rna3625, rna3625 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3625
Unique Name	rna3625
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2779
Alignment location	CM002461.1:835070..837287 +

Link to JBrowse

Properties


Property Name	Value
Product	Peptidase M50
Orig transcript id	gnl\|cribi\|Naga_100056g33.10462.mrna
Orig protein id	gnl\|cribi\|Naga_100056g33.10462
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:835070..837287 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g33	gene3492	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3625	rna3625-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27049.1	cds3616	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:835070..837287+
coding sequence from alignment at CM002461.1:835070..837287+

mRNA sequence

>rna3625 ID=rna3625|Name=rna3625|organism=Nannochloropsis gaditana|type=mRNA|length=2779bp
CGAGATCGCTATTTGATAGCCACTCCACCTTTCCCTTTACACACCCAAAA
AAAAAGTGAACCAGCCATGGACCCTTTCCTGCACTTGTCCCGAATCCACA
CACAGGTCAGTACAGGATGTTTACCGGACTCATGGGAAGCATGATGGTTC
CTGCATAGATCTACGACGGTCAGGTGGCAATCTGCTCGCGACGAGAGGGG
CAGTGCATCGCCGGACCTCACTTTGTTCCACCTGCCCGTCACCTTTTGGA
GTCTCGCCCGTTTGCCTTCCTTCCAGAACGATGACGACCCCGTCACCGTC
TTCATCGACGACGACGCGAGGACGACGGCTTTCCTCCCTGACCGAGTTAA
TGGACGCCGTGGGCAGCCTGTTTCCCCATCCCGTCCAACACATGCAGTCA
ATGCAGGCTCCTCCCTCCGCGGTGACCCGTTACCACTCGATATTAAAAAC
AGAGAATTCTCGACTCCTAGGGCAAGCAGATAAAGCAAAAAGGGCTCTTT
CAGCACTTGAAAAAACATCTCTTACCGAGAAAAATCAACTTTTGAGGACG
GGGGGCCGGAAGCATCTCGGTTTGTGGCGCCACCATACCTCGCTGAGAAG
GGCCTTGCTGGAACTGGAGCACGAACAATGGAGACAAGCTGCGACAATTT
TACAGAAACAGGAATTGATAGTGCTGTCCTGGCTTCGCGAGGTCGATGCC
AGGAAGGAAAAGGTAAAAAAGGGACCAAGGGGAACAGGGGAACAAGAGAG
GGAGGAGCCAAAGTCCTCTGCCATCATGCGACCGCCAGCTGAGTTATTAG
AAGCCGATAGTGGCGTCAAAATATTGAAGAGACGGCGATTTTGCCTCGCA
CGCCTGTGCGACCAGGCAGAGAAAGCCATGGGTAAGGTGATAGGGGAGAC
AGGGTGGGCGGGTGCGGAGGGCGGGGAAGAACGGCGACTGAGGCTGTTGG
GCTTAATCGAGGAGGCCCAGGCGCTGTACTTGGACGATGGAGACGCCGTA
GACGTGGTGCATCCTGTGCGCGATGTCACCGGGCCGGAATCCTCTGGCAT
CTCATCCTCCACGGGGGCTTACACCTCGAGGCCCCTCCTGGTCCCCCCTG
ACTCCTCCTCCTCCCCGCTGCCTTGTCGCCCCTCTCCTGCGACCTCCGTG
CCCCCATCGACCCAATCCTCCGTCAACGTGCCCCTGCTGCCGAGCTGCAG
CCAGCCTGGACCCCGTCAGGCCCACGGCGTGATGGGCAGGCGGCGGCAGC
GCGTAGAGGCTGCTTTCGCCTTTCTCTTGGAGGATCAACGCTACCGGGAG
GGTCGACTCCTGGACAGATGGCTGACGTTGCTGGAAGAGAGCGCCAGCCA
GAGCAATGTCTCTGCTGCCTCTCGGACGCGAGGTGAGGGCCAAGGAGGGC
TCCCCGGTGCCGTCTCGGCGCTTGGCCGCTCCCTCCCCACCACCACGACT
GCGGTCAGCAACGGCAGCGGCAGCCCCCGGGACACGTACCTCTACACGCC
CCGCTGCATCGTTGCCTTCATCAACTACTTTGTGCACGACCGGCTCCTGG
TTCCCTATGCCCTTCCCCCCGCCCTCCGCCCCGCCCTCCTCGGGCTCATG
CAGGCCCTGGTGTTCCGCCGAGCCCGACGTGCGTCCTCCGGGTATGTGAA
AGGCGGCGACCAAGTCTTTCCCGAGCTCAACAAGCAATGGCGGGAGCAGG
TACAGGCAGCCCGCCGCCTGGACGCCACCGCGCTGGGCGTGCCCCCCCCC
TACCTGTGGGGGTGCCCCTTCCCGGAGACGGCCCGGGTTTTGAGCGAGAT
GGCGCTCTCTATGACGCCCTTGGAGATGACGGAAGCCCTTTTAAGAGCTG
TCAGGTGCTTGCACCACGAGGCAGGTGCTGCAGCGGTAAAGGCGCAGAGG
GAGGGGCGCCTTCAAAAATTGCAACGGGCAGGTGGAGAAGGAGGAGGGGA
GGGAGACCGGGAAGCCAGGACGGCCGAGTCAGAGCCCGCGCATTCCCTGC
CGGCGGATGTGCTCTTCCCTTTGCTCGTGTATGCCTTGGTGCAGTCCGAG
TGCCCGGATATTTTCTCCTGCCTCTACGTGCTGCGGCACTTCGCCTCCGG
AAATCACGTGGGAGAACAAGCCTACTATTGCACTACCCTGGAGGCGGCCG
TGGCTCATATTTTCTGGCTGCCCGTAGGGGAGGAAAGGAGGAGGGAAGGG
GGTAGCCACGTCGCCGCGGAGGACGAGACCGGGGGAAGGGAAGGAGGATT
GCAAGAGGCGGTGGAGGAGGAAGGAGGGATGGAGGAGCCAGTGCTTGAGG
ACTTGGGCCCGTCCTTCTCGGTGGAGGAGCAAGAGAGGGGCCTGCAGTTC
CTGGACGAGTGGTTGGCGGCAGAAGCGGCGATGGAGGAAACCATGGACAT
TTTGGAACAAGACGGATGGTTTTGAGGGATTGGAGTGGAATACTCGGAAA
GCCTTAATCATGGGCAGCTTGTACCGGCGGGGCTCACTCGAGGCAGTACT
TTCAGTTCGTTTCTTTTCCGCCCTCTCTTTGAGTTACCTGCAATCCCCAA
CACCACACACCGCCATTACTGTACATGCTCCCCAGAGTGCCTACCTTCCC
TCTCTCTACACTTTTCTCGTGCCTATTCCCGCGCCCGGGGAGAAGCGGAG
CAAGACAAGAAGAGGTAGCTGAAGGCCGACATGAAGAGCTGGCAGTCCAC
ACGGTCCATGACCCCGCCGTGTCCGGGTATGCTGTCGCCGAAATCCTTCG
TCCCCGTCGCCCGCTTGGCGGCGGATGCC

protein sequence of rna3625

>rna3625-protein ID=rna3625-protein|Name=rna3625|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MRRHCHVFAAATGLLCLSGSILAFRPPAFQAVSRTKSTLAHGLGSKLLRP
RLPARHDRPVKAALDPESISTAVNVAAGASNPLSGITNNLTSLLVLAVIV
AVHEMGHFIGARSQGIKVRNFSIGFGPRLLSFKEGPEDDDIEYTLRAIPM
GGFVSFPPHYEIDNDGDMIRYEDKDLLQNRPPLQQAIVISAGVIANILLS
FSLLLGSVATTGLPRPQFSDGPYVMRLVEKDCPAARAGIQPEDLILAVNG
HKVSGDEKGLNGAVSLISQSNGQPVELQLRRKGVELLKTVTPQLNPETGR
NSIGVQMAAHIEKVKLIKAKDPAQALEYSVQELGAMLREASSSLRRFSSA
GMEGLTGPLGIVQVGADLAAVDQLALIKFAAFISINLAVVNALPFPGLDG
GQMIFVLLEALRGKRLSPQLENGINAVAVLLLASLSLSLIAGDITRGMSS
LDKVIEANPLLDSPLK

mRNA from alignment at CM002461.1:835070..837287+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3625 ID=rna3625|Name=rna3625|organism=Nannochloropsis gaditana|type=mRNA|length=2218bp|location=Sequence derived from alignment at CM002461.1:835070..837287+ (Nannochloropsis gaditana)
TATCAAATAGCGATCTCGCCAGCGTCTGTCCTCTGACTCGTTCCTGATAG
AAGCGTGGACAATTAGGGCACTCGGTCGCCTGCAACGATACGGTGCAATA
ACAGATGAACAGATTGCCGCAACTTGATTTTTGCTCACACGCGAGACGGG
CCGATATTCGTGTTTTTACatgcaaggaagggggaggggaagtagctgag
gaagaggggatcGAAAAAGCTGACGACGCGAAGAGATGTTGTGGTCTGAC
TGAGTTGATCCACGTTGAGCCGATCAAAAGTGTTCCACGTTTTATGAAAG
ACTTTTATTATCACGTGTTGCACTGTCAGTTTGGCATAAAAGCAGGGAGT
GTCCATTCTTTTGGCTAACATCCTCCCCCTACACCCTCCTTACGTCACCG
TTTTTCCATAGACTCACCCCTTCACCCAGACGTGCGTCCTCGCGTTAAGA
AGAACCATGCGGCGTCATTGCCACGTCTTTGCGGCTGCCACTGGACTTCT
ATGTTTAAGCGGGAGCATATTGGCGTTTCGCCCCCCTGCTTTCCAAGCCG
TGAGCCGGACCAAGTCCACGCTTGCGCATGGTCTCGGAAGCAAGCTCTTG
AGACCTCGACTTCCCGCGAGGCACGACCGTCCCGTTAAAGCTGCCTTGGA
CCCGGAGAGCATCTCGACCGCGGTCAATGTGGCTGCGGGTGCAAGCAACC
CCCTCTCGGGCATCACCAACAAcctgacctccctcctcgtcctggcAGTG
ATCGTGGCAGTGCACGAAATGGGGCACTTCATCGGGGCCCGCTCCCAGGG
CATCAAAGTGCGGAACTTCAGTATTGGCTTTGGTCCTCGATTGTTGTCCT
TCAAGGAGGGGCcagaggacgacgacatTGAGTACACGCTGCGGGCGATC
CCCATGGGCGGCTTTgtgtcctttcccccccactaCGAGATCGACAACGA
CGGGGACATGATCCGGTACGAGGATAAGGACCTCCTGCAAAATCGCCCCC
CCCTGCAGCAAGCTATCGTCATCTCTGCCGGGGTGATCGCAAATATtctc
ttgtccttctccctcctcctcggctctGTGGCCACCACCggcctccctcg
acctcaGTTCAGCGATGGGCCCTACGTCATGCGCCTGGTCGAGAAGGACT
GCCCGGCCGCCCGAGCCGGCATCCAACCCGAAGATTTGATCCTGGCTGTG
AATGGGCACAAGGTGAGcggggacgagaaagggcTTAATGGTGCCGTTTC
CCTCATCTCCCAGTCCAACGGCCAGCCCGTTGAGTTGCAGCTTCGGCGCA
AAGGAGTCGAACTGTTGAAAACGGTAACCCCTCAGTTGAATCCGGAAACG
GGCCGCAACAGCATCGGTGTCCAGATGGCGGCGCACATTGAAAAAGTGAA
GCTGATCAAAGCCAAAGACCCTGCACAGGCCTTGGAGTACTCAGTTCAAG
AGCTTGGTGCCATGCTGCGGgaagcctcctcttccttgcgccgcttttcc
tccgcgGGCATGGAGGGCTTGACAGGCCCATTGGGTATTGTGCAAGTGGG
CGCCGACTTAGCAGCAGTGGACCAGCTCGCCTTGATCAAGTTCGCGGCGT
TTATCAGCATCAACCTGGCGGTGGTGAACGCGTTGCCTTTCCCGGGTTTG
GACGGGGGCCAGATGATTTTTGTGCTTCTGGAGGCTTTGCGCGGGAAACG
GTTGTCGCCTCAATTGGAGAATGGGATCAACGCTGTGGCAGTTCTGTTGC
TGGCCTCCCTGTCGCTGAGCCTGATTGCTGGAGACATCACTAGGGGAATG
TCTAGCCTGGACAAGGTCATCGAGGCCAACCCCTTGCTTGACTCCCCACT
CAAGTAGGCCGGACTCTGAATGAGAATTTTTGTGTCAACAAATGGGTGTG
TTtcatccttcttttttccaaCTCTTTTGACCAAAAAAATGTTAAGATAC
ACATGTGTGGAGGGCGTGTGAAAGttgagagcgagggagggagtttgAAT
GAGCTACTATCGTTCGTGTATTCCTCGCCTCGCTCTTTTTTAAAAGAACT
GTTTGAGTAGAGCGATGCCCACGCGCACGCATGCATGCCATAGCAAAAGA
TACAAAGAAAAACTTTGACACGGAGATATCTCGTGACGAGCACGTGCAAT
GCTGTGCCCACGTACGAAAGAATATCTCTGAACTCACATTTTGCGACGGA
TTTTGACGAATACTTCCT

Coding sequence (CDS) from alignment at CM002461.1:835070..837287+

>rna3625 ID=rna3625|Name=rna3625|organism=Nannochloropsis gaditana|type=CDS|length=1401bp|location=Sequence derived from alignment at CM002461.1:835070..837287+ (Nannochloropsis gaditana)
ATGCGGCGTCATTGCCACGTCTTTGCGGCTGCCACTGGACTTCTATGTTT
AAGCGGGAGCATATTGGCGTTTCGCCCCCCTGCTTTCCAAGCCGTGAGCC
GGACCAAGTCCACGCTTGCGCATGGTCTCGGAAGCAAGCTCTTGAGACCT
CGACTTCCCGCGAGGCACGACCGTCCCGTTAAAGCTGCCTTGGACCCGGA
GAGCATCTCGACCGCGGTCAATGTGGCTGCGGGTGCAAGCAACCCCCTCT
CGGGCATCACCAACAAcctgacctccctcctcgtcctggcAGTGATCGTG
GCAGTGCACGAAATGGGGCACTTCATCGGGGCCCGCTCCCAGGGCATCAA
AGTGCGGAACTTCAGTATTGGCTTTGGTCCTCGATTGTTGTCCTTCAAGG
AGGGGCcagaggacgacgacatTGAGTACACGCTGCGGGCGATCCCCATG
GGCGGCTTTgtgtcctttcccccccactaCGAGATCGACAACGACGGGGA
CATGATCCGGTACGAGGATAAGGACCTCCTGCAAAATCGCCCCCCCCTGC
AGCAAGCTATCGTCATCTCTGCCGGGGTGATCGCAAATATtctcttgtcc
ttctccctcctcctcggctctGTGGCCACCACCggcctccctcgacctca
GTTCAGCGATGGGCCCTACGTCATGCGCCTGGTCGAGAAGGACTGCCCGG
CCGCCCGAGCCGGCATCCAACCCGAAGATTTGATCCTGGCTGTGAATGGG
CACAAGGTGAGcggggacgagaaagggcTTAATGGTGCCGTTTCCCTCAT
CTCCCAGTCCAACGGCCAGCCCGTTGAGTTGCAGCTTCGGCGCAAAGGAG
TCGAACTGTTGAAAACGGTAACCCCTCAGTTGAATCCGGAAACGGGCCGC
AACAGCATCGGTGTCCAGATGGCGGCGCACATTGAAAAAGTGAAGCTGAT
CAAAGCCAAAGACCCTGCACAGGCCTTGGAGTACTCAGTTCAAGAGCTTG
GTGCCATGCTGCGGgaagcctcctcttccttgcgccgcttttcctccgcg
GGCATGGAGGGCTTGACAGGCCCATTGGGTATTGTGCAAGTGGGCGCCGA
CTTAGCAGCAGTGGACCAGCTCGCCTTGATCAAGTTCGCGGCGTTTATCA
GCATCAACCTGGCGGTGGTGAACGCGTTGCCTTTCCCGGGTTTGGACGGG
GGCCAGATGATTTTTGTGCTTCTGGAGGCTTTGCGCGGGAAACGGTTGTC
GCCTCAATTGGAGAATGGGATCAACGCTGTGGCAGTTCTGTTGCTGGCCT
CCCTGTCGCTGAGCCTGATTGCTGGAGACATCACTAGGGGAATGTCTAGC
CTGGACAAGGTCATCGAGGCCAACCCCTTGCTTGACTCCCCACTCAAGTA
G

Synonyms

Publications