rna3636, rna3636 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3636
Unique Name	rna3636
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2079
Alignment location	CM002461.1:856381..859048 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100056g21.10474.mrna
Orig protein id	gnl\|cribi\|Naga_100056g21.10474
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:856381..859048 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g21	gene3503	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3636	rna3636-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27061.1	cds3627	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:856381..859048+
coding sequence from alignment at CM002461.1:856381..859048+

mRNA sequence

>rna3636 ID=rna3636|Name=rna3636|organism=Nannochloropsis gaditana|type=mRNA|length=2079bp
AAAGCCACAACGTTCGTCACCCGCAGGCCAGACCCGGTAAGATGCCAAGG
GCTAGGCTCTTGTTTTGCTCACGACACTGCTCCACATTCTATCTCTAGCG
TAGTGATCATGCTGGCACGTAGCACATCCTGGAACTCTACGAAAGATGAT
GCATTTGGACTCGAGTTTGACGGCGATTTATTTGTTGATACCGAGCACTC
CTTAATGGAGCTATCTGCTACAGTCGAACACAACGAGAACACGACCTGTG
GAAAGACAGCTACGGTGCAGGAGACACCCGACGCGGCGCACCATCAAGTA
GAACCCGTCATGACAGCAGGACGTGCAATCTTTGGGGAGCAGGACCCCTC
CTCAGTACCTCTACGGAAAGCTCACTTCGGCACAGCTGGCGTGCAACTGG
TCAATCAAGGTGTTAATCTTCACCAAACCACACCGTCTCCACGGCCTTTT
CACCCATATCTCCAGCACCAGATATTTGACGAGAACGCGCAGCCGATCGA
GCGAGGCGCCAGTACTGTCACTAGGCACAGTCCATCTGCATCTCACCCAG
GCAGTTCTTTAAAAAAGGCGGCAGCACCCCGCGTCAATGTCCGCCTGGTT
CCTCAGAACTCACGAACGGCTGCACGTGTGCGGAACGCTGGCTACAACCC
CAAACTCGAACTCTCCACACCCTTGAGCAAACGGGTGGGATTTTTCCTCG
GACATCTGGCTAAAAAATGGTCCAATGTCTCGGGCATCAACTCTTTGTCC
TTGCGCCTGGTCGTTTCCCCTGCCCGGCAGCTTGAAGAACACGTTTCGCT
AAGGTCCCTCGAGTCCTACTTTACCACGGCCACAAAAATGGCAGCTGGAC
CTTCACCAACGCCCACGGGGGCGGGAGCAGTGACGCCGTCCAGCCCGTCA
GCTATTTTGCAGCTGCATTACTTATTGGTAGAAGACATGGAATGCGATCA
TAACCCGGCCGCCTCCCACACGACGCCGGCCCGGGAAAGTCCTTGGGGAC
CAGAGGAAAATTCTCTATTCGATGCGTTCGCTGCAACGGGCCTCGACCAA
CTACCATGCGCGATCCTCTCCGACCTCCCCCATTCTCTTCCTCCATCGAA
TGTCCCTCCTATCTCGGTGCAGCAAGTTGACGTGCAACCTGTGGAAGAAC
CCAAAAAACGCCGCAAGCGTGCGTCTCTCACGTCGGGAGTTGCTTCCAAC
CGCAATGATACCTTCGTCAATGCGGCCACGGTGGAAATTTGCACACCAGC
GCCGGTCAAGCAAAGAGCCACCTCTTTTTGCTCCTCCGTCTCAACCGCCA
CGTCTTCGTCCTCGTCCCCCTCCATTGATTCCTCCGCCGACCGCTCTCGG
TCTGTGGTAGGGCCGAAGCCAGCATTAGGGCAAGAGAAAAAACGCCGACG
CATCCGGCCAACGTTGCTGTCTGCTGGACAGGCAGTCAGCACCAGCCCCA
GCTTTACCATGGCCCATTGTGGCATCGGCAGCTTTACTTCGGAGTCTTCA
CGGCAATCTTGCTTCTCAAATTCAGGGGACGACTCAGGTCAGTGAGTTAA
TTGAATAGGCAACCTCAGGAATTCAATCCTCCCTTGGTAATCTTCGACCA
TGGGACGATAAAAAGCAGATAAAATTTGTGAAGCCGTCCAGGCAGTCACA
TATCGACCGTGCATAATATTGGAAGGTACATGCGAGGCTCTTGTGTAATT
TACATTTATTACGCCACGCCGGAGAGGAGAAAAGTAGGAAGGGAAGATAA
ATATATACATGATACATGATGGGAGGCTATAAATGGTCTCAGATAATGCA
TGTGGAATGGAAAATTGAACACTGATTGAAAGATACGAAGGTGGCATTCT
CCTCATCCTCCATAGTCGGACCGCTTGCGTTAAAACATTTACCCATTAGT
CTGAGCGGACCAAATGAGCTATAAGATCCCGTCATGACAAAAAATATTAA
AAACATTTTGCTTTTTTCAAGTGATAAGAAAAGCTTATGTTTGAGATGTG
GTCCACTATTTATGCTCTCTTTGATAATAAATCACACGATACTGGACCTG
CCGGATCGCTTTAAAGAAAAAGTCAGCCT

