rna3628, rna3628 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3628
Unique Name	rna3628
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1314
Alignment location	CM002461.1:840161..842289 -

Link to JBrowse

Properties


Property Name	Value
Product	endoplasmic reticulum protein
Orig transcript id	gnl\|cribi\|Naga_100056g30.10448.mrna
Orig protein id	gnl\|cribi\|Naga_100056g30.10448
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:840161..842289 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g30	gene3495	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3628	rna3628-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27035.1	cds3619	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:840161..842289-
coding sequence from alignment at CM002461.1:840161..842289-

mRNA sequence

>rna3628 ID=rna3628|Name=rna3628|organism=Nannochloropsis gaditana|type=mRNA|length=1314bp
TTTACTATAATTATCACAGTTCTGGCCTCATTTCCTGCGTCTACCTCCTT
CGCTTATTCCACCATCACATGCGTCGGTCTCTCCCGGCATATTTGTCGTA
CTTACTATTGCTCGGCCCGTGTTGCTCCCCAACAGTAAGCTTCAATTTAG
CGCCTCAATTCTCCATCTTCAAGCACCTACACCCGCCATTGCGGACATCC
ACTATCAAAATGTCAGTAAAGCCTCCTAAAGTCTTGGGCATGGGCATCAC
CGGTGTTGACCTGCTGGCTTATGTGGAAACCTATCCAGCAGCGGATGCTA
AGATCCGAACGAGCGATTTCAAGATCCAAGGCGGGGGCAACGCCGGAAAT
ACTCTTACTGGACTCTGTCGCTTGGGCGTTCGCACCGAAATACTGACCAA
AGTAGGAAATGATGCTTACGGTTCTATGATTCTGGAAGAATTCGCCATTG
ACGGTCTCGACACCCGCCATGTAATCCGGAAGGCAGGCATCTCCTCGCCT
TTCACTTACGTGATTGTTGACATGGCCGGTCAAACCCGCACCTGCTTGCA
TACACCTTCAGAGGACTTAACAGAGGACGAGATCAACCCCGCTGTGTTGG
ATGGTGTAGATTTTCTTCACCTAGACGGACGCAATACGTTAGCCGCCATC
AGATTAGCGCAGCTGGCCAATGCCCGTGGGATCCCCGTGATGCTGGACGC
CGAGAAAGATCGGCCACATCTCAGGGAATTGGTGCCCTTGTGTGACTTTC
TTGCTACTAACGCCGTGTTCCCGAAGGCGTTTACGGGCGCCGCGAGCACA
GAGGAGGGCATGGCCAGACTGCTGGACATGGGCCGCGCAAGACTTGTCTT
CACGACCTTGGGCGCAAAGGGCAGTATGGTGATGGGCCTGCCTAGCGAGA
TGATAGGGGGGAAGCGAGGCGGAGACGGTAACGAAAAGGAGAGACGTGAA
CCGAGGGCGGGAGAGGCGCTGCCGTTGGCGACGGAGACAAGGAGCTACGC
ATGCCCCTCGACGGGTTTGGCACTGACGCTCGTGAGATGTGACGCCTGGC
CCGTGCTTCCGGAAGACATCGTCGACACCACAGGGGCGGGAGACGCTTTC
ATCGCGGGGCTTATTTATGGCTTGGTGCACTCCTTGTCAGTGCCACACAT
GCTCAATCTGGCAGGGTTCGTGGCGGCGCAAAAGCTCCAGGCCCCGGGGG
CTAGACAAGGGTTGCCTCGACGGGAGACGCTTCCAGCCCGGCTTCAGGAA
GAGGGGTAAAATCGATCTCAATATGTGACATTGTCAAAAAGCAAAACGAC
GAGGAGTATGCATG

protein sequence of rna3628

>rna3628-protein ID=rna3628-protein|Name=rna3628|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MMILWTLPVYTLVAVIAISAEASPVDILGIPRSADPLYAAAKAKGKFTCQ
SDKKIVIPFVQVNDNYCDCPDGSDEPGTSACAPQGRFYCVNEGHVGASIP
SSKVNDGICELACCDGSDEAPGLCPNTCREIAAQKAKERAAWRQVVEEGM
AKKKQYMRDASAMMEARYKELASLQAQKVGLEKKVADARIEKESEEGKEN
VKRDEAMEQAATTLISGLKIESLGQEELVSLHRKLKGRPGKALRRVLEEI
RGKAGIEEVEGEEEGEGGEQRPLSDIAAKEEMEKKMKEVKEGTFHDQLGP
VPAEDEDEDAEGDEDDDEEIEDDDYSPPDAAQEPLDPALVSLLEAAEEGL
DEPSAGAEAARQALKDARDEERTVRERIQEMEAESQDDYGDGYAFYLLRG
KCFSKTVNKYRYEMCPYKEAQQVEGSAARGTSLGKWGGMEQSNGTVAGGS
SFKFLFRKGQQCWNGPERSLTVTVECGVEDQVVSVEEPSMCEYAMTFKTP
AACSPALLEWDDQEAAGREAFHSEL

mRNA from alignment at CM002461.1:840161..842289-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3628 ID=rna3628|Name=rna3628|organism=Nannochloropsis gaditana|type=mRNA|length=2129bp|location=Sequence derived from alignment at CM002461.1:840161..842289- (Nannochloropsis gaditana)
TAAAGAGGGGAAAAGGCGATTATGGCAAACATGCCAAGGGCAATATATAT
GAAAAGGCAGTCCCAAAAAAGCTTCAACGGTGACCCAGGCAATGGATGTC
GTGTGTCACGTCTCATTCGGTAAGGCTTGCTGAGTGTCCGCAACTCAGCA
AGCCTTGTTGTCATTCTGGCGGCGAGAGCTACTTCACCAAAAAAAAGCTG
CCGCTCAACCAATAGCCCGAACAAAGCTTGCCTAATTCGTGCACACATAA
TGTCATAGATTATGATGATACTCTGGACGCTCCCCGTTTATACTTTGGTG
GCAGTCATAGCAATAAGCGCCGAGGCCAGTCCCGTCGACATCTTAGGAAT
TCCACGGTCCGCTGATCCTCTTTATGCCGCTGCCAAGGCTAAGGGGAAAT
TCACCTGCCAAAGCGATAAAAAGATCGTCATTCCGTTTGTACAGGTGGGC
TATGGAGGCTAGGGGCGCTTGACGATGTGTGCTTGTTTTCTGTTGGATAC
ATAGTGCATCTGGAGAGAATTTCAATGCACGGTAACGTAGTGGGGGGCAC
TTCTTTCAATGAATCTCAACGCATCGGACTCCACATCTCCAACCTAGGTG
AACGACAACTATTGTGATTGTCCAGATGGAAGTGATGAGCCTGGCACAAG
CGCTTGCGCTCCTCAAGGTCGTTTTTACTGTGTGAACGAGGGGCACGTGG
GTGCCTCAATCCCTTCCTCGAAAGTGAACGACGGGATCTGTGAGCTCGCT
TGCTGCGACGGCAGCGACGAAGCGCCAGGGTTATGTCCGAATACGTGCAG
GGAAATCGCGGCCCAAAAGGCCAAAGAGCGAGCGGCTTGGAGACAAGTGG
TGGAGGAGGGGATGGCGAAGAAGAAGCAATACATGCGAGACGCGTCGGCT
ATGATGGAGGCCCGGTACAAGGAGCTCGCCTCCTTGCAAGCGCAGAAGGT
AGGGTTGGAGAAAAAAGTTGCAGATGCCCGCATTGAAAAGGAATCGGAGG
AGGGGAAGGAAAACGTTAAACGTGACGAGGCTATGGAGCAGGCGGCGACG
ACTTTGATATCTGGTTTAAAGATAGAGAGCTTGGGCCAGGAAGAGTTGGT
GTCCCTGCACAGAAAGCTGAAGGGTCGCCCGGGTAAGGCGTTGAGGAGAG
TCTTAGAAGAGATCCGGGGCAAGGCGGGGATCGAGGAGGTGGAGGGAGAG
GAGGAGGGAGAGGGAGGCGAGCAGCGGCCCTTGTCGGACATAGCGGCCAA
GGAGGAGATGGAGAAGAAAATGAAAGAGGTCAAAGAGGGCACGTTCCACG
ATCAGCTGGGTCCGGTGCCGGCGGAGGACGAGGACGAGGACGCGGAGGGG
GACGAGGACGATGACGAAGAGATTGAAGACGATGACTATTCCCCTCCGGA
CGCCGCACAGGAGCCATTGGACCCTGCTTTAGTGTCCCTCCTGGAGGCAG
CAGAGGAGGGCCTTGATGAGCCCTCGGCCGGTGCGGAGGCAGCTCGACAG
GCGCTGAAGGATGCGCGAGATGAAGAGAGAACAGTGCGCGAACGCATCCA
GGAGATGGAGGCGGAGAGCCAGGACGACTACGGTGACGGTTACGCGTTTT
ACTTGCTCCGGGGGAAGTGCTTTAGCAAGACGGTGAACAAGTATCGGTAC
GAAATGTGTCCCTACAAAGAGGCGCAGCAAGTGGAGGGCAGTGCGGCCCG
TGGCACCTCTCTGGGGAAGTGGGGAGGTATGGAGCAAAGCAACGGTACAG
TCGCCGGAGGCTCATCTTTCAAATTTCTCTTTCGCAAGGGACAGCAATGT
TGGAACGGTCCCGAGAGATCACTGACGGTCACGGTGGAATGCGGTGTGGA
GGACCAGGTAGTGAGCGTGGAAGAGCCGTCTATGTGTGAGTACGCGATGA
CCTTCAAGACTCCGGCGGCGTGCTCGCCCGCGCTCCTCGAGTGGGACGAC
CAGGAGGCAGCGGGCAGGGAGGCCTTTCATTCCGAACTTTAACCAAGACA
AATGGAGAAAAAGGGACACAGGGCGAGCGGGGACTTGTATTAGAAGGCGG
GGGCCACATAGAACGAAAGATTAAGAAAAAGCCAAGGTAGTCAAGACCAA
GTCAAACGGGCCTCTTCGGCCAATACTCA

Coding sequence (CDS) from alignment at CM002461.1:840161..842289-

>rna3628 ID=rna3628|Name=rna3628|organism=Nannochloropsis gaditana|type=CDS|length=3156bp|location=Sequence derived from alignment at CM002461.1:840161..842289- (Nannochloropsis gaditana)
GTGAACGACAACTATTGTGATTGTCCAGATGGAAGTGATGAGCCTGGCAC
AAGCGCTTGCGCTCCTCAAGGTCGTTTTTACTGTGTGAACGAGGGGCACG
TGGGTGCCTCAATCCCTTCCTCGAAAGTGAACGACGGGATCTGTGAGCTC
GCTTGCTGCGACGGCAGCGACGAAGCGCCAGGGTTATGTCCGAATACGTG
CAGGGAAATCGCGGCCCAAAAGGCCAAAGAGCGAGCGGCTTGGAGACAAG
TGGTGGAGGAGGGGATGGCGAAGAAGAAGCAATACATGCGAGACGCGTCG
GCTATGATGGAGGCCCGGTACAAGGAGCTCGCCTCCTTGCAAGCGCAGAA
GGTAGGGTTGGAGAAAAAAGTTGCAGATGCCCGCATTGAAAAGGAATCGG
AGGAGGGGAAGGAAAACGTTAAACGTGACGAGGCTATGGAGCAGGCGGCG
ACGACTTTGATATCTGGTTTAAAGATAGAGAGCTTGGGCCAGGAAGAGTT
GGTGTCCCTGCACAGAAAGCTGAAGGGTCGCCCGGGTAAGGCGTTGAGGA
GAGTCTTAGAAGAGATCCGGGGCAAGGCGGGGATCGAGGAGGTGGAGGGA
GAGGAGGAGGGAGAGGGAGGCGAGCAGCGGCCCTTGTCGGACATAGCGGC
CAAGGAGGAGATGGAGAAGAAAATGAAAGAGGTCAAAGAGGGCACGTTCC
ACGATCAGCTGGGTCCGGTGCCGGCGGAGGACGAGGACGAGGACGCGGAG
GGGGACGAGGACGATGACGAAGAGATTGAAGACGATGACTATTCCCCTCC
GGACGCCGCACAGGAGCCATTGGACCCTGCTTTAGTGTCCCTCCTGGAGG
CAGCAGAGGAGGGCCTTGATGAGCCCTCGGCCGGTGCGGAGGCAGCTCGA
CAGGCGCTGAAGGATGCGCGAGATGAAGAGAGAACAGTGCGCGAACGCAT
CCAGGAGATGGAGGCGGAGAGCCAGGACGACTACGGTGACGGTTACGCGT
TTTACTTGCTCCGGGGGAAGTGCTTTAGCAAGACGGTGAACAAGTATCGG
TACGAAATGTGTCCCTACAAAGAGGCGCAGCAAGTGGAGGGCAGTGCGGC
CCGTGGCACCTCTCTGGGGAAGTGGGGAGGTATGGAGCAAAGCAACGGTA
CAGTCGCCGGAGGCTCATCTTTCAAATTTCTCTTTCGCAAGGGACAGCAA
TGTTGGAACGGTCCCGAGAGATCACTGACGGTCACGGTGGAATGCGGTGT
GGAGGACCAGGTAGTGAGCGTGGAAGAGCCGTCTATGTGTGAGTACGCGA
TGACCTTCAAGACTCCGGCGGCGTGCTCGCCCGCGCTCCTCGAGTGGGAC
GACCAGGAGGCAGCGGGCAGGGAGGCCTTTCATTCCGAACTTTAAATGAT
GATACTCTGGACGCTCCCCGTTTATACTTTGGTGGCAGTCATAGCAATAA
