rna3622, rna3622 (mRNA) Nannochloropsis gaditana

Overview
Namerna3622
Unique Namerna3622
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1939
Alignment locationCM002461.1:829764..831687 -

Link to JBrowse

Properties
Property NameValue
Productdihydro-8-oxoguanine triphosphatase
Orig transcript idgnl|cribi|Naga_100056g36.10472.mrna
Orig protein idgnl|cribi|Naga_100056g36.10472
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:829764..831687 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100056g36gene3489Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27059.1cds3613Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3622rna3622-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3622 ID=rna3622|Name=rna3622|organism=Nannochloropsis gaditana|type=mRNA|length=1939bp
TGCTGAAGAGTATCTCATAAGCCTGCCTCCACCCGTCATCGTATCGTGTC
TGATGCTTCTTCTCACTTGTCCTTGAATACGTACTCACCATAACAGGTCG
AGGTTTGGCAGCGGCCTTGAAGAGGCAAGCGCAGTCAAATCAATCAGTAG
AAGTTCGACGCCGGAGTAGCGGCAGGTAGCTATTCGCTCCTGAAAAGGAC
GGGGTGCCGTTACTTCCCTCAGGTTTTTCGAGATCATGTCTGTCCCAGAC
CCGTCCACGCTGACGCCCTTGACCCCTGAGGTCATATCCAAGCAAGCTAC
AATTAATATCGGGACAATCGGACACGTCGCTCACGGGAAGTCGACCGTGG
TGAAGGCGATCAGTGGTGTGAACACGGTCAGGACCAAGCCCGAGCTGGAG
CGGAACATCACCATCAAGCTGGGGTATGCCAACGCTAAGATCTATAAATG
CGATCCGGCGGAGGAGGGCGTGCCTGGGAACTACCGGGCCAAGGGCTCCT
CGGCCCCGGACGTTTTCGAGGAGGACGGCAAGACGTGGAGGCTGCAACGG
CACGTTTCGTTTGTGGACTGCCCCGGCCATGATATTTTGATGGCCACCAT
GTTGAACGGCGCGGCCGTCATGGACGCGGCATTGCTTTTGATCGCGGGGA
ACGAAGCCTGTCCCCAGCCCCAGACGTCGGAGCACCTGGCGGCCGTGGAG
ATCATGCGCTTGGCGAACATCATCATCCTCCAGAACAAGGTGGACCTGGT
CAAGCCCGCCGACGCCTCCATGCAACACGATCAGATCCGAAAATTTGTCG
CCGGAACCGTCGCGGACGCATCGCCCATCATTCCGATCTCGGCCGTTAAA
AAGTTCAACATCGACATCGTGTGCGAATACCTCGTGAACCGCATCCCCGT
CCCCCCCCGGGACTTTACCTCCTCCCCCCGCCTGATCGTCATTCGTTCCT
TCGACGTGAACAAGCCAGGGGAGCTGGTGGAGGATTTGAAAGGGGGGGTG
GCGGGCGGCAGTATCTTGCAAGGAGTGCTGCGGGTAGGAGACCAAATCGA
GGTGCGTCCGGGCATCGTCACCAAGGACGCGAAAGGCAACGTCAAGTGCG
TCCCGATCTTCAGCCAGATCACAAGCTTGTTCGCGGAGCACAACGAGCTG
GACTTCGCGGTGCCCGGGGGTTTGATCGGGGTAGGAACCCGGATTGACCC
CACCCTGACACGGGCCGATCGTCTGGTGGGACAAGTTCTGGGCCTGCGAG
GGCAACTACCGGATGTGTACACGGAGGTGGAGATCTCTTACTATTTGTTG
CGTCGGCTTCTGGGGGTCAAGACGCAGGACGGAGGAAAACAAGCGAAGGT
GCAGAAACTGGCAGCGAAGGAGATTTTGATGGTGAACATTGGGAGCACGG
CCACGGGCGGGAAGGTATTAGGGCTGCGGGAGGACGCGGCGCGGAGGGAG
GACTATGCGAAAATTCTGTTGACGCAACCAGTGTGTACGCAGGAGGGGGA
GAAGATCGCCTTGAGTCGAAGAGTCGACAAGCATTGGCGCTTGATCGGGT
GGGGACAGATCCGGCGGGGCACGACCATCAACGTGGCGACGGCGGGAGAA
GGAAAGGAAGATCCCGCGGTTTAGTCGGGGATGGGAAGGTCACAATAGAG
AAGAGGATTTGCTTGCCCTGGCAATGAGGGAGAGGACATGTGTAGGCGTG
GATAAGAAGGCAGGGGCGAGGCTACAGGGGGGCAGAGAGGGCCCGCCCCA
TTGGTGCATCTGTCGCATTTACAAGCATGAAGGATAAGTGTGAGGCAGAA
GGCATGCTAAAGATAGGGGTGGCGGTCGCAATCAAATCAAAGGGGGACAA
GACTCCCGGAACTTCCCACACAGGGCCCCGGCCTCATCAACGCTTGCTTC
CTGTAAGACTCCCCTCGAGCCAGGGGCCGCATGTGTACC
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protein sequence of rna3622

>rna3622-protein ID=rna3622-protein|Name=rna3622|organism=Nannochloropsis gaditana|type=polypeptide|length=274bp
MLSAADIQYVAYIVPQYPRRSYLKTQGMRDRTIFSLVPCLFSSATAAVAV
ISAASAVSACGSSVALFHNKASPRQSFVYYSPLPTKSTFATTLKAERRMK
ASSSVPQPTLKTKLLTLLFVRRANPTTNVKEVLLGMKKRGFGQGKWNGFG
GKVETNETIKAAALRELEEESCLKASDAELRGKITFTFLTIPEVLKVHVF
EALGPIEGEPQETEEMKPQWYAESEIPYEKMWADDKYWLPLFLEGRRFKA
LFEFDDESTLLRYDLGTVPEGEEL
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mRNA from alignment at CM002461.1:829764..831687-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3622 ID=rna3622|Name=rna3622|organism=Nannochloropsis gaditana|type=mRNA|length=1924bp|location=Sequence derived from alignment at CM002461.1:829764..831687- (Nannochloropsis gaditana)
CGGTCCAATAGCTTGGCCACCTCATTGTAAGCACCAGCTTGAGCGCCGAT
CACAATCAGCTCCAGGCCTTTTCGCTGACCGACGTAGGTCATGGCAGCAG
TCAGCCCCAAAAGCGTCACCGTGCTGGCGACGCGCGTGCCCCAAGAACCC
TTCCGACTTGAGATACGACCCAGGACGCCGGGGTCCTGAGGAGGTGCTCT
CAAGGCGTTCGACGGGGCGCCAAACAAGGCCCCGCCTCGGTGAAGGAGAT
CTTTGTGGGGAGAAACTTTCAATGGAGAGGGTGCGACGAGGCACAGGAAG
GAAAGGGAAAGGATTAACTGGCATATCACCCGCCCCGCCATTCCACCTGT
CCGTTTGCGGTGGTAGTCTTGTGAGCCTAGAAAAGTTGTCACGCATCAAA
AAGAGCTTCTCAGTTTTTTTGGAAAGTGTTCAAGAACGTGACAGCATTAT
TCGATCGAAAGCATGACGAGGACACACGATGGTCACCTAGCCGGTGATCA
AACGACACACGCCGGTCGTGGAGGAGGCAGGAGGTTGGACTACCTGTTGC
CAACCTTGCGCCCTGCTATGCGATTGTTGAGCCACGGGCATGATCGATGG
GGGTATTCATGACCGCTTATACTTTGCTTGAATGCCCAGGCGTTGAAGAC
GGAAAAGATGACGGACAACCACCAATGATGGTGAATGGCATTACGATCTC
TTTGTCTTATCGCCCATGTTGAGCGCTGCTGATATTCAATACGTTGCATA
TATCGTACCTCAATACCCAAGGCGTTCATATTTAAAAACACAGGGCATGC
GGGATAGAACAATCTTCTCTTTGGTCCCGTGTCTTTTTTCATCTGCTACC
GCCGCAGTTGCTGTTATTTCTGCTGCCTCCGCTGTTTCTGCCTGTGGAAG
CTCCGTGGCCCTTTTCCACAACAAAGCGTCACCACGGCAGTCTTTCGTGT
ATTACAGTCCTTTGCCGACCAAAAGTACCTTTGCCACGACGTTGAAAGCA
GAAAGAAGAATGAAAGCAAGCTCTAGTGTCCCTCAGCCGACTTTAAAGAC
CAAGCTTTTGACCTTGCTCTTCGTGAGGCGGGCAAACCCAACAACGAATG
TCAAAGAAGTACTCCTCGGAATGAAAAAGAGAGGATTCGGGCAAGGAAAA
TGGAATGGTTTTGGAGGCAAGGTGGAGACTAATGAGACGATTAAAGCGGC
TGCTTTGCGTGAGCTGGAGGAGGAATCATGCTTGAAGGCCTCGGATGCAG
AACTGAGGGGAAAAATCACCTTCACATTTTTGACCATTCCCGAGGTGCTG
AAGGTCCACGTTTTTGAGGCACTGGGCCCGATCGAAGGGGAGCCTCAGGA
GACAGAAGAAATGAAACCACAATGGTACGCCGAAAGCGAGATCCCGTATG
AGAAAATGTGGGCGGACGATAAATATTGGTTGCCCTTGTTCCTCGAAGGG
AGGCGGTTCAAGGCTCTCTTTGAGTTCGACGACGAAAGCACTTTGTTACG
GTACGATCTAGGTACGGTGCCTGAAGGAGAGGAGTTGTGACAATGAGGTT
GGTGGAGACAGCAGAGTGGAGCACGGTAGGAGTAGTACTTATGCCTGGCA
TGTGGAAGAGCAACGGTGTGGAACGGGCGCGTGGGGCAACTCCCCTAATG
GGACCACGCACTCCGAAAGAGCGATGATAAAATAAAATGTTTCGAGTCAT
CGAGGTACACATGCGGCCCCTGGCTCGAGGGGAGTCTTACAGGAAGCAAG
CGTTGATGAGGCCGGGGCCCTGTGTGGGAAGTTCCGGGAGTCTTGTCCCC
CTTTGATTTGATTGCGACCGCCACCCCTATCTTTAGCATGCCTTCTGCCT
CACACTTATCCTTCATGCTTGTAAATGCGACAGATGCACCAATGGGGCGG
GCCCTCTCTGCCCCCCTGTAGCCT
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Coding sequence (CDS) from alignment at CM002461.1:829764..831687-

