rna3633, rna3633 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3633
Unique Name	rna3633
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2215
Alignment location	CM002461.1:850775..853118 -

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Properties


Property Name	Value
Product	cysteine subfamily
Orig transcript id	gnl\|cribi\|Naga_100056g24.10480.mrna
Orig protein id	gnl\|cribi\|Naga_100056g24.10480
Gene	NFS
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:850775..853118 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NFS	gene3500	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27067.1	cds3624	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3633	rna3633-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:850775..853118-
coding sequence from alignment at CM002461.1:850775..853118-

mRNA sequence

>rna3633 ID=rna3633|Name=rna3633|organism=Nannochloropsis gaditana|type=mRNA|length=2215bp
CGCGACACGGGCGCTTAAAGATTCAGGGGCCTTGGATACTTTTCCTAACG
CCGACTGCCACTTGCAAAACCCCGCGTTGTATCCAGGCCTGCCGTGTGCA
ACCCCCCCCCCGCCACTCGATTTGTGGATTTTAAGGTCATGGAAAACCTG
CGTGAACGCAAGAAACATTTCAAGCTCATAATGAGACGCTTTACTAATCA
TTGATCTGGCCTTGTCCGGGGAAATTTCATGTCCTTTAGATCTTCTCACT
GCCTCCTTCTTGTTCTCCACACAAGCCCAACGCTAGCAAACAACAGGAAG
ACTTTTCGTCAATTTCAAAATGTCCAACACGCTCTTTAGCATGCACACTC
AGCTGTCGGAGGAGGTATTCGCCCGTTTCATGGCGTTGCCTCAGGGGGAG
GCCTATCAGGCTGAATACATTTGGATTGGTGGTACAGGCCAGGATTTGCG
TTGCAAAACTCGCACGCTCTACAAGAAAACAAACAATCCCGATGACCTTC
CCGTCTGGAACTTCGACGGATCCTCCACTGGCCAGGCCCCTGGCGACGAC
TCGGAAGTCCTGCTCAAGCCGCAGGCCATCTTCCCGGACCCTTTCCGCGG
GGGAGACAACATCCTCGTTATGTGCGACTGCTACAAGCCCGATATGACTC
CCATCAAGGGAAACACCCGTCTCCGATGCGCGGAGGCGATGAAGAAGGTG
GAGTCACTCGTCCCCTGGTTCGGGATCGAGCAGGAATACACCCTTTTCGA
GGCTGACGGTGTCACTCCCTTCGGATGGCCGAAGGGCGGCTTTCCGGGCG
CTCAGGGCCCGTACTACTGCTCCGTGGGGACCGAGAACGCCTTCGGTCGT
CACATCGCCGAGGCCCACTACCGGGCCTGCCTCTTTGCCAAGATCAACAT
CTCCGGTATCAACGGCGAGGTGCTGCCCGGCCAGTGGGAGTACCAGGTGG
GCCCCTCGGTCGGCATCGAGAGCGGCGACCAGATGTGGGTCTCCCGATAC
ATCCTCCAACGCGTCTGCGAGGCCTTCGGCGTCATCGTCTCCTTGGACCC
GAAGCCCATTCCCGGCGACTGGAACGGCTCAGGCTGCCACACGAATTTCT
CCACGGAGCCCATGCGAAAGCCGGGGGGCTTCACGATCATCATCGACGCC
CTGGAGAAACTGCGGGCCCGCCACGCCGAGCATATCGCGGCGTACGGGGA
GGGGAACGAGCGTCGACTTACGGGCAAGCACGAGACAGCCTCCATGGACT
CATTCTCCTACGGCGTTGCCAACCGTGGTGCCTCGTGCCGTATCCCTCGG
GCGGCCGAAAAGGACGGGGTACGTGGGGAGAGGGGAAAGAGAATTGGGCA
AGTGTGGCAGAGAGGACCAGAGAGGTTTCCTGGAAGGACAAAGCGGGCAT
GGTGGTCTTGTCAGTCAGGAGCTTGGCGGGTAAAGGGATGGCGGGGAGCC
ACCCGCCTTGCTTCGTTTCTGATGAAGTGGTGAAGTGGTGTTGGTGCGGT
ATCTGGTGTTACGCGTTATCTGAGCTTCTTTCTTGGCATTCTCCTTTTTT
GACAACCCTCACAGTGCGGATATTTCGAGGATCGACGCCCGTCATCGAAC
ATGGATCCCTACGTGGTGACTGGCATGCTTATTGAGACGTGTTGCCTGTA
GAGCTCTAGAAGGAGAAGAGAGGGCGGGAAAGGTGTGAAACGTTGAAGAA
GTTGGAATGGGAAAGAAGCTGGACATTGGCGACAACGACAGGAACGCGAT
GGCATGGGAAAGAGGTTGATCACAGAGCTTAAAGGGAGAGGAAATGATGG
CAAAGGACATCCTTGGTGACGTTTGAGAGTCGGCTTGGTTGAGGTTGAGG
GGCCAACTACCCTCTTCTTTCAGTCTTTGAGAAAAAAAGACATTTATTCA
CATGAGCAGTAACATGCGCGCGCATACATGCTTGGGGAGGGAAGATGAAT
GACGGGGGTGAAAAAGGAAGAATAAAATTTTATTGAGGGGAATGAGCCCG
GTTGTCTTTAGTGCTCTGAACGCGCGCAAGGAAATGAGCCTTTGCCACCT
TCTCCCCGATAGAAGGATGGACGTCGTCTCCAAAAACACCTCGGACGAGC
GAGGATATGGTGGCTACCAGACGTCACGAGGTTCCGACTGTGATGTCTCA
AAACAACCTTCATAAGTGTTAGGTTTTGTGCGTGGCCTACTTCTTCTTAT
GAAACACCCTTCCCC

protein sequence of rna3633

>rna3633-protein ID=rna3633-protein|Name=rna3633|organism=Nannochloropsis gaditana|type=polypeptide|length=465bp
MISDTPSRLILSLFASTVLESSMAATATAASISTMPFPSSTLGYELKSDF
PTLDQDAYPGKPLVYLDSAATSQKPRQVLEAMAAYYEQSNANVHRGVHAL
SIRATDAYEAARDKVQHFVHAGAREEIVFTRGATEAINLVAYTWGLQNLK
EGDEILLTVMEHHSNLVPWQLVAAKTGAVLKFVGLNDAEGLDMDQFYALL
SPKTKLVAFPHVSNTLGCILPAKDMAAAAHRVGAVVLVDACQSVPHMKVD
VQDLDVDFLAASSHKMCGPTGAGFLYGKLALLKEMPPWQGGGEMIDEVFL
EYSTYAGPPARFEAGTPPIAEVVGMGAACDYLTKVGMEAVEAHEQALGKY
LYEKLDEVEGLRIYGPPPGENGKGRAALAAFNTDQVHASDLAFFLDHEGV
AIRSGHHCTQPLHRMLHAKGSLRASLYVYNTKEDVDVFIAKLRETMHFFG
NFQGSGGGNAAGAGL

mRNA from alignment at CM002461.1:850775..853118-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3633 ID=rna3633|Name=rna3633|organism=Nannochloropsis gaditana|type=mRNA|length=2344bp|location=Sequence derived from alignment at CM002461.1:850775..853118- (Nannochloropsis gaditana)
TCCGTCGTCACGCCCGTCCAGGTTAGCACCCGCCCCACGCATCGTTCGAG
ATGACAAGGATACTGCTTGCATTCTCAAACTGGTCGCCGGGCTACCTGCT
GTTGCTTGCATGGGCGCTGTTGGCCTTACATCAAAACCATGCCTTTGTCA
GCAGAATCCCAAGGGAAGTGGGTGACATGCGGACTCGTTCAAGTGTGTCT
CGCAGAAGAAAGGAAACATGGAAGTATGCTCCTTTGCCGGCGGCCACCGC
CGGTATCACTTCAGGTAAGGAGTTTCATCCCTACTGTGTCCGTCTTGAGA
ATCGCACGGGCAATCCCAGATGTCTGCCCGGTCTGGTGGTTTTGAAGCTT
TAAATGGGAGAGTATGTGTGAGGTATCCGGCGGATTTGCAAGCGAAGAAA
GCCATGTATGAAACTCTCATTGTACTCATCTGATGGATGACGCGACTGAG
TTTTGTGTTGGCCGTGACAGTCATTTTCATCCCTGAGGCTTAATTTTAGA
AAGCCGTTACGGGAATGATGAGGCATAGTTAGCGCAACTTCGATGAAGAC
GCTGAAAAAATTCAGGGCAACAGTCGCGGGGGGGCATGATATCTGATACA
CCCTCACGATTAATCCTATCTTTGTTCGCATCGACAGTGCTGGAATCCAG
CATGGCAGCGACTGCTACAGCTGCCTCCATATCAACCATGCCTTTTCCCT
CTTCAACCCTCGGCTACGAGTTGAAGTCCGATTTTCCCACCCTCGACCAG
GACGCTTACCCTGGCAAGCCATTGGTCTACTTGGATAGCGCCGCGACCTC
GCAGAAGCCTCGGCAAGTCCTAGAGGCCATGGCCGCGTATTACGAGCAAA
GCAATGCCAACGTGCACAGGGGGGTGCATGCCCTGTCCATCAGGGCGACG
GACGCCTACGAAGCGGCCCGGGACAAGGTCCAGCACTTCGTCCACGCCGG
TGCCCGGGAGGAGATCGTTTTCACGCGCGGAGCCACCGAGGCCATCAACC
TGGTCGCCTACACCTGGGGCCTGCAGAACCTCAAGGAAGGGGACGAGATC
CTGCTGACGGTGATGGAGCACCACTCCAATCTCGTGCCTTGGCAACTGGT
GGCTGCCAAGACGGGGGCAGTCCTCAAGTTTGTCGGGCTCAACGACGCGG
AGGGCCTGGACATGGACCAGTTTTACGCCCTGCTTTCCCCCAAAACGAAG
TTGGTGGCATTTCCGCACGTCTCGAACACCCTGGGCTGCATTCTCCCGGC
CAAGGACATGGCGGCGGCGGCGCACAGGGTGGGTGCCGTGGTCCTCGTCG
ACGCTTGCCAGAGCGTCCCGCACATGAAGGTGGACGTGCAGGACTTGGAC
GTGGATTTCTTGGCCGCATCCAGCCACAAAATGTGTGGCCCGACAGGCGC
GGGTTTTCTCTACGGAAAGCTGGCCTTGTTGAAAGAAATGCCGCCTTGGC
AAGGAGGAGGGGAGATGATCGACGAAGTCTTTCTAGAATACTCCACCTAC
GCGGGGCCCCCGGCCCGGTTCGAGGCAGGCACTCCCCCGATCGCCGAGGT
GGTTGGGATGGGTGCGGCCTGCGACTACTTGACGAAAGTGGGGATGGAGG
CGGTGGAGGCACACGAGCAGGCCCTGGGGAAGTACCTGTACGAGAAACTG
GACGAGGTGGAGGGCTTGAGGATCTACGGGCCTCCGCCGGGAGAGAATGG
GAAGGGACGGGCGGCCCTCGCGGCGTTTAACACGGACCAGGTTCATGCCA
GCGACCTGGCCTTTTTTCTCGACCACGAGGGTGTCGCCATTCGCTCCGGC
CACCATTGCACGCAACCCTTGCATCGCATGCTGCACGCAAAGGGAAGCTT
GCGCGCCAGCTTGTACGTGTACAATACTAAGGAGGATGTGGACGTTTTCA
TCGCTAAATTGCGGGAAACGATGCACTTCTTTGGAAATTTTCAAGGGAGC
GGGGGAGGGAACGCGGCTGGGGCAGGTTTGTAAGGGGGAGGTTAAAATTG
GACGAAATGGAAGCAGGTGCAGCAAGTAACGAGAGCCATGGGAAGAGAGT
GATGGAAAGTAGCTCGAAAAGCAGGGTGGCGGGAAAAGATTGGGAAGAAG
ATTGCGTTTGAGGCAGTGGGCCTCAAAGATGCACGGAAGCGAAGCGGGGA
AGGGTGTTTCATAAGAAGAAGTAGGCCACGCACAAAACCTAACACTTATG
AAGGTTGTTTTGAGACATCACAGTCGGAACCTCGTGACGTCTGGTAGCCA
CCATATCCTCGCTCGTCCGAGGTGTTTTTGGAGACGACGTCCATCCTTCT
ATCGGGGAGAAGGTGGCAAAGGCTCATTTCCTTGCGCGCGTTCA

Coding sequence (CDS) from alignment at CM002461.1:850775..853118-

>rna3633 ID=rna3633|Name=rna3633|organism=Nannochloropsis gaditana|type=CDS|length=1398bp|location=Sequence derived from alignment at CM002461.1:850775..853118- (Nannochloropsis gaditana)
ATGATATCTGATACACCCTCACGATTAATCCTATCTTTGTTCGCATCGAC
AGTGCTGGAATCCAGCATGGCAGCGACTGCTACAGCTGCCTCCATATCAA
CCATGCCTTTTCCCTCTTCAACCCTCGGCTACGAGTTGAAGTCCGATTTT
CCCACCCTCGACCAGGACGCTTACCCTGGCAAGCCATTGGTCTACTTGGA
TAGCGCCGCGACCTCGCAGAAGCCTCGGCAAGTCCTAGAGGCCATGGCCG
CGTATTACGAGCAAAGCAATGCCAACGTGCACAGGGGGGTGCATGCCCTG
TCCATCAGGGCGACGGACGCCTACGAAGCGGCCCGGGACAAGGTCCAGCA
CTTCGTCCACGCCGGTGCCCGGGAGGAGATCGTTTTCACGCGCGGAGCCA
CCGAGGCCATCAACCTGGTCGCCTACACCTGGGGCCTGCAGAACCTCAAG
GAAGGGGACGAGATCCTGCTGACGGTGATGGAGCACCACTCCAATCTCGT
GCCTTGGCAACTGGTGGCTGCCAAGACGGGGGCAGTCCTCAAGTTTGTCG
GGCTCAACGACGCGGAGGGCCTGGACATGGACCAGTTTTACGCCCTGCTT
TCCCCCAAAACGAAGTTGGTGGCATTTCCGCACGTCTCGAACACCCTGGG
CTGCATTCTCCCGGCCAAGGACATGGCGGCGGCGGCGCACAGGGTGGGTG
CCGTGGTCCTCGTCGACGCTTGCCAGAGCGTCCCGCACATGAAGGTGGAC
GTGCAGGACTTGGACGTGGATTTCTTGGCCGCATCCAGCCACAAAATGTG
TGGCCCGACAGGCGCGGGTTTTCTCTACGGAAAGCTGGCCTTGTTGAAAG
AAATGCCGCCTTGGCAAGGAGGAGGGGAGATGATCGACGAAGTCTTTCTA
GAATACTCCACCTACGCGGGGCCCCCGGCCCGGTTCGAGGCAGGCACTCC
CCCGATCGCCGAGGTGGTTGGGATGGGTGCGGCCTGCGACTACTTGACGA
AAGTGGGGATGGAGGCGGTGGAGGCACACGAGCAGGCCCTGGGGAAGTAC
CTGTACGAGAAACTGGACGAGGTGGAGGGCTTGAGGATCTACGGGCCTCC
GCCGGGAGAGAATGGGAAGGGACGGGCGGCCCTCGCGGCGTTTAACACGG
ACCAGGTTCATGCCAGCGACCTGGCCTTTTTTCTCGACCACGAGGGTGTC
GCCATTCGCTCCGGCCACCATTGCACGCAACCCTTGCATCGCATGCTGCA
CGCAAAGGGAAGCTTGCGCGCCAGCTTGTACGTGTACAATACTAAGGAGG
ATGTGGACGTTTTCATCGCTAAATTGCGGGAAACGATGCACTTCTTTGGA
AATTTTCAAGGGAGCGGGGGAGGGAACGCGGCTGGGGCAGGTTTGTAA

Synonyms

Publications