rna3612, rna3612 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3612
Unique Name	rna3612
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1272
Alignment location	CM002461.1:805937..808019 +

Link to JBrowse

Properties


Property Name	Value
Product	lactation elevated 1
Orig transcript id	gnl\|cribi\|Naga_100194g4.7129.mrna
Orig protein id	gnl\|cribi\|Naga_100194g4.7129
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:805937..808019 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100194g4	gene3479	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3612	rna3612-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27077.1	cds3603	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:805937..808019+
coding sequence from alignment at CM002461.1:805937..808019+

mRNA sequence

>rna3612 ID=rna3612|Name=rna3612|organism=Nannochloropsis gaditana|type=mRNA|length=1272bp
ATCTCAGTCTTTGTTCACAACCAGAACTTCTACGGAAAGGCGCGTCACAC
AAACAGACCTTGAACCTTAATATGTGATTCCCTGATAGTACTAAACAGCT
AGACATGCCTTCTCACCTAGTTCGTGTCGTCATGAATGAAACAGAGCCCA
GCCGGAGACGCTCCGACCTCCTCTCCCCCCTCCCCTACGCTGTGATACTA
AAGAGTACAGCACGTCAACCTTTCCCTATACGGCCCATGTATACGCTTTC
ATTGCTTGCGGTTATCTCATTGCTGGCTAGCATGCTGCTATCGGAGGCCT
TCATTGTTTGTACGAAGCCCTCTCCTGAAGTTGTCGTGAGAAGGAGAACG
CACTCCATCCTTTTCATGAGCACCGACGCCCTAGAAAAGGCCGCTTCCTC
TTCGACAGTGTCCAGTGACACCTCCTCGGCAGAATCAGACACTGTCATCA
AGTCTGCTGGTCCCTGCAAAAACTTTCCGAAGTGTGACGGGGCCTATTTA
AATAGAGGCTGCGGGGGCACCGGCAAAATCCAGGGGGGTATCGCAACCTT
TCCTCTTCTAGGGTGGTGGCCAATCAAGGCGTACCGTCCATGTCCCTCTG
CGACAGAGGCGGGCTATGGCTACAAGCGGAAGGGACAAGATTTCTCCGAA
TTCATTGCTGGAGAGCGGCGGAAGAAGCCGGAAGGGGAAGAACTAATCGA
TGTTTAGAAATGGGACAGTAGAATCACGCAATGTTGTGGGTCGTGCGTGA
ATGACTTGCCATTTTTGGTGGCATAAGGACGTTGGACGAGGACGTCAGTG
AAGATGCTGGGACGATGAGAGAAATTGAATTTTCAGGACGAAGGTTGTCA
TTCGTGTCCTACCTTCCGTTTCTTTTGTTTTTGTTGACTCTCTTTACCAC
TTCACCTTTGATTTGACGAGGAGTACAGTAAGCGACTTTGTGCTGCGAGT
GAATGGCATGACGAGACGGCAAGATGAGGCTTGAAACAAGACAGTGGGTC
CCGTGTTTGTCAAATCAGTATGAGCATCTTGTGCTTTCGAAAATCCGTCT
GGTAGCAGACATGCCGGACGTGAAGCTCTTCTGGCGAGCACGAATTCGTT
TCTATGAAAAGACAATCCACTGCTCGGCTTCTTGACACCTCGCACCTCGA
TGTTGGCCCTATCTTGTTTAAACATAAAATATTCCTCTTTTTGCTTCCGC
TGTTACATGCAGCCTCAGAGTCATCGCAAGTTGGATGTCGCAAGTTTATT
GTCTGAATAAGGTACAAATCAA

protein sequence of rna3612

>rna3612-protein ID=rna3612-protein|Name=rna3612|organism=Nannochloropsis gaditana|type=polypeptide|length=575bp
MLGRPVLLLAARQRRPFLASTRALGLASTWHANSLRPGLQNEVASAGIAN
RPLIEVYEALVNEGALRRDAKQHRVARRLDKLSRLLATYTPPMSFKQMDS
SLTLPSSSSSSEKKTTPSSTAVASPSSPTAQHKVLRGLYLHGEVGTGKSL
LMDLFFHHCPLKRKRRVHFHSFMLEVHARIHAWKQEALQREGRQRHVDLR
PERNAITQIARQIGQEATVLCFDEFQVTDVADAIIMSRLFAELWQGSGVV
VVATSNRPPEDLYLGGLNRPYFLPFIDLLRRQCRVESMESERDHRRGFAW
QQGKYFTPTVHEGVSEAKRRVGEGENAGAGSKGGKEEEKKGRMAEVKETF
KGRREAARALDAAFLRLSGGRRGGPCQVPVMMGRTLRVPEACGGICRFSF
EELCATDVFAADYQALSGYFHTLVLEGVACMGARRANEARRFITLVDVLY
ESKTRLLMSAERPIGNLFLGEERKEEGNTGSGGVVGGSGVQVGSGAGGGG
TRDREGGRELEAGGKEGAGREHVDAAQELMVPEGELASVKELSFAFRRAA
SRLREMASQEYWNAGGEGRTGERGP

mRNA from alignment at CM002461.1:805937..808019+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3612 ID=rna3612|Name=rna3612|organism=Nannochloropsis gaditana|type=mRNA|length=2083bp|location=Sequence derived from alignment at CM002461.1:805937..808019+ (Nannochloropsis gaditana)
ATGCTCGGCCGTCCTGTCCTACTTTTGGCTGCACGGCAACGTCGTCCTTT
TTTAGCCTCCACGCGGGCTCTAGGCCTTGCTTCTACTTGGCACGCAAACT
CCCTTCGTCCAGGACTTCAGGTAGGGCCTCGCCTCCTCAATTTGTGGCAC
GAATTCATGCTTTGCATCACGCCCACGCCTTCTGCATACGATACACTCAC
AGAACGAAGTAGCGAGTGCTGGTATTGCAAATCGACCTTTAATTGAAGTG
TACGAAGCACTGGTAAATGAAGGGGCTTTGCGCAGAGACGCAAAGCAACA
TCGAGTTGCCAGACGGCTTGATAAGCTCTCACGTCTCCTCGCTACCTATA
CTCCACCAATGAGCTTTAAACAAATGGATTCTTCGCTGACCTTACCGTCA
AGTTCATCATCGAGCGAAAAGAAAACGACGCCCTCATCGACCGCTGTAGC
GTCACCATCGTCCCCCACCGCACAGCACAAGGTCCTCCGAGGCTTATACT
TACACGGCGAAGTCGGCACGGGAAAGTCCTTGCTGATGGACCTTTTTTTC
CACCACTGCCCTTTGAAACGCAAGCGGCGGGTGCATTTTCACTCATTTAT
GTTAGAAGTTCATGCTCGAATTCACGCTTGGAAGCAGGAGGCGTTGCAGA
GAGAAGGACGACAACGTCACGTGGACTTGCGGCCTGAGCGCAACGCGATC
ACACAAATCGCACGGCAGATAGGGTAGGTGGAAAAGGCATGGGTAAAGAA
CGGATAGGAGGCAGTGCTCAGAAAGATTTACGGGTGCAAAAGCAATCAGG
CGTAgtgtctcctttccctcaggCGTGGCTCACCCTCGGAGGGGCCTTTC
GTTGCATGCCTGTCCGGGATCGAATTGGCCGACCACAGGGTGACATTAAA
GAGGAAATGCTTCCAAATGAATCCGTAACTTTTGATCCGCCGCATTGTCA
TATACCCCCCCGCAACGCCATCCTtacccccggccctcccccccaggcAG
GAGGCCACGGTCCTGTGCTTCGACGAGTTTCAGGTGACGGACGTTGCGGA
TGCCATAATCATGAGCCGTCTATTTGCCGAACTCTGGCAGGGGagcgggg
tggtggtggtggccacCTCGAATAGGCCCCCGGAAGACCTGTACTTGGGA
GGCCTGAATCGACCttacttcctccccttcataGACCTGCTCAGGCGGCA
GTGCCGGGTGGAGTCCATGGAGTCGGAGAGGGATCACCGCCGAGGCTTTG
CCTGGCAGCAAGGGAAGTATTTCACCCCTACTGTCCACGAGGGGGTCTca
gaggcgaagaggagagttggagagggggagaatgcGGGGGCCGgatcgaa
gggggggaaggaagaagagaaaaagggaaggatggcagaggtgaaggaga
ctttcaaaggcaggagggaggcggcgagggctTTGGACGCGGCTTTCCTG
CGCCTTAGTGGGGGACGCCGAGGGGGGCCATGCCAGGTCCCGGTGATGAT
GGGCCGGACGCTCCGGGTCCCCGAGGCCTGCGGAGGCATCTGTCGCTTCA
GTTTCGAAGAGCTGTGCGCGACAGATGTGTTCGCCGCGGACTACCAGGCC
CTGAGCGGGTATTTCCACACgttggtgctggagggggtggccTGTATggg
agcgcggagggcgaACGAGGCCAGGCGCTTCATCACCCTTGTGGATGTCC
TCTACGAGAGCAAGACTCGCCTTCTCATGTCGGCGGAGAGGCCCATCGGA
AATTTGTttctgggggaggagaggaaggaggaagggaatacAGGCAGCGG
TGGGGTAGTTGGTGGCAGCGGCGTCCAGGTCGGctcgggggcaggggggg
gggggacgagggacagggagggaggaagggaattgGAAGcagggggcaag
gaaggggcagggcgggaacATGTGGATGCGGCTCAAGAGTTAATGGTCCC
GGAGGGGGAGCTGGCATCGGTGAAAGAgctttccttcgccttccgcAGGG
CTGCCTCCCGCTTGAGAGAGATGGCGAGCCAGGAATACTGGAacgcgggg
ggagagggaaggacgggagaaagggggccgTAG

Coding sequence (CDS) from alignment at CM002461.1:805937..808019+

>rna3612 ID=rna3612|Name=rna3612|organism=Nannochloropsis gaditana|type=CDS|length=5184bp|location=Sequence derived from alignment at CM002461.1:805937..808019+ (Nannochloropsis gaditana)
ATGCTCGGCCGTCCTGTCCTACTTTTGGCTGCACGGCAACGTCGTCCTTT
TTTAGCCTCCACGCGGGCTCTAGGCCTTGCTTCTACTTGGCACGCAAACT
CCCTTCGTCCAGGACTTCAGAACGAAGTAGCGAGTGCTGGTATTGCAAAT
CGACCTTTAATTGAAGTGTACGAAGCACTGGTAAATGAAGGGGCTTTGCG
CAGAGACGCAAAGCAACATCGAGTTGCCAGACGGCTTGATAAGCTCTCAC
GTCTCCTCGCTACCTATACTCCACCAATGAGCTTTAAACAAATGGATTCT
TCGCTGACCTTACCGTCAAGTTCATCATCGAGCGAAAAGAAAACGACGCC
CTCATCGACCGCTGTAGCGTCACCATCGTCCCCCACCGCACAGCACAAGG
TCCTCCGAGGCTTATACTTACACGGCGAAGTCGGCACGGGAAAGTCCTTG
CTGATGGACCTTTTTTTCCACCACTGCCCTTTGAAACGCAAGCGGCGGGT
GCATTTTCACTCATTTATGTTAGAAGTTCATGCTCGAATTCACGCTTGGA
AGCAGGAGGCGTTGCAGAGAGAAGGACGACAACGTCACGTGGACTTGCGG
CCTGAGCGCAACGCGATCACACAAATCGCACGGCAGATAGGgcAGGAGGC
CACGGTCCTGTGCTTCGACGAGTTTCAGGTGACGGACGTTGCGGATGCCA
TAATCATGAGCCGTCTATTTGCCGAACTCTGGCAGGGGagcggggtggtg
gtggtggccacCTCGAATAGGCCCCCGGAAGACCTGTACTTGGGAGGCCT
GAATCGACCttacttcctccccttcataGACCTGCTCAGGCGGCAGTGCC
GGGTGGAGTCCATGGAGTCGGAGAGGGATCACCGCCGAGGCTTTGCCTGG
CAGCAAGGGAAGTATTTCACCCCTACTGTCCACGAGGGGGTCTcagaggc
gaagaggagagttggagagggggagaatgcGGGGGCCGgatcgaaggggg
ggaaggaagaagagaaaaagggaaggatggcagaggtgaaggagactttc
aaaggcaggagggaggcggcgagggctTTGGACGCGGCTTTCCTGCGCCT
TAGTGGGGGACGCCGAGGGGGGCCATGCCAGGTCCCGGTGATGATGGGCC
GGACGCTCCGGGTCCCCGAGGCCTGCGGAGGCATCTGTCGCTTCAGTTTC
GAAGAGCTGTGCGCGACAGATGTGTTCGCCGCGGACTACCAGGCCCTGAG
CGGGTATTTCCACACgttggtgctggagggggtggccTGTATgggagcgc
ggagggcgaACGAGGCCAGGCGCTTCATCACCCTTGTGGATGTCCTCTAC
GAGAGCAAGACTCGCCTTCTCATGTCGGCGGAGAGGCCCATCGGAAATTT
GTttctgggggaggagaggaaggaggaagggaatacAGGCAGCGGTGGGG
TAGTTGGTGGCAGCGGCGTCCAGGTCGGctcgggggcagggggggggggg
acgagggacagggagggaggaagggaattgGAAGcagggggcaaggaagg
ggcagggcgggaacATGTGGATGCGGCTCAAGAGTTAATGGTCCCGGAGG
GGGAGCTGGCATCGGTGAAAGAgctttccttcgccttccgcAGGGCTGCC
TCCCGCTTGAGAGAGATGGCGAGCCAGGAATACTGGAacgcggggggaga
gggaaggacgggagaaagggggccgTAGATGCTCGGCCGTCCTGTCCTAC
TTTTGGCTGCACGGCAACGTCGTCCTTTTTTAGCCTCCACGCGGGCTCTA
GGCCTTGCTTCTACTTGGCACGCAAACTCCCTTCGTCCAGGACTTCAGAA
CGAAGTAGCGAGTGCTGGTATTGCAAATCGACCTTTAATTGAAGTGTACG
AAGCACTGGTAAATGAAGGGGCTTTGCGCAGAGACGCAAAGCAACATCGA
GTTGCCAGACGGCTTGATAAGCTCTCACGTCTCCTCGCTACCTATACTCC
ACCAATGAGCTTTAAACAAATGGATTCTTCGCTGACCTTACCGTCAAGTT
CATCATCGAGCGAAAAGAAAACGACGCCCTCATCGACCGCTGTAGCGTCA
CCATCGTCCCCCACCGCACAGCACAAGGTCCTCCGAGGCTTATACTTACA
CGGCGAAGTCGGCACGGGAAAGTCCTTGCTGATGGACCTTTTTTTCCACC
ACTGCCCTTTGAAACGCAAGCGGCGGGTGCATTTTCACTCATTTATGTTA
GAAGTTCATGCTCGAATTCACGCTTGGAAGCAGGAGGCGTTGCAGAGAGA
AGGACGACAACGTCACGTGGACTTGCGGCCTGAGCGCAACGCGATCACAC
AAATCGCACGGCAGATAGGgcAGGAGGCCACGGTCCTGTGCTTCGACGAG
TTTCAGGTGACGGACGTTGCGGATGCCATAATCATGAGCCGTCTATTTGC
CGAACTCTGGCAGGGGagcggggtggtggtggtggccacCTCGAATAGGC
CCCCGGAAGACCTGTACTTGGGAGGCCTGAATCGACCttacttcctcccc
ttcataGACCTGCTCAGGCGGCAGTGCCGGGTGGAGTCCATGGAGTCGGA
GAGGGATCACCGCCGAGGCTTTGCCTGGCAGCAAGGGAAGTATTTCACCC
CTACTGTCCACGAGGGGGTCTcagaggcgaagaggagagttggagagggg
gagaatgcGGGGGCCGgatcgaagggggggaaggaagaagagaaaaaggg
aaggatggcagaggtgaaggagactttcaaaggcaggagggaggcggcga
gggctTTGGACGCGGCTTTCCTGCGCCTTAGTGGGGGACGCCGAGGGGGG
CCATGCCAGGTCCCGGTGATGATGGGCCGGACGCTCCGGGTCCCCGAGGC
CTGCGGAGGCATCTGTCGCTTCAGTTTCGAAGAGCTGTGCGCGACAGATG
TGTTCGCCGCGGACTACCAGGCCCTGAGCGGGTATTTCCACACgttggtg
ctggagggggtggccTGTATgggagcgcggagggcgaACGAGGCCAGGCG
CTTCATCACCCTTGTGGATGTