rna3624, rna3624 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3624
Unique Name	rna3624
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	870
Alignment location	CM002461.1:832309..835087 -

Link to JBrowse

Properties


Property Name	Value
Product	Vacuolar sorting protein 9
Orig transcript id	gnl\|cribi\|Naga_100056g34.10475.mrna
Orig protein id	gnl\|cribi\|Naga_100056g34.10475
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:832309..835087 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g34	gene3491	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27062.1	cds3615	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3624	rna3624-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:832309..835087-
coding sequence from alignment at CM002461.1:832309..835087-

mRNA sequence

>rna3624 ID=rna3624|Name=rna3624|organism=Nannochloropsis gaditana|type=mRNA|length=870bp
ATGACCTACGTCGGTCAGCGAAAAGGCCTGGAGCTGATTGTGATCGGCGC
TCAAGCTGGTGCTTACAATGAGGTGGCCAAGCTATTGGACCGAGGACTGA
GCCTCCCGTCCTCCCTGCCGTCCCGATGGTTGTGGTTCGTCCTCGCTTTC
AACACCGGCCACTCCTGGGCCTACGGCGAGACTCTCATGCCCTCTCTACT
CCCATCCTGGCTGCATTGGTACTGGCCGGGGCGTCGGCTTGTGCAGTATC
TTGCCTACGTCTGCCTGCTCGGAGGGTCCATCACACCCAAGGGCCCAGGG
GAGCAGCTTCAGCGCCAAGTCGCGCATCTGGCCGGTCTGCATTTCGCGCT
CTTTCTCATTGTGGGACTGGGCTCCGGGTACGTGGCCATCCTCAAACAAT
GGGGCGTCCGCCCTTTCCTCCTTTCCGTCCTCCTGGTCGTTGTGAACGAC
ATCGGGGCCTACCTGGTGGGAGTGCCCCTGGGGAAGACCCCTCTGACTAA
GCTCTCCCCCAAGAAGAGCTGGGAGGGCTTCTGGGGGGCTGCAGTTCTGA
CCATGGCCAGTGCTCCGCTCCTCGTACGGCTCCTTCGAACCATGTTGGGG
CCCGCGCCCGACGACGTGCCCCGCGCGTTGGGGGGGCTGCTGTCCCTCTC
GGACTGGCAGGCGCTGATCCTGGCTGCCTTCGCCTCGTTCGGGGCACCTA
TAGGGGGCATTCTGGCATCCGCCGCCAAGCGGGCGACGGGGACGAAGGAT
TTCGGCGACAGCATACCCGGACACGGCGGGGTCATGGACCGTGTGGACTG
CCAGCTCTTCATGTCGGCCTTCAGCTACCTCTTCTTGTCTTGCTCCGCTT
CTCCCCGGGCGCGGGAATAG

protein sequence of rna3624

>rna3624-protein ID=rna3624-protein|Name=rna3624|organism=Nannochloropsis gaditana|type=polypeptide|length=714bp
MTTPSPSSSTTTRGRRLSSLTELMDAVGSLFPHPVQHMQSMQAPPSAVTR
YHSILKTENSRLLGQADKAKRALSALEKTSLTEKNQLLRTGGRKHLGLWR
HHTSLRRALLELEHEQWRQAATILQKQELIVLSWLREVDARKEKVKKGPR
GTGEQEREEPKSSAIMRPPAELLEADSGVKILKRRRFCLARLCDQAEKAM
GKVIGETGWAGAEGGEERRLRLLGLIEEAQALYLDDGDAVDVVHPVRDVT
GPESSGISSSTGAYTSRPLLVPPDSSSSPLPCRPSPATSVPPSTQSSVNV
PLLPSCSQPGPRQAHGVMGRRRQRVEAAFAFLLEDQRYREGRLLDRWLTL
LEESASQSNVSAASRTRGEGQGGLPGAVSALGRSLPTTTTAVSNGSGSPR
DTYLYTPRCIVAFINYFVHDRLLVPYALPPALRPALLGLMQALVFRRARR
ASSGYVKGGDQVFPELNKQWREQVQAARRLDATALGVPPPYLWGCPFPET
ARVLSEMALSMTPLEMTEALLRAVRCLHHEAGAAAVKAQREGRLQKLQRA
GGEGGGEGDREARTAESEPAHSLPADVLFPLLVYALVQSECPDIFSCLYV
LRHFASGNHVGEQAYYCTTLEAAVAHIFWLPVGEERRREGGSHVAAEDET
GGREGGLQEAVEEEGGMEEPVLEDLGPSFSVEEQERGLQFLDEWLAAEAA
MEETMDILEQDGWF

mRNA from alignment at CM002461.1:832309..835087-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3624 ID=rna3624|Name=rna3624|organism=Nannochloropsis gaditana|type=mRNA|length=2779bp|location=Sequence derived from alignment at CM002461.1:832309..835087- (Nannochloropsis gaditana)
CGAGATCGCTATTTGATAGCCACTCCACCTTTCCCTTTACACACCCAAAA
AAAAAGTGAACCAGCCATGGACCCTTTCCTGCACTTGTCCCGAATCCACA
CACAGGTCAGTACAGGATGTTTACCGGACTCATGGGAAGCATGATGGTTC
CTGCATAGATCTACGACGGTCAGGTGGCAATCTGCTCGCGACGAGAGGGG
CAGTGCATCGCCGGACCTCACTTTGTTCCACCTGCCCGTCACCTTTTGGA
GTCTCGCCCGTTTGCCTTCCTTCCAGAACGATGACGACCCCGTCACCGTC
TTCATCGACGACGACGCGAGGACGACGGCTTTCCTCCCTGACCGAGTTAA
TGGACGCCGTGGGCAGCCTGTTTCCCCATCCCGTCCAACACATGCAGTCA
ATGCAGGCTCCTCCCTCCGCGGTGACCCGTTACCACTCGATATTAAAAAC
AGAGAATTCTCGACTCCTAGGGCAAGCAGATAAAGCAAAAAGGGCTCTTT
CAGCACTTGAAAAAACATCTCTTACCGAGAAAAATCAACTTTTGAGGACG
GGGGGCCGGAAGCATCTCGGTTTGTGGCGCCACCATACCTCGCTGAGAAG
GGCCTTGCTGGAACTGGAGCACGAACAATGGAGACAAGCTGCGACAATTT
TACAGAAACAGGAATTGATAGTGCTGTCCTGGCTTCGCGAGGTCGATGCC
AGGAAGGAAAAGGTAAAAAAGGGACCAAGGGGAACAGGGGAACAAGAGAG
GGAGGAGCCAAAGTCCTCTGCCATCATGCGACCGCCAGCTGAGTTATTAG
AAGCCGATAGTGGCGTCAAAATATTGAAGAGACGGCGATTTTGCCTCGCA
CGCCTGTGCGACCAGGCAGAGAAAGCCATGGGTAAGGTGATAGGGGAGAC
AGGGTGGGCGGGTGCGGAGGGCGGGGAAGAACGGCGACTGAGGCTGTTGG
GCTTAATCGAGGAGGCCCAGGCGCTGTACTTGGACGATGGAGACGCCGTA
GACGTGGTGCATCCTGTGCGCGATGTCACCGGGCCGGAATCCTCTGGCAT
CTCATCCTCCACGGGGGCTTACACCTCGAGGCCCCTCCTGGTCCCCCCTG
ACTCCTCCTCCTCCCCGCTGCCTTGTCGCCCCTCTCCTGCGACCTCCGTG
CCCCCATCGACCCAATCCTCCGTCAACGTGCCCCTGCTGCCGAGCTGCAG
CCAGCCTGGACCCCGTCAGGCCCACGGCGTGATGGGCAGGCGGCGGCAGC