GCGCCGAGGCCAGTCCCGTCGACATCTTAGGAATTCCACGGTCCGCTGAT
CCTCTTTATGCCGCTGCCAAGGCTAAGGGGAAATTCACCTGCCAAAGCGA
TAAAAAGATCGTCATTCCGTTTGTACAGGTGAACGACAACTATTGTGATT
GTCCAGATGGAAGTGATGAGCCTGGCACAAGCGCTTGCGCTCCTCAAGGT
CGTTTTTACTGTGTGAACGAGGGGCACGTGGGTGCCTCAATCCCTTCCTC
GAAAGTGAACGACGGGATCTGTGAGCTCGCTTGCTGCGACGGCAGCGACG
AAGCGCCAGGGTTATGTCCGAATACGTGCAGGGAAATCGCGGCCCAAAAG
GCCAAAGAGCGAGCGGCTTGGAGACAAGTGGTGGAGGAGGGGATGGCGAA
GAAGAAGCAATACATGCGAGACGCGTCGGCTATGATGGAGGCCCGGTACA
AGGAGCTCGCCTCCTTGCAAGCGCAGAAGGTAGGGTTGGAGAAAAAAGTT
GCAGATGCCCGCATTGAAAAGGAATCGGAGGAGGGGAAGGAAAACGTTAA
ACGTGACGAGGCTATGGAGCAGGCGGCGACGACTTTGATATCTGGTTTAA
AGATAGAGAGCTTGGGCCAGGAAGAGTTGGTGTCCCTGCACAGAAAGCTG
AAGGGTCGCCCGGGTAAGGCGTTGAGGAGAGTCTTAGAAGAGATCCGGGG
CAAGGCGGGGATCGAGGAGGTGGAGGGAGAGGAGGAGGGAGAGGGAGGCG
AGCAGCGGCCCTTGTCGGACATAGCGGCCAAGGAGGAGATGGAGAAGAAA
ATGAAAGAGGTCAAAGAGGGCACGTTCCACGATCAGCTGGGTCCGGTGCC
GGCGGAGGACGAGGACGAGGACGCGGAGGGGGACGAGGACGATGACGAAG
AGATTGAAGACGATGACTATTCCCCTCCGGACGCCGCACAGGAGCCATTG
GACCCTGCTTTAGTGTCCCTCCTGGAGGCAGCAGAGGAGGGCCTTGATGA
GCCCTCGGCCGGTGCGGAGGCAGCTCGACAGGCGCTGAAGGATGCGCGAG
ATGAAGAGAGAACAGTGCGCGAACGCATCCAGGAGATGGAGGCGGAGAGC
CAGGACGACTACGGTGACGGTTACGCGTTTTACTTGCTCCGGGGGAAGTG
CTTTAGCAAGACGGTGAACAAGTATCGGTACGAAATGTGTCCCTACAAAG
AGGCGCAGCAAGTGGAGGGCAGTGCGGCCCGTGGCACCTCTCTGGGGAAG
TGGGGAGGTATGGAGCAAAGCAACGGTACAGTCGCCGGAGGCTCATCTTT
CAAATTTCTCTTTCGCAAGGGACAGCAATGTTGGAACGGTCCCGAGAGAT
CACTGACGGTCACGGTGGAATGCGGTGTGGAGGACCAGGTAGTGAGCGTG
GAAGAGCCGTCTATGTGTGAGTACGCGATGACCTTCAAGACTCCGGCGGC
GTGCTCGCCCGCGCTCCTCGAGTGGGACGACCAGGAGGCAGCGGGCAGGG
AGGCCTTTCATTCCGAACTTTAAATGATGATACTCTGGACGCTCCCCGTT
TATACTTTGGTGGCAGTCATAGCAATAAGCGCCGAGGCCAGTCCCGTCGA
CATCTTAGGAATTCCACGGTCCGCTGATCCTCTTTATGCCGCTGCCAAGG
CTAAGGGGAAATTCACCTGCCAAAGCGATAAAAAGATCGTCATTCCGTTT
GTACAG

Synonyms

Publications