rna363, rna363 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna363
Unique Name	rna363
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	354
Alignment location	CM002455.1:882427..883992 -

Link to JBrowse

Properties


Property Name	Value
Product	imp dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100003g133.1778.mrna
Orig protein id	gnl\|cribi\|Naga_100003g133.1778
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:882427..883992 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g133	gene350	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30261.1	cds363	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna363	rna363-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:882427..883992-
coding sequence from alignment at CM002455.1:882427..883992-

mRNA sequence

>rna363 ID=rna363|Name=rna363|organism=Nannochloropsis gaditana|type=mRNA|length=354bp
ATGGCAGTTACGAGGGCAAGGGTTAAAAACAATATGTGCTCGTACTGGGG
AGCTACCATAACTTCCTGTACAGCACCACTGAAATCTTTGAACTTTTCTC
GTTTTCTCCGTGAGAGGACTTTGATACATGGGGAAAAACAAAATTTCATC
CGAGAAGAGCAAGAACGGGGAAACGCGAAAATTCAAAGATGTGGCCCAGG
TTCAATTTACGCGGCTTCATCAAGATCTTTGGATTTGTCGATAAATCGAA
TTTTCATGGTACACAGGGCGGTCGAAGAGACACGTAACCTACTCTGTGCT
AGCTCGTTTTTGATTACCTTCAATAATCTCGAGGCAAGACCCTTCCATCA
GTGA

protein sequence of rna363

>rna363-protein ID=rna363-protein|Name=rna363|organism=Nannochloropsis gaditana|type=polypeptide|length=521bp
MNGTPLDVKTAKWEDVEMRLPKGNGGYTAMEVFEDVKGCTAYTYDDLILM
PSHIDFGVNEVILESKFTRNIALKTPMASSPMDTVTEDKMAIMMALHGGI
GVVHYNCTISEQAEMVNKVKKYKNGFIHDPIVLGPDNTVADVERITAAKG
FAGFPITENGKLGGRLVGMIARRDVDFVDDKDTKLSKLMVTDVVTAKDGV
TLEQANAIIRTSKKGKLPIVNDAGELVSLISRADIKKSRDYPLASKDANK
QLLCGAAIGTRPSDRDRLSALVAAGVDVIIIDSSQGDSIFQYEMISHIKT
AFPDVQVVAGNVVTAQQAFNLIKAGADGLRVGMGSGSICTTQEVCAAGRA
ACSAIYHTSRLAGMFGVPVIADGGIGSTGHIVKAFSVGASCVMMGSLLAG
TEEAPGEYFYQDGVRLKRYRGMGSVEAMAKGSEKRYFASNAVVKVAQGVS
GAVTDRGSMGRYIPYLTTGVRHGLQDLGTISLADLHKRRESGLLRFEVRS
PAAQREGGVHGLHMHERKLFS

mRNA from alignment at CM002455.1:882427..883992-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna363 ID=rna363|Name=rna363|organism=Nannochloropsis gaditana|type=mRNA|length=1566bp|location=Sequence derived from alignment at CM002455.1:882427..883992- (Nannochloropsis gaditana)
ATGAACGGTACACCTCTCGACGTGAAGACGGCCAAATGGGAGGACGTGGA
GATGCGGCTGCCAAAAGGCAACGGGGGCTACACGGCCATGGAGGTGTTTG
AAGATGTGAAAGGCTGCACAGCGTACACGTACGATGATCTGATTTTAATG
CCATCTCATATCGACTTCGGTGTAAACGAGGTAATTTTAGAGAGTAAATT
CACGCGCAATATTGCTTTGAAGACCCCAATGGCGTCGTCGCCCATGGACA
CCGTGACCGAGGACAAAATGGCCATCATGATGGCCTTACACGGCGGCATT
GGTGTGGTCCATTACAACTGCACAATCAGCGAGCAGGCAGAGATGGTCAA
TAAGGTTAAGAAGTATAAGAATGGTTTCATCCACGATCCCATTGTTCTGG
GCCCTGACAACACGGTAGCTGATGTCGAGCGAATTACAGCTGCGAAAGGA
TTCGCAGGATTTCCGATAACGGAAAATGGAAAATTGGGAGGGCGCCTGGT
AGGGATGATTGCCCGCCGGGACGTTGACTTCGTGGATGATAAGGATACCA
AGCTCTCCAAGCTTATGGTCACGGATGTGGTGACGGCTAAGGATGGCGTT
ACTTTGGAGCAGGCGAATGCCATCATCCGCACCTCGAAGAAAGGGAAATT
ACCTATTGTGAATGATGCCGGCGAATTAGTGTCGCTCATCTCGCGAGCCG
ATATTAAAAAGAGTCGGGACTATCCCTTGGCCTCGAAGGATGCGAACAAG
CAATTGTTGTGCGGGGCAGCAATCGGCACTCGTCCCAGCGATCGAGACCG
TTTATCTGCCCTGGTGGCTGCAGGAGTCGACGTCATTATCATCGACTCAT
CCCAAGGCGACTCTATATTTCAGTACGAAATGATTTCACACATTAAAACC
GCATTCCCCGATGTCCAAGTTGTTGCTGGAAACGTTGTAACAGCTCAACA
AGCGTTTAACCTCATAAAGGCAGGCGCGGATGGTCTGCGTGTGGGAATGG
GATCTGGCTCGATCTGTACTACTCAGGAGGTATGCGCAGCCGGGCGCGCG
GCTTGCTCTGCCATTTATCACACCAGCCGACTGGCCGGAATGTTTGGCGT
TCCTGTAATCGCAGACGGGGGCATTGGGAGCACGGGTCACATAGTGAAAG
CATTCTCTGTGGGAGCGTCTTGTGTCATGATGGGTTCGTTGCTTGCAGGA
ACTGAGGAGGCTCCGGGCGAATATTTCTATCAGGATGGCGTCCGCTTGAA
GCGATACCGCGGCATGGGGTCTGTTGAGGCAATGGCTAAGGGCTCGGAAA
AGCGCTACTTTGCCTCTAATGCTGTTGTCAAGGTAGCCCAGGGTGTAAGT
GGTGCCGTCACGGACCGTGGCTCCATGGGACGTTACATCCCCTACCTTAC
AACGGGCGTGCGCCATGGACTTCAGGATCTGGGTACCATCTCACTGGCCG
ACCTTCACAAGCGACGGGAGTCAGGTTTGCTGCGCTTTGAGGTGAGGTCT
CCAGCCGCGCAGCGCGAGGGTGGAGTGCATGGCTTACACATGCATGAACG
GAAGCTCTTCTCCTAG

Coding sequence (CDS) from alignment at CM002455.1:882427..883992-

>rna363 ID=rna363|Name=rna363|organism=Nannochloropsis gaditana|type=CDS|length=1566bp|location=Sequence derived from alignment at CM002455.1:882427..883992- (Nannochloropsis gaditana)
ATGAACGGTACACCTCTCGACGTGAAGACGGCCAAATGGGAGGACGTGGA
GATGCGGCTGCCAAAAGGCAACGGGGGCTACACGGCCATGGAGGTGTTTG
AAGATGTGAAAGGCTGCACAGCGTACACGTACGATGATCTGATTTTAATG
CCATCTCATATCGACTTCGGTGTAAACGAGGTAATTTTAGAGAGTAAATT
CACGCGCAATATTGCTTTGAAGACCCCAATGGCGTCGTCGCCCATGGACA
CCGTGACCGAGGACAAAATGGCCATCATGATGGCCTTACACGGCGGCATT
GGTGTGGTCCATTACAACTGCACAATCAGCGAGCAGGCAGAGATGGTCAA
TAAGGTTAAGAAGTATAAGAATGGTTTCATCCACGATCCCATTGTTCTGG
GCCCTGACAACACGGTAGCTGATGTCGAGCGAATTACAGCTGCGAAAGGA
TTCGCAGGATTTCCGATAACGGAAAATGGAAAATTGGGAGGGCGCCTGGT
AGGGATGATTGCCCGCCGGGACGTTGACTTCGTGGATGATAAGGATACCA
AGCTCTCCAAGCTTATGGTCACGGATGTGGTGACGGCTAAGGATGGCGTT
ACTTTGGAGCAGGCGAATGCCATCATCCGCACCTCGAAGAAAGGGAAATT
ACCTATTGTGAATGATGCCGGCGAATTAGTGTCGCTCATCTCGCGAGCCG
ATATTAAAAAGAGTCGGGACTATCCCTTGGCCTCGAAGGATGCGAACAAG
CAATTGTTGTGCGGGGCAGCAATCGGCACTCGTCCCAGCGATCGAGACCG
TTTATCTGCCCTGGTGGCTGCAGGAGTCGACGTCATTATCATCGACTCAT
CCCAAGGCGACTCTATATTTCAGTACGAAATGATTTCACACATTAAAACC
GCATTCCCCGATGTCCAAGTTGTTGCTGGAAACGTTGTAACAGCTCAACA
AGCGTTTAACCTCATAAAGGCAGGCGCGGATGGTCTGCGTGTGGGAATGG
GATCTGGCTCGATCTGTACTACTCAGGAGGTATGCGCAGCCGGGCGCGCG
GCTTGCTCTGCCATTTATCACACCAGCCGACTGGCCGGAATGTTTGGCGT
TCCTGTAATCGCAGACGGGGGCATTGGGAGCACGGGTCACATAGTGAAAG
CATTCTCTGTGGGAGCGTCTTGTGTCATGATGGGTTCGTTGCTTGCAGGA
ACTGAGGAGGCTCCGGGCGAATATTTCTATCAGGATGGCGTCCGCTTGAA
GCGATACCGCGGCATGGGGTCTGTTGAGGCAATGGCTAAGGGCTCGGAAA
AGCGCTACTTTGCCTCTAATGCTGTTGTCAAGGTAGCCCAGGGTGTAAGT
GGTGCCGTCACGGACCGTGGCTCCATGGGACGTTACATCCCCTACCTTAC
AACGGGCGTGCGCCATGGACTTCAGGATCTGGGTACCATCTCACTGGCCG
ACCTTCACAAGCGACGGGAGTCAGGTTTGCTGCGCTTTGAGGTGAGGTCT
CCAGCCGCGCAGCGCGAGGGTGGAGTGCATGGCTTACACATGCATGAACG
GAAGCTCTTCTCCTAG

Synonyms

Publications