GCGTAGAGGCTGCTTTCGCCTTTCTCTTGGAGGATCAACGCTACCGGGAG
GGTCGACTCCTGGACAGATGGCTGACGTTGCTGGAAGAGAGCGCCAGCCA
GAGCAATGTCTCTGCTGCCTCTCGGACGCGAGGTGAGGGCCAAGGAGGGC
TCCCCGGTGCCGTCTCGGCGCTTGGCCGCTCCCTCCCCACCACCACGACT
GCGGTCAGCAACGGCAGCGGCAGCCCCCGGGACACGTACCTCTACACGCC
CCGCTGCATCGTTGCCTTCATCAACTACTTTGTGCACGACCGGCTCCTGG
TTCCCTATGCCCTTCCCCCCGCCCTCCGCCCCGCCCTCCTCGGGCTCATG
CAGGCCCTGGTGTTCCGCCGAGCCCGACGTGCGTCCTCCGGGTATGTGAA
AGGCGGCGACCAAGTCTTTCCCGAGCTCAACAAGCAATGGCGGGAGCAGG
TACAGGCAGCCCGCCGCCTGGACGCCACCGCGCTGGGCGTGCCCCCCCCC
TACCTGTGGGGGTGCCCCTTCCCGGAGACGGCCCGGGTTTTGAGCGAGAT
GGCGCTCTCTATGACGCCCTTGGAGATGACGGAAGCCCTTTTAAGAGCTG
TCAGGTGCTTGCACCACGAGGCAGGTGCTGCAGCGGTAAAGGCGCAGAGG
GAGGGGCGCCTTCAAAAATTGCAACGGGCAGGTGGAGAAGGAGGAGGGGA
GGGAGACCGGGAAGCCAGGACGGCCGAGTCAGAGCCCGCGCATTCCCTGC
CGGCGGATGTGCTCTTCCCTTTGCTCGTGTATGCCTTGGTGCAGTCCGAG
TGCCCGGATATTTTCTCCTGCCTCTACGTGCTGCGGCACTTCGCCTCCGG
AAATCACGTGGGAGAACAAGCCTACTATTGCACTACCCTGGAGGCGGCCG
TGGCTCATATTTTCTGGCTGCCCGTAGGGGAGGAAAGGAGGAGGGAAGGG
GGTAGCCACGTCGCCGCGGAGGACGAGACCGGGGGAAGGGAAGGAGGATT
GCAAGAGGCGGTGGAGGAGGAAGGAGGGATGGAGGAGCCAGTGCTTGAGG
ACTTGGGCCCGTCCTTCTCGGTGGAGGAGCAAGAGAGGGGCCTGCAGTTC
CTGGACGAGTGGTTGGCGGCAGAAGCGGCGATGGAGGAAACCATGGACAT
TTTGGAACAAGACGGATGGTTTTGAGGGATTGGAGTGGAATACTCGGAAA
GCCTTAATCATGGGCAGCTTGTACCGGCGGGGCTCACTCGAGGCAGTACT
TTCAGTTCGTTTCTTTTCCGCCCTCTCTTTGAGTTACCTGCAATCCCCAA
CACCACACACCGCCATTACTGTACATGCTCCCCAGAGTGCCTACCTTCCC
TCTCTCTACACTTTTCTCGTGCCTATTCCCGCGCCCGGGGAGAAGCGGAG
CAAGACAAGAAGAGGTAGCTGAAGGCCGACATGAAGAGCTGGCAGTCCAC
ACGGTCCATGACCCCGCCGTGTCCGGGTATGCTGTCGCCGAAATCCTTCG
TCCCCGTCGCCCGCTTGGCGGCGGATGCC

Coding sequence (CDS) from alignment at CM002461.1:832309..835087-

>rna3624 ID=rna3624|Name=rna3624|organism=Nannochloropsis gaditana|type=CDS|length=2145bp|location=Sequence derived from alignment at CM002461.1:832309..835087- (Nannochloropsis gaditana)
ATGACGACCCCGTCACCGTCTTCATCGACGACGACGCGAGGACGACGGCT
TTCCTCCCTGACCGAGTTAATGGACGCCGTGGGCAGCCTGTTTCCCCATC
CCGTCCAACACATGCAGTCAATGCAGGCTCCTCCCTCCGCGGTGACCCGT
TACCACTCGATATTAAAAACAGAGAATTCTCGACTCCTAGGGCAAGCAGA
TAAAGCAAAAAGGGCTCTTTCAGCACTTGAAAAAACATCTCTTACCGAGA
AAAATCAACTTTTGAGGACGGGGGGCCGGAAGCATCTCGGTTTGTGGCGC
CACCATACCTCGCTGAGAAGGGCCTTGCTGGAACTGGAGCACGAACAATG
GAGACAAGCTGCGACAATTTTACAGAAACAGGAATTGATAGTGCTGTCCT
GGCTTCGCGAGGTCGATGCCAGGAAGGAAAAGGTAAAAAAGGGACCAAGG
GGAACAGGGGAACAAGAGAGGGAGGAGCCAAAGTCCTCTGCCATCATGCG
ACCGCCAGCTGAGTTATTAGAAGCCGATAGTGGCGTCAAAATATTGAAGA
GACGGCGATTTTGCCTCGCACGCCTGTGCGACCAGGCAGAGAAAGCCATG
GGTAAGGTGATAGGGGAGACAGGGTGGGCGGGTGCGGAGGGCGGGGAAGA
ACGGCGACTGAGGCTGTTGGGCTTAATCGAGGAGGCCCAGGCGCTGTACT
TGGACGATGGAGACGCCGTAGACGTGGTGCATCCTGTGCGCGATGTCACC
GGGCCGGAATCCTCTGGCATCTCATCCTCCACGGGGGCTTACACCTCGAG
GCCCCTCCTGGTCCCCCCTGACTCCTCCTCCTCCCCGCTGCCTTGTCGCC
CCTCTCCTGCGACCTCCGTGCCCCCATCGACCCAATCCTCCGTCAACGTG
CCCCTGCTGCCGAGCTGCAGCCAGCCTGGACCCCGTCAGGCCCACGGCGT
GATGGGCAGGCGGCGGCAGCGCGTAGAGGCTGCTTTCGCCTTTCTCTTGG
AGGATCAACGCTACCGGGAGGGTCGACTCCTGGACAGATGGCTGACGTTG
CTGGAAGAGAGCGCCAGCCAGAGCAATGTCTCTGCTGCCTCTCGGACGCG
AGGTGAGGGCCAAGGAGGGCTCCCCGGTGCCGTCTCGGCGCTTGGCCGCT
CCCTCCCCACCACCACGACTGCGGTCAGCAACGGCAGCGGCAGCCCCCGG
GACACGTACCTCTACACGCCCCGCTGCATCGTTGCCTTCATCAACTACTT
TGTGCACGACCGGCTCCTGGTTCCCTATGCCCTTCCCCCCGCCCTCCGCC
CCGCCCTCCTCGGGCTCATGCAGGCCCTGGTGTTCCGCCGAGCCCGACGT
GCGTCCTCCGGGTATGTGAAAGGCGGCGACCAAGTCTTTCCCGAGCTCAA
CAAGCAATGGCGGGAGCAGGTACAGGCAGCCCGCCGCCTGGACGCCACCG
CGCTGGGCGTGCCCCCCCCCTACCTGTGGGGGTGCCCCTTCCCGGAGACG
GCCCGGGTTTTGAGCGAGATGGCGCTCTCTATGACGCCCTTGGAGATGAC
GGAAGCCCTTTTAAGAGCTGTCAGGTGCTTGCACCACGAGGCAGGTGCTG
CAGCGGTAAAGGCGCAGAGGGAGGGGCGCCTTCAAAAATTGCAACGGGCA
GGTGGAGAAGGAGGAGGGGAGGGAGACCGGGAAGCCAGGACGGCCGAGTC
AGAGCCCGCGCATTCCCTGCCGGCGGATGTGCTCTTCCCTTTGCTCGTGT
ATGCCTTGGTGCAGTCCGAGTGCCCGGATATTTTCTCCTGCCTCTACGTG
CTGCGGCACTTCGCCTCCGGAAATCACGTGGGAGAACAAGCCTACTATTG
CACTACCCTGGAGGCGGCCGTGGCTCATATTTTCTGGCTGCCCGTAGGGG
AGGAAAGGAGGAGGGAAGGGGGTAGCCACGTCGCCGCGGAGGACGAGACC
GGGGGAAGGGAAGGAGGATTGCAAGAGGCGGTGGAGGAGGAAGGAGGGAT
GGAGGAGCCAGTGCTTGAGGACTTGGGCCCGTCCTTCTCGGTGGAGGAGC
AAGAGAGGGGCCTGCAGTTCCTGGACGAGTGGTTGGCGGCAGAAGCGGCG
ATGGAGGAAACCATGGACATTTTGGAACAAGACGGATGGTTTTGA

Synonyms

Publications