rna3616, rna3616 (mRNA) Nannochloropsis gaditana

Overview
Namerna3616
Unique Namerna3616
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1455
Alignment locationCM002461.1:817924..819423 -

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Properties
Property NameValue
Productlight harvesting complex protein
Orig transcript idgnl|cribi|Naga_100056g42.10454.mrna
Orig protein idgnl|cribi|Naga_100056g42.10454
GeneLHCP3
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:817924..819423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LHCP3gene3483Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3616rna3616-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27041.1cds3607Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3616 ID=rna3616|Name=rna3616|organism=Nannochloropsis gaditana|type=mRNA|length=1455bp
AGACAAAGCGAGAGCCCGGTCGCTCTTCCTTTTGAGGAACTATTTCATAA
TTTCTGAGGTCGTCCGTGCCACGTCCGCCGTGACGGGGTGTCTCGTCGCA
CAGGCATATGTGTTGGCGCATTAGCCTGTTGGAGGGTCTTCCACGCTGGC
GTTCCATGCTTGTGGCACGATGTATACTTCCAAGTCTGGAAGTCTGAAAT
GGCGAACCCTCACTTCATATTCCATGTTCATTCTTCCCGCGCCCACACGC
CTCCTACCTTGCAAGCAGGACTTTTGTCACGAAAACGTCATACTATTGAT
GATTCGTCGTAGCTTCTTACAGCCATCTTAAGTCCCGTAAAGGGTTGGCC
ACGGGGCCGGGCACAGGAGACAGGGCGCTCGTGATGGCCCCGACAAGCAC
GAATAAAATAGAAGGCAGTAGGGCGCCTTTCGCAAGTACACGAGTGGAGG
GGGAGAGGATCAGTAGGCTGCATGAAATAAATGGCCACCACGATCACCGG
GAGAGAGAGGGGACGCCGACTCCGGCTTTGGCAGGCACACCATCCTCATC
GCTTTACTTGACGCCTCCTTCCTCGGGCCCCGCGCGCGATTATACCCCCA
TGTCCATAGCCAACACGGCCCCACCCAAGCCGGCGCGGCGGTCCTCGGTC
GGGCCTGGCGTTCCTCCGTTTACACCACTGCATGGATCCCCGCCACTGGA
GCCATCGTCCGACGAAGCCGCATCTCCAGACACCTTCGCATCCCCCCCGT
GGCGGCAGGCTCAAGCACCCCCATCGTCCGAGACCGGGGCAGCAGCGCGC
AAAGCGGAGGACGTGGACGACGGCTCGTACGTGGACGAGATCTTGGAGGG
CGTGAGTGGGCTGGGGCTGGGCAGTCTGGGCCCCCTGCAAGGGGACTGGC
TGCCGCAAATCGCCGCCATCCTGGAGCAGGTGCACCTCAAGAGCAAGGAG
CGAGACCCAGAGGCTCCCGACATTGGTGGCGTGGCGGAATACCTGCGGCG
TCTGGACATTCGGAAACGACGGGCGTCCCTGTCCCCCTCCCCCATGGGAG
ACAGCCAGGACCAGACCCGAGGGAGGGAGGGGGGGAGGGAGGGAGGGAGG
GAGGGCGGGAGGGAGGGAGGGGGAATGGCCCAGGTGCATCAGCTTTCCCC
GCCCTCCCCCGTGTCGCGCCATGCTGGGGGCAAGCCGCCGCGCGACCAGA
CTGTCGCGGCCTCCCTGACCCCTCGCCCAGACTCCGGGTCGGTTTTTACA
AGCCCGGGGCCCGACGGGAGGGAGAGGGCGGAGGGGGGGAAAGCAGCAGC
AGGGGCGGGGACGGAGGGTGACAAGGAGGGACAGGGGGTTGGGGCAGAGG
AGCATGCGTCGCACGTGGCGAGGGCGCCCCTGCCCATGCCGGCCTGCGCC
ACGTCCTCAGGCCCCGCCGCCAATCCGGACCTCAGCTTCCGTTGCCTCGG
GCCAT
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protein sequence of rna3616

>rna3616-protein ID=rna3616-protein|Name=rna3616|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MIAQPARLLFCVALPALATAFLARAPTTVPHTHSVRKGRTVVMESISEFL
KFDAKLGELEVTKAGVSAPFGFFDPLNFYGGKTIRQKKKLRESELKHGRV
AMMAVLGIFVQELWHPLLAGDDFETALSQYYGVTEFIPDFGAGALFVLSL
FEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCPDDDEAFV
RMRTKELNNGRMAMIAAIGIIGQELATGVPVVKSLFG
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mRNA from alignment at CM002461.1:817924..819423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3616 ID=rna3616|Name=rna3616|organism=Nannochloropsis gaditana|type=mRNA|length=1500bp|location=Sequence derived from alignment at CM002461.1:817924..819423- (Nannochloropsis gaditana)
GCCTTTGTCCTGTATTTGTGCCCACCGTGAGCGCGTTGGGGCGTGCGTGG
CCGTATCGCCGGCATCGTGTCGGACCCCGATCCTGCTAGCCAGGCTCTGT
GGCCCTGTGACCGAGTCCTTTCCGCCGTGTTCCAAGAAGTCCGCGCTGTC
TTGCTCAGTGCTTGTGTGTCTGTGTTGTTGCTAGTTGTGTCTTTAGCAGA
CGCTGACATTCTTTCTTTACCTGCAATCTACAGATCACGCATTGTAAAGC
TGAAGCATGATTGCCCAGCCTGCTCGGCTCTTGTTCTGCGTGGCCCTCCC
GGCCCTTGCCACCGCCTTCCTGGCCCGTGCTCCCACCACAGTACCTCACA
CTCACTCGGTGAGGAAAGGGCGTACTGTTGTTATGGAGTCTATCTCGGAG
TTCCTCAAGTTTGATGCGAAACTCGGCGAGTTGGAGGTGACCAAAGCGGG
AGTGTAAGTACGGAAGACAAGCTGATTTATCGAGCGAGAATGGCAGCGTT
TTGGGTCCATTTGGATCACACATTTATACCTTTAAAAGTACCTCGAGGAG
TTTCAAGTAGTGTACGAAGTCTCTCGTGAAGCTCTCCTTTCATGAACATG
TCGCATATAAAATTCCTCGTCTCACTCGGTGCACCTCAATTCTTACTCAC
CAGCTCTGCTCCATTCGGGTTCTTCGATCCCTTGAACTTTTACGGAGGCA
AAACCATTCGCCAGAAGAAAAAGCTGCGCGAGTCTGAACTCAAACACGGT
CGCGTTGCTATGATGGCGGTGCTGGGCATTTTCGTCCAAGAACTCTGGCA
TCCTCTTCTGGCAGGTGATGATTTCGAAACCGCGCTCAGCCAATACTACG
GCGTGACGGAGTTTATTCCCGACTTCGGCGCGGGGGCCCTCTTTGTCCTT
TCTCTTTTTGAGTTCAAAAGCATCGCTATGGGATGGGATCCCGTCGAGGA
GACTCTCAAAGAGCCAAGTGAGTGAATTTCTTTCAAAACACATGATACCT
CCCGTAATATATTGAAATTCTTACTCTTGTTGCTCCGTCGGCGTGCGTGG
CGATGCTTTGACTCATAGGTACATGAAAAAGGGACGCTGTTTCCTTACAA
TCATGTCTCGCTCACCCGGATGCTTCGCCATTTTCACCCAAATCCATCAC
AATACTTTTCTTGATAACAGAAATTGCCGGTATGCGTGATGATTATGTGG
CGGGAGACTTACAGTACGATCCTCTGGGCTTCTGTCCCGACGATGACGAA
GCCTTTGTGCGCATGCGCACTAAGGAGCTCAACAACGGGCGTATGGCCAT
GATCGCCGCCATTGGCATCATCGGACAGGAGCTGGCCACGGGCGTGCCTG
TTGTCAAGTCGCTCTTTGGGTAAACCTGTGAATGTTTCTTGATCAGCGCC
AGTCTTGGTACTCCTCAACGCGCACTCGATCTCACGGCGATCCATTCCAT
TTTGAAATATTTGTTACCTTTTAAATCCAAAACCAAGTCGCGACTGGACT
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Coding sequence (CDS) from alignment at CM002461.1:817924..819423-

>rna3616 ID=rna3616|Name=rna3616|organism=Nannochloropsis gaditana|type=CDS|length=2142bp|location=Sequence derived from alignment at CM002461.1:817924..819423- (Nannochloropsis gaditana)
AAATTGCCGGTATGCGTGATGATTATGTGGCGGGAGACTTACAGTACGAT
CCTCTGGGCTTCTGTCCCGACGATGACGAAGCCTTTGTGCGCATGCGCAC
TAAGGAGCTCAACAACGGGCGTATGGCCATGATCGCCGCCATTGGCATCA
TCGGACAGGAGCTGGCCACGGGCGTGCCTGTTGTCAAGTCGCTCTTTGGG
TAACTCTGCTCCATTCGGGTTCTTCGATCCCTTGAACTTTTACGGAGGCA
AAACCATTCGCCAGAAGAAAAAGCTGCGCGAGTCTGAACTCAAACACGGT
CGCGTTGCTATGATGGCGGTGCTGGGCATTTTCGTCCAAGAACTCTGGCA
TCCTCTTCTGGCAGGTGATGATTTCGAAACCGCGCTCAGCCAATACTACG
GCGTGACGGAGTTTATTCCCGACTTCGGCGCGGGGGCCCTCTTTGTCCTT
TCTCTTTTTGAGTTCAAAAGCATCGCTATGGGATGGGATCCCGTCGAGGA
GACTCTCAAAGAGCCAAATGATTGCCCAGCCTGCTCGGCTCTTGTTCTGC
GTGGCCCTCCCGGCCCTTGCCACCGCCTTCCTGGCCCGTGCTCCCACCAC
AGTACCTCACACTCACTCGGTGAGGAAAGGGCGTACTGTTGTTATGGAGT
CTATCTCGGAGTTCCTCAAGTTTGATGCGAAACTCGGCGAGTTGGAGGTG
ACCAAAGCGGGAGTAAATTGCCGGTATGCGTGATGATTATGTGGCGGGAG
ACTTACAGTACGATCCTCTGGGCTTCTGTCCCGACGATGACGAAGCCTTT
GTGCGCATGCGCACTAAGGAGCTCAACAACGGGCGTATGGCCATGATCGC
CGCCATTGGCATCATCGGACAGGAGCTGGCCACGGGCGTGCCTGTTGTCA
AGTCGCTCTTTGGGTAACTCTGCTCCATTCGGGTTCTTCGATCCCTTGAA
CTTTTACGGAGGCAAAACCATTCGCCAGAAGAAAAAGCTGCGCGAGTCTG
AACTCAAACACGGTCGCGTTGCTATGATGGCGGTGCTGGGCATTTTCGTC
CAAGAACTCTGGCATCCTCTTCTGGCAGGTGATGATTTCGAAACCGCGCT
CAGCCAATACTACGGCGTGACGGAGTTTATTCCCGACTTCGGCGCGGGGG
CCCTCTTTGTCCTTTCTCTTTTTGAGTTCAAAAGCATCGCTATGGGATGG
GATCCCGTCGAGGAGACTCTCAAAGAGCCAAATGATTGCCCAGCCTGCTC
GGCTCTTGTTCTGCGTGGCCCTCCCGGCCCTTGCCACCGCCTTCCTGGCC
CGTGCTCCCACCACAGTACCTCACACTCACTCGGTGAGGAAAGGGCGTAC
TGTTGTTATGGAGTCTATCTCGGAGTTCCTCAAGTTTGATGCGAAACTCG
GCGAGTTGGAGGTGACCAAAGCGGGAGTAAATTGCCGGTATGCGTGATGA
TTATGTGGCGGGAGACTTACAGTACGATCCTCTGGGCTTCTGTCCCGACG
ATGACGAAGCCTTTGTGCGCATGCGCACTAAGGAGCTCAACAACGGGCGT
ATGGCCATGATCGCCGCCATTGGCATCATCGGACAGGAGCTGGCCACGGG
CGTGCCTGTTGTCAAGTCGCTCTTTGGGTAACTCTGCTCCATTCGGGTTC
TTCGATCCCTTGAACTTTTACGGAGGCAAAACCATTCGCCAGAAGAAAAA
GCTGCGCGAGTCTGAACTCAAACACGGTCGCGTTGCTATGATGGCGGTGC
TGGGCATTTTCGTCCAAGAACTCTGGCATCCTCTTCTGGCAGGTGATGAT
TTCGAAACCGCGCTCAGCCAATACTACGGCGTGACGGAGTTTATTCCCGA
CTTCGGCGCGGGGGCCCTCTTTGTCCTTTCTCTTTTTGAGTTCAAAAGCA
TCGCTATGGGATGGGATCCCGTCGAGGAGACTCTCAAAGAGCCAAATGAT
TGCCCAGCCTGCTCGGCTCTTGTTCTGCGTGGCCCTCCCGGCCCTTGCCA
CCGCCTTCCTGGCCCGTGCTCCCACCACAGTACCTCACACTCACTCGGTG
AGGAAAGGGCGTACTGTTGTTATGGAGTCTATCTCGGAGTTCCTCAAGTT
TGATGCGAAACTCGGCGAGTTGGAGGTGACCAAAGCGGGAGT
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Synonyms
Publications