protein sequence of rna3636

>rna3636-protein ID=rna3636-protein|Name=rna3636|organism=Nannochloropsis gaditana|type=polypeptide|length=658bp
MAFDGEVATRRREGKVLPHSSVCTQCHSKLQTSLCWHPIIPVPLCLGCYV
STIHTIRAFYRRHQEEAWSNKRERKDHNAVHNEMKSYDYVDDYSNRHNID
QSADTHGPVDFAPFDSVNRAPITVCIWCLRLAQGADEACHILRCKSRSTL
PSTDLKHPSDVGFCKTCLERYFEKAVVDKWCLESEEGGWTCLICNKVPFL
ELAWEEGWGLPQYPQDLRLSAEIQELLIKIFAEPHPRRTTPAILYPDLER
QETSEGLRPATTAANGSELNSVLSPNSSSSLRLQSCASDQQRGRLSDERR
EVPLAPEQERELVSSPLEFLSSLSGCESNDTLLVLIEHTQQALSLLRRLW
QEAAVQVAAREDMLDMGTELVEQIQYVRKGSQKEGQKECRTLIVEKRTIN
GVKGSMGPAVRELERKEARGNRGCNDKCRHEGSAIYTRGANQAEREAQEA
VRTSLTELRVLLRHMQYLRDQHMPGVCDDATINSGTLELPQKRSCTGLDK
ASGNVEKSCTLYTRVSPTPHPSHSDSSSAVLDYEMERLKNLQGWLVSSQG
LLRSLHTQVLHVLARAHPPPPEATKKIYPPAEEEPQQLSQLGEAKVQVIE
REQKEGDVFQRRLKASEASLRELGKDLSVRLEDVGYAVSILCQMKEGLGE
KGVGADAH

mRNA from alignment at CM002461.1:856381..859048+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3636 ID=rna3636|Name=rna3636|organism=Nannochloropsis gaditana|type=mRNA|length=2668bp|location=Sequence derived from alignment at CM002461.1:856381..859048+ (Nannochloropsis gaditana)
ggtaTCAACTCGCTCTGCCAGCCCTGATGCGGAGAGAGCTGGGCGACGCA
TCTTGTCAATGTACGACGATAGCTCTACGCATTCAGCTGTCGAGTACTTT
TTTTAAATCCCTCATGTGTAATTTGCATCCCACTCAAACATGCTTCTAGA
TGGTCCCGTACCCCTGGTAAGCGAAATGCGATGTATTGTTTAACTGTATA
TGCTATAGAAACCGTAAAATGCAGTGAATATGAGCTATCCTAATGTTTGT
TGGCTATTTTAACAAAATACGCTTGGTTCCGTGAATTGATGCCTGCAAAT
TTTCTGTAAACATGCTTTCCTTGCCTAGGTTGACTAGCAAGCAAGTGCGG
TTTGTAGCCGTGACTGTGAAACTCTCAATTTTCTAAATTTCTTCTAAAAT
TTTCTAAAACATTTGCTCATTGTTACAGCTGGGGCCACGCAACTTTGGAA
GGGGATGGCGTTTGACGGGGAAGTTGCAACgagacggcgggagggcaagg
tACTGCCTCATTCTTCTGTCTGCACTCAATGTCATTCTAAACTCCAAACT
TCTCTCTGCTGGCATCCCATCATACCTGTTCCTCTTTGTCTCGGGTGCTA
TGTCTCAACAATTCACACTATTCGCGCTTTTTACCGCCGTCATCAAGAAG
AAGCTTGGTCGAACAAGCGCGAGAGAAAAGATCACAATGCTGTGCACAAT
GAAATGAAAAGCTATGATTATGTCGATGATTATAGCAATCGACATAACAT
CGATCAGAGTGCGGATACGCATGGTCCAGTTGATTTCGCACCTTTTGATT
CCGTGAACCGAGCTCCAATCACTGTCTGTATCTGGTGTTTGCGCCTTGCT
CAAGGAGCAGACGAAGCGTGCCACATACTTCGCTGCAAATCTCGGTCAAC
TTTACCTTCTACTGATTTAAAGCATCCGTCTGATGTTGGGTTTTGTAAAA
CTTGTCTTGAACGGTACTTTGAGAAAGCCGTCGTCGACAAATGGTGTCta
gaaagcgaggagggcggatggACGTGCCTTATATGTAATAAAGTGCCATT
CCTAGAGCTGGcatgggaagaagggtgggGCCTACCTCAATATCCTCAAG
ATTTGAGATTATCGGCGGAGATACAAGAACTATTGATAAAGATTTTTGCA
GAACCGCACCCGCGACGAACGACACCAGCGATTTTGTACCCGGATTTGGA
GCGGCAAGAAACCTCTGAAGGTCTTCGGCCGGCGACAACGGCCGCAAATG
GCTCTGAGTTGAATTCCGTACTATCGCCTaactcttcctcttcgttgCGT
CTCCAGTCATGTGCGTCTGACCAGCAGAGAGGACGTCTCAGTGATGAGCG
CCGTGAAGTACCTCTCGCACCTGAACAGGAGCGCGAGCTTGTATCGTCTC
CTCTTGAGTTCCTATCTTCTCTCTCTGGATGCGAAAGTAATGATACCCTT
TTGGTGCTGATAGAACACACACAACAGGCTTTATCTCTCCTAAGGCGCCT
TTGGCAGGAAGCAGCAGTACAGGTAGCTGCTCGAGAGGACATGCTCGACA
TGGGCACGGAGTTGGTAGAGCAAATCCAATATGTTCGGAAAGGGTCtcag
aaggagggacagaaagAGTGCCGAACACTAATCGTGGAGAAAAGAACGAT
CAACGGAGTAAAGGGGTCGATGGGGCCTGCGGTGAGGGAGCTGGAACGAA
AAGAGGCCCGCGGCAATCGCGGTTGCAACGATAAGTGTAGGCATGAGGGA
AGCGCTATTTACACCAGGGGGGCAAATCAGGCAGAAAGagaggcccagga
ggccgTGCGGACGTCATTGACCGAGCTCCGGGTCCTGTTGCGACACATGC
AGTATCTAAGGGATCAGCACATGCCGGGTGTGTGCGACGACGCAACGATA
AATAGTGGAACACTGGAACTTCCGCAAAAGAGAAGCTGCACGGGTCTTGA
CAAAGCGAGCGGCAACGTGGAAAAATCATGCACGTTGTACACCAGAGTTT
CCCCGACACCGCACCCCTCCCACTCAGATTCATCTTCTGCCGTTCTTGAT
TACGAAATGGAACGATTGAAGAATTTGCAAGGGTGGCTTGTATCATCCCA
AGGCCTCCTTCGAAGCCTCCACACTCAAGTGTTGCATGTCTTGGCGAGAG
cccatcccccgcctcctgagGCTACGAAAAAGATCTATCCCCCGGCTGAG
GAAGAGCCACAACAGCTTTCACAGCTAGGGGAAGCGAAGGTACAGGTCAT
AGAACGCGAAcagaaagaaggagatgtcTTTCAACGCCGGCTGAAGGCGT
CAGAGGCGTCTTTGAGGGAACTTGGTAAAGATCTAAGCGTCCGCCTTGAA
GACGTTGGATACGCAGTGTCAATTTTGTGCCAAATGAAGGAAGGATTGGG
CGAAAAGGGGGTTGGCGCAGATGCACATTAATGCTTCTTCACGGGGAACC
GCGACAAAGGGCGCCATGGCCATCTACCGTCCGATGGCTGGGATATGCGG
ACAGGAGGGACGAAAACTTGTCGTCAACGGGAGGGTGATATGATCTGTTA
TTATATTATTATCTATGCTACGTGGGAGCAGTGGGCTTGTTCATACGTCC
TAACAGAGATATGCATCAGCCAAAACGAAAATGAAAGCAAAGTATCAACA
ACTCTACAAACAAGCCCG

Coding sequence (CDS) from alignment at CM002461.1:856381..859048+

>rna3636 ID=rna3636|Name=rna3636|organism=Nannochloropsis gaditana|type=CDS|length=1977bp|location=Sequence derived from alignment at CM002461.1:856381..859048+ (Nannochloropsis gaditana)
ATGGCGTTTGACGGGGAAGTTGCAACgagacggcgggagggcaaggtACT
GCCTCATTCTTCTGTCTGCACTCAATGTCATTCTAAACTCCAAACTTCTC
TCTGCTGGCATCCCATCATACCTGTTCCTCTTTGTCTCGGGTGCTATGTC
TCAACAATTCACACTATTCGCGCTTTTTACCGCCGTCATCAAGAAGAAGC
TTGGTCGAACAAGCGCGAGAGAAAAGATCACAATGCTGTGCACAATGAAA
TGAAAAGCTATGATTATGTCGATGATTATAGCAATCGACATAACATCGAT
CAGAGTGCGGATACGCATGGTCCAGTTGATTTCGCACCTTTTGATTCCGT
GAACCGAGCTCCAATCACTGTCTGTATCTGGTGTTTGCGCCTTGCTCAAG
GAGCAGACGAAGCGTGCCACATACTTCGCTGCAAATCTCGGTCAACTTTA
CCTTCTACTGATTTAAAGCATCCGTCTGATGTTGGGTTTTGTAAAACTTG
TCTTGAACGGTACTTTGAGAAAGCCGTCGTCGACAAATGGTGTCtagaaa
gcgaggagggcggatggACGTGCCTTATATGTAATAAAGTGCCATTCCTA
GAGCTGGcatgggaagaagggtgggGCCTACCTCAATATCCTCAAGATTT
GAGATTATCGGCGGAGATACAAGAACTATTGATAAAGATTTTTGCAGAAC
CGCACCCGCGACGAACGACACCAGCGATTTTGTACCCGGATTTGGAGCGG
CAAGAAACCTCTGAAGGTCTTCGGCCGGCGACAACGGCCGCAAATGGCTC
TGAGTTGAATTCCGTACTATCGCCTaactcttcctcttcgttgCGTCTCC
AGTCATGTGCGTCTGACCAGCAGAGAGGACGTCTCAGTGATGAGCGCCGT
GAAGTACCTCTCGCACCTGAACAGGAGCGCGAGCTTGTATCGTCTCCTCT
TGAGTTCCTATCTTCTCTCTCTGGATGCGAAAGTAATGATACCCTTTTGG
TGCTGATAGAACACACACAACAGGCTTTATCTCTCCTAAGGCGCCTTTGG
CAGGAAGCAGCAGTACAGGTAGCTGCTCGAGAGGACATGCTCGACATGGG
CACGGAGTTGGTAGAGCAAATCCAATATGTTCGGAAAGGGTCtcagaagg
agggacagaaagAGTGCCGAACACTAATCGTGGAGAAAAGAACGATCAAC
GGAGTAAAGGGGTCGATGGGGCCTGCGGTGAGGGAGCTGGAACGAAAAGA
GGCCCGCGGCAATCGCGGTTGCAACGATAAGTGTAGGCATGAGGGAAGCG
CTATTTACACCAGGGGGGCAAATCAGGCAGAAAGagaggcccaggaggcc
gTGCGGACGTCATTGACCGAGCTCCGGGTCCTGTTGCGACACATGCAGTA
TCTAAGGGATCAGCACATGCCGGGTGTGTGCGACGACGCAACGATAAATA
GTGGAACACTGGAACTTCCGCAAAAGAGAAGCTGCACGGGTCTTGACAAA
GCGAGCGGCAACGTGGAAAAATCATGCACGTTGTACACCAGAGTTTCCCC
GACACCGCACCCCTCCCACTCAGATTCATCTTCTGCCGTTCTTGATTACG
AAATGGAACGATTGAAGAATTTGCAAGGGTGGCTTGTATCATCCCAAGGC
CTCCTTCGAAGCCTCCACACTCAAGTGTTGCATGTCTTGGCGAGAGccca
tcccccgcctcctgagGCTACGAAAAAGATCTATCCCCCGGCTGAGGAAG
AGCCACAACAGCTTTCACAGCTAGGGGAAGCGAAGGTACAGGTCATAGAA
CGCGAAcagaaagaaggagatgtcTTTCAACGCCGGCTGAAGGCGTCAGA
GGCGTCTTTGAGGGAACTTGGTAAAGATCTAAGCGTCCGCCTTGAAGACG
TTGGATACGCAGTGTCAATTTTGTGCCAAATGAAGGAAGGATTGGGCGAA
AAGGGGGTTGGCGCAGATGCACATTAA

Synonyms

Publications