG
TCTTTTGGCCAACGCGGGTTATCCAGTCGTAGCATTGCATCGCGTTAGGT
ACGGGCACATATCTCTGGGAACGTtgtcggagggggaggtgacggaAATA
GAAGCTCAGAGCGAAGGGGGACAGTGGGCCCGGAGATTGCTAGGAAGCTG
AATGTCAAACCTTTCTTCGACTCAAGTTTCTTCCCCCTGGCTTGTGATGA
TGAAGACGGGCTGGAGGCAGCAGCACAAGGGGAAACAGGTTGTTTTAGCC
CTACTTCTTTTCAAAATGGTGATCATGGCAGCAAATTCGGCACGATCATG
TATGAAAATAGGTTTCGCCTCAACAAGATTACCGTTTTGGCGAGCTGTCT
GCACCAAGGTCCATGGcacttcttttctcttccccagTCGATCACGAGTC
TTGCGTTTTTCCAGCACCGAAGATAGCAATCAAGGTAGACCTCCGTATGC
TGCTAGCGACACAGGAGATGAAAGCACTGGATCAGAGAGTAAAATCTCAA
TCATTTCCAAAGCTTCttccaaaaagaaaaagaagggagggaaggagaag
gcggagatgTTTCGGCTGGATCGTCTGCTCGCAAaccggggggtggggac
aaGAACAGAGGTGACGGCCCTGGTGCGCCGAGGCAAGGTGGCCTTAGACA
ACAAGAAAGTGGTCAAagacccctccttccacatccCTTCCGATgccgtc
cttctcgtcgATCACGTACCTGTACaaccgcttcccctccttgttgTATA
TCACAAGCCTTTTGGCGTTCACTCCACCATGGGAGATCCTATGGGAAGAC
CTAATCTGGAAGAtgtgcttcctccccgccttgccaaGACCTTCCACCCT
GTAGGGCGCCTGGACGCCGATACCACGGGCCTGCTTCTTTTCTCAGGAGA
CGGTCAATTAACGCAACGTCTTTTACATCCGTCCAGCAATGTGCAAAGGG
AATATTTGGCGACGGTAGACATTGATGTTGGGGTGAACggaaatgaggaa
gaaaagaagagaaaagaagcagaTTTTGAAGCAGCGCTGCGAGCTAAGTT
AGCTGCAGGTGTCAAGACCGCGGATGGAATTTATGAGGCACAACTATTGG
AGGTCATGCGTAGGAAAAAAATAGAAGAGAGAGATGACGAAGTGAATTCC
ATAGAGGAAGAtaagggggcagaggggaggaaatcaaATGCAAGAGAGGA
GCTTGTCCTTCGCGTCGGCGTCAGCGAGGGGAAGCATCGTATGGTTCGAC
GTCTTTTGGCCAACGCGGGTTATCCAGTCGTAGCATTGCATCGCGTTAGG
TACGGGCACATATCTCTGGGAACGTtgtcggagggggaggtgacggaAAT
AGAAGCTCAGAGCGAAGGGGGACAGTGGGCCCGGAGATTGCTAGGAAGCT
GAATGTCAAACCTTTCTTCGACTCAAGTTTCTTCCCCCTGGCTTGTGATG
ATGAAGACGGGCTGGAGGCAGCAGCACAAGGGGAAACAGGTTGTTTTAGC
CCTACTTCTTTTCAAAATGGTGATCATGGCAGCAAATTCGGCACGATCAT
GTATGAAAATAGGTTTCGCCTCAACAAGATTACCGTTTTGGCGAGCTGTC
TGCACCAAGGTCCATGGcacttcttttctcttccccagTCGATCACGAGT
CTTGCGTTTTTCCAGCACCGAAGATAGCAATCAAGGTAGACCTCCGTATG
CTGCTAGCGACACAGGAGATGAAAGCACTGGATCAGAGAGTAAAATCTCA
ATCATTTCCAAAGCTTCttccaaaaagaaaaagaagggagggaaggagaa
ggcggagatgTTTCGGCTGGATCGTCTGCTCGCAAaccggggggtgggga
caaGAACAGAGGTGACGGCCCTGGTGCGCCGAGGCAAGGTGGCCTTAGAC
AACAAGAAAGTGGTCAAagacccctccttccacatccCTTCCGATgccgt
ccttctcgtcgATCACGTACCTGTACaaccgcttcccctccttgttgTAT
ATCACAAGCCTTTTGGCGTTCACTCCACCATGGGAGATCCTATGGGAAGA
CCTAATCTGGAAGAtgtgcttcctccccgccttgccaaGACCTTCCACCC
TGTAGGGCGCCTGGACGCCGATACCACGGGCCTGCTTCTTTTCTCAGGAG
ACGGTCAATTAACGCAACGTCTTTTACATCCGTCCAGCAATGTGCAAAGG
GAATATTTGGCGACGGTAGACATTGATGTTGGGGTGAACggaaatgagga
agaaaagaagagaaaagaagcagaTTTTGAAGCAGCGCTGCGAGCTAAGT
TAGCTGCAGGTGTCAAGACCGCGGATGGAATTTATGAGGCACAACTATTG
GAGGTCATGCGTAGGAAAAAAATAGAAGAGAGAGATGACGAAGTGAATTC
CATAGAGGAAGAtaagggggcagaggggaggaaatcaaATGCAAGAGAGG
AGCTTGTCCTTCGCGTCGGCGTCAGCGAGGGGAAGCATCGTATGGTTCGA
CGTCTTTTGGCCAACGCGGGTTATCCAGTCGTAGCATTGCATCGCGTTAG
GTACGGGCACATATCTCTGGGAACGTtgtcggagggggaggtgacggaAA
TAGAAGCTCAGAGCGAAGGGGGACAGTGGGCCCGGAGATTGCTAGGAAGC
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