>rna3622 ID=rna3622|Name=rna3622|organism=Nannochloropsis gaditana|type=CDS|length=825bp|location=Sequence derived from alignment at CM002461.1:829764..831687- (Nannochloropsis gaditana)
ATGTTGAGCGCTGCTGATATTCAATACGTTGCATATATCGTACCTCAATA
CCCAAGGCGTTCATATTTAAAAACACAGGGCATGCGGGATAGAACAATCT
TCTCTTTGGTCCCGTGTCTTTTTTCATCTGCTACCGCCGCAGTTGCTGTT
ATTTCTGCTGCCTCCGCTGTTTCTGCCTGTGGAAGCTCCGTGGCCCTTTT
CCACAACAAAGCGTCACCACGGCAGTCTTTCGTGTATTACAGTCCTTTGC
CGACCAAAAGTACCTTTGCCACGACGTTGAAAGCAGAAAGAAGAATGAAA
GCAAGCTCTAGTGTCCCTCAGCCGACTTTAAAGACCAAGCTTTTGACCTT
GCTCTTCGTGAGGCGGGCAAACCCAACAACGAATGTCAAAGAAGTACTCC
TCGGAATGAAAAAGAGAGGATTCGGGCAAGGAAAATGGAATGGTTTTGGA
GGCAAGGTGGAGACTAATGAGACGATTAAAGCGGCTGCTTTGCGTGAGCT
GGAGGAGGAATCATGCTTGAAGGCCTCGGATGCAGAACTGAGGGGAAAAA
TCACCTTCACATTTTTGACCATTCCCGAGGTGCTGAAGGTCCACGTTTTT
GAGGCACTGGGCCCGATCGAAGGGGAGCCTCAGGAGACAGAAGAAATGAA
ACCACAATGGTACGCCGAAAGCGAGATCCCGTATGAGAAAATGTGGGCGG
ACGATAAATATTGGTTGCCCTTGTTCCTCGAAGGGAGGCGGTTCAAGGCT
CTCTTTGAGTTCGACGACGAAAGCACTTTGTTACGGTACGATCTAGGTAC
GGTGCCTGAAGGAGAGGAGTTGTGA
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Synonyms
Publications