rna3617, rna3617 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3617
Unique Name	rna3617
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1097
Alignment location	CM002461.1:819548..821243 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100056g41.10461.mrna
Orig protein id	gnl\|cribi\|Naga_100056g41.10461
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:819548..821243 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100056g41	gene3484	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3617	rna3617-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27048.1	cds3608	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:819548..821243-
coding sequence from alignment at CM002461.1:819548..821243-

mRNA sequence

>rna3617 ID=rna3617|Name=rna3617|organism=Nannochloropsis gaditana|type=mRNA|length=1097bp
GCCTTTGTCCTGTATTTGTGCCCACCGTGAGCGCGTTGGGGCGTGCGTGG
CCGTATCGCCGGCATCGTGTCGGACCCCGATCCTGCTAGCCAGGCTCTGT
GGCCCTGTGACCGAGTCCTTTCCGCCGTGTTCCAAGAAGTCCGCGCTGTC
TTGCTCAGTGCTTGTGTGTCTGTGTTGTTGCTAGTTGTGTCTTTAGCAGA
CGCTGACATTCTTTCTTTACCTGCAATCTACAGATCACGCATTGTAAAGC
TGAAGCATGATTGCCCAGCCTGCTCGGCTCTTGTTCTGCGTGGCCCTCCC
GGCCCTTGCCACCGCCTTCCTGGCCCGTGCTCCCACCACAGTACCTCACA
CTCACTCGGTGAGGAAAGGGCGTACTGTTGTTATGGAGTCTATCTCGGAG
TTCCTCAAGTTTGATGCGAAACTCGGCGAGTTGGAGGTGACCAAAGCGGG
AGTCTCTGCTCCATTCGGGTTCTTCGATCCCTTGAACTTTTACGGAGGCA
AAACCATTCGCCAGAAGAAAAAGCTGCGCGAGTCTGAACTCAAACACGGT
CGCGTTGCTATGATGGCGGTGCTGGGCATTTTCGTCCAAGAACTCTGGCA
TCCTCTTCTGGCAGGTGATGATTTCGAAACCGCGCTCAGCCAATACTACG
GCGTGACGGAGTTTATTCCCGACTTCGGCGCGGGGGCCCTCTTTGTCCTT
TCTCTTTTTGAGTTCAAAAGCATCGCTATGGGATGGGATCCCGTCGAGGA
GACTCTCAAAGAGCCAAAAATTGCCGGTATGCGTGATGATTATGTGGCGG
GAGACTTACAGTACGATCCTCTGGGCTTCTGTCCCGACGATGACGAAGCC
TTTGTGCGCATGCGCACTAAGGAGCTCAACAACGGGCGTATGGCCATGAT
CGCCGCCATTGGCATCATCGGACAGGAGCTGGCCACGGGCGTGCCTGTTG
TCAAGTCGCTCTTTGGGTAAACCTGTGAATGTTTCTTGATCAGCGCCAGT
CTTGGTACTCCTCAACGCGCACTCGATCTCACGGCGATCCATTCCATTTT
GAAATATTTGTTACCTTTTAAATCCAAAACCAAGTCGCGACTGGACT

protein sequence of rna3617

>rna3617-protein ID=rna3617-protein|Name=rna3617|organism=Nannochloropsis gaditana|type=polypeptide|length=408bp
MEKFTKWADKGTGINPFLPQRRAASSLPSKVASGLLAIVLIAVRLPLILL
TLTWFLALSLLTKPWFDILTGALFTTYAYLDEGPSKPMTLSPQHTGFFLL
VLGSLTALSVPIRRVFSFLTLRPPVYLLLSILGVSYREQHANLRKLGLRP
PGHRPHDSRIGRTIQAGDILLSNHTSPLEVLFFISRFLPAFSALAVAPVA
QGRLLTPLQAWWRAGLVPPKAFETGTGQALSSLAAEAKRQGQAVVVFPET
ARSNGDGVLVFQRGVLDGTDAKEAKGGKLTGGERGGGVNVHIFGFSAPKG
EVMPTHTVGSVFGFYLQLLSRWRTTVNVSYVGAPDLLLQPTSAKGSGGSS
RTPVYSSEELRSLLANMLGRPKLNLGYEDFCSFRKYYAAIRAGDEERAAA
LARAREKM

mRNA from alignment at CM002461.1:819548..821243-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3617 ID=rna3617|Name=rna3617|organism=Nannochloropsis gaditana|type=mRNA|length=1696bp|location=Sequence derived from alignment at CM002461.1:819548..821243- (Nannochloropsis gaditana)
CTTCCGCCGGGTTTCAAGACTTACACAGCACTGTGGCAGGAGCGAGAACA
CAGCAATATACACAAAGAAATTTCGAAGCAACCGCGGATAATCCCTCAAT
GGAGGTAAGTGACTGCGCTCAGGAGACATACGCGTTGCTATTTTTTTCAT
CTTTTCTCCTTCATTCCTTCCTCCTCCTCCAATTCCAAAAATCACATGAA
ATGGACAGAAATTTACCAAGTGGGCCGACAAGGGCACGGGAATAAACCCA
TTTTTGCCCCAACGTCGCGCTGCCTCCTCCTTACCGTCCAAGGTGGCATC
CGGCCTCCTAGCCATTGTCCTCATCGCCGTGCGGCTGCCTTTGATCCTGC
TCACTCTGACGTGGTTTTTGGCCTTGTCCTTGCTTACCAAGCCGTGGTTC
GATATTTTGACAGGCGCGCTTTTCACGACATACGCATACCTAGATGAAGG
GCCCTCGAAACCCATGACCCTAAGCCCCCAGCACACCGGCTTCTTTTTGC
TCGTCCTCGGCTCTCTCACCGCCCTGTCTGTGCCCATCCGTCGTGTTTTC
TCCTTCCTGACCCTGCGCCCTCCGGTGTACCTCCTCCTCAGCATCCTCGG
CGTCTCGTATCGGGAACAGCACGCGAACCTCCGGAAACTCGGTCTGCGGC
CTCCAGGGCACAGGCCCCACGACTCCCGCATCGGCCGCACCATCCAAGCC
GGAGATATCCTACTGAGCAACCACACGTCCCCTCTGGAGGTGCTCTTTTT
CATCAGCCGCTTCCTACCTGCCTTCTCCGCCTTGGCCGTCGCCCCGGTGG
CCCAGGGCCGCCTTTTGACGCCGCTTCAGGCATGGTGGAGGGCCGGGCTC
GTCCCTCCCAAAGCCTTTGAGACAGGGACCGGCCAGGCTCTGTCGAGTCT
CGCCGCGGAGGCCAAGCGCCAAGGACAAGCCGTTGTGGTCTTCCCCGAGA
CGGCTCGATCCAACGGGGACGGCGTCCTCGTCTTTCAAAGAGGGGTGCTG
GATGGCACCGACGCCAAGGAGGCGAAGGGAGGGAAACTAACAGGAGGAGA
GAGGGGTGGGGGCGTAAATGTGCATATCTTCGGCTTCAGGTGCGATTTGG
CAGACGTACGTGGTGAGGAGGCTTAGAGGCAAAATCGTCTAATGCTCTTC
TTCCTCTTCCCTCCCTGCCCCCCTTCTCCCCGTCCTCCTAGTGCGCCTAA
AGGGGAAGTTATGCCCACACATACAGTGGGTAGCGTCTTTGGTTTTTATC
TGCAGCTCTTGAGCCGTTGGCGGACGACCGTGAATGTCTCGTACGTCGGG
GCCCCCGACTTGCTCCTGCAACCCACTTCAGCCAAAGGGAGTGGTGGCAG
CAGCCGGACACCTGTGTACAGCAGTGAAGAGTTGCGTAGTCTTCTTGCCA
ACATGCTGGGTCGACCCAAACTTAATCTTGGCTACGAGGATTTCTGCAGC
TTCAGAAAGTATTACGCGGCGATTCGCGCGGGTGATGAGGAGAGGGCAGC
GGCCTTGGCGCGTGCGCGTGAGAAAATGTAGGCATCGTAAAAATCGTACA
CAAAGAATTTGGAGCCGTGTAAAGCGCACCGTGAAAGTACAAAGAGCTTG
AACGTACTTGAAAGATCAAAAATCGATGCTGGGAGGTGCTTTGAAGTTTG
CCAAACGTCTCGCCACTCGGGCTTTGAGTTGGAGGCCGCCTATCGC

Coding sequence (CDS) from alignment at CM002461.1:819548..821243-

>rna3617 ID=rna3617|Name=rna3617|organism=Nannochloropsis gaditana|type=CDS|length=3681bp|location=Sequence derived from alignment at CM002461.1:819548..821243- (Nannochloropsis gaditana)
TGCGCCTAAAGGGGAAGTTATGCCCACACATACAGTGGGTAGCGTCTTTG
GTTTTTATCTGCAGCTCTTGAGCCGTTGGCGGACGACCGTGAATGTCTCG
TACGTCGGGGCCCCCGACTTGCTCCTGCAACCCACTTCAGCCAAAGGGAG
TGGTGGCAGCAGCCGGACACCTGTGTACAGCAGTGAAGAGTTGCGTAGTC
TTCTTGCCAACATGCTGGGTCGACCCAAACTTAATCTTGGCTACGAGGAT
TTCTGCAGCTTCAGAAAGTATTACGCGGCGATTCGCGCGGGTGATGAGGA
GAGGGCAGCGGCCTTGGCGCGTGCGCGTGAGAAAATGTAGAAATTTACCA
AGTGGGCCGACAAGGGCACGGGAATAAACCCATTTTTGCCCCAACGTCGC
GCTGCCTCCTCCTTACCGTCCAAGGTGGCATCCGGCCTCCTAGCCATTGT
CCTCATCGCCGTGCGGCTGCCTTTGATCCTGCTCACTCTGACGTGGTTTT
TGGCCTTGTCCTTGCTTACCAAGCCGTGGTTCGATATTTTGACAGGCGCG
CTTTTCACGACATACGCATACCTAGATGAAGGGCCCTCGAAACCCATGAC
CCTAAGCCCCCAGCACACCGGCTTCTTTTTGCTCGTCCTCGGCTCTCTCA
CCGCCCTGTCTGTGCCCATCCGTCGTGTTTTCTCCTTCCTGACCCTGCGC
CCTCCGGTGTACCTCCTCCTCAGCATCCTCGGCGTCTCGTATCGGGAACA
GCACGCGAACCTCCGGAAACTCGGTCTGCGGCCTCCAGGGCACAGGCCCC
ACGACTCCCGCATCGGCCGCACCATCCAAGCCGGAGATATCCTACTGAGC
AACCACACGTCCCCTCTGGAGGTGCTCTTTTTCATCAGCCGCTTCCTACC
TGCCTTCTCCGCCTTGGCCGTCGCCCCGGTGGCCCAGGGCCGCCTTTTGA
CGCCGCTTCAGGCATGGTGGAGGGCCGGGCTCGTCCCTCCCAAAGCCTTT
GAGACAGGGACCGGCCAGGCTCTGTCGAGTCTCGCCGCGGAGGCCAAGCG
CCAAGGACAAGCCGTTGTGGTCTTCCCCGAGACGGCTCGATCCAACGGGG
ACGGCGTCCTCGTCTTTCAAAGAGGGGTGCTGGATGGCACCGACGCCAAG
GAGGCGAAGGGAGGGAAACTAACAGGAGGAGAGAGGGGTGGGGGCGTAAA
TGTGCATATCTTCGGCTTCAGATGGAGTGCGCCTAAAGGGGAAGTTATGC
CCACACATACAGTGGGTAGCGTCTTTGGTTTTTATCTGCAGCTCTTGAGC
CGTTGGCGGACGACCGTGAATGTCTCGTACGTCGGGGCCCCCGACTTGCT
CCTGCAACCCACTTCAGCCAAAGGGAGTGGTGGCAGCAGCCGGACACCTG
TGTACAGCAGTGAAGAGTTGCGTAGTCTTCTTGCCAACATGCTGGGTCGA
CCCAAACTTAATCTTGGCTACGAGGATTTCTGCAGCTTCAGAAAGTATTA
CGCGGCGATTCGCGCGGGTGATGAGGAGAGGGCAGCGGCCTTGGCGCGTG
CGCGTGAGAAAATGTAGAAATTTACCAAGTGGGCCGACAAGGGCACGGGA
ATAAACCCATTTTTGCCCCAACGTCGCGCTGCCTCCTCCTTACCGTCCAA
GGTGGCATCCGGCCTCCTAGCCATTGTCCTCATCGCCGTGCGGCTGCCTT
TGATCCTGCTCACTCTGACGTGGTTTTTGGCCTTGTCCTTGCTTACCAAG
CCGTGGTTCGATATTTTGACAGGCGCGCTTTTCACGACATACGCATACCT
AGATGAAGGGCCCTCGAAACCCATGACCCTAAGCCCCCAGCACACCGGCT
TCTTTTTGCTCGTCCTCGGCTCTCTCACCGCCCTGTCTGTGCCCATCCGT
CGTGTTTTCTCCTTCCTGACCCTGCGCCCTCCGGTGTACCTCCTCCTCAG
CATCCTCGGCGTCTCGTATCGGGAACAGCACGCGAACCTCCGGAAACTCG
GTCTGCGGCCTCCAGGGCACAGGCCCCACGACTCCCGCATCGGCCGCACC
ATCCAAGCCGGAGATATCCTACTGAGCAACCACACGTCCCCTCTGGAGGT
GCTCTTTTTCATCAGCCGCTTCCTACCTGCCTTCTCCGCCTTGGCCGTCG
CCCCGGTGGCCCAGGGCCGCCTTTTGACGCCGCTTCAGGCATGGTGGAGG
GCCGGGCTCGTCCCTCCCAAAGCCTTTGAGACAGGGACCGGCCAGGCTCT
GTCGAGTCTCGCCGCGGAGGCCAAGCGCCAAGGACAAGCCGTTGTGGTCT
TCCCCGAGACGGCTCGATCCAACGGGGACGGCGTCCTCGTCTTTCAAAGA
GGGGTGCTGGATGGCACCGACGCCAAGGAGGCGAAGGGAGGGAAACTAAC
AGGAGGAGAGAGGGGTGGGGGCGTAAATGTGCATATCTTCGGCTTCAGAT
GGAGTGCGCCTAAAGGGGAAGTTATGCCCACACATACAGTGGGTAGCGTC
TTTGGTTTTTATCTGCAGCTCTTGAGCCGTTGGCGGACGACCGTGAATGT
CTCGTACGTCGGGGCCCCCGACTTGCTCCTGCAACCCACTTCAGCCAAAG
GGAGTGGTGGCAGCAGCCGGACACCTGTGTACAGCAGTGAAGAGTTGCGT
AGTCTTCTTGCCAACATGCTGGGTCGACCCAAACTTAATCTTGGCTACGA
GGATTTCTGCAGCTTCAGAAAGTATTACGCGGCGATTCGCGCGGGTGATG
AGGAGAGGGCAGCGGCCTTGGCGCGTGCGCGTGAGAAAATGTAGAAATTT
ACCAAGTGGGCCGACAAGGGCACGGGAATAAACCCATTTTTGCCCCAACG
TCGCGCTGCCTCCTCCTTACCGTCCAAGGTGGCATCCGGCCTCCTAGCCA
TTGTCCTCATCGCCGTGCGGCTGCCTTTGATCCTGCTCACTCTGACGTGG
TTTTTGGCCTTGTCCTTGCTTACCAAGCCGTGGTTCGATATTTTGACAGG
CGCGCTTTTCACGACATACGCATACCTAGATGAAGGGCCCTCGAAACCCA
TGACCCTAAGCCCCCAGCACACCGGCTTCTTTTTGCTCGTCCTCGGCTCT
CTCACCGCCCTGTCTGTGCCCATCCGTCGTGTTTTCTCCTTCCTGACCCT
GCGCCCTCCGGTGTACCTCCTCCTCAGCATCCTCGGCGTCTCGTATCGGG
AACAGCACGCGAACCTCCGGAAACTCGGTCTGCGGCCTCCAGGGCACAGG
CCCCACGACTCCCGCATCGGCCGCACCATCCAAGCCGGAGATATCCTACT
GAGCAACCACACGTCCCCTCTGGAGGTGCTCTTTTTCATCAGCCGCTTCC
TACCTGCCTTCTCCGCCTTGGCCGTCGCCCCGGTGGCCCAGGGCCGCCTT
TTGACGCCGCTTCAGGCATGGTGGAGGGCCGGGCTCGTCCCTCCCAAAGC
CTTTGAGACAGGGACCGGCCAGGCTCTGTCGAGTCTCGCCGCGGAGGCCA
AGCGCCAAGGACAAGCCGTTGTGGTCTTCCCCGAGACGGCTCGATCCAAC
GGGGACGGCGTCCTCGTCTTTCAAAGAGGGGTGCTGGATGGCACCGACGC
CAAGGAGGCGAAGGGAGGGAAACTAACAGGAGGAGAGAGGGGTGGGGGCG
TAAATGTGCATATCTTCGGCTTCAGATGGAG

Synonyms

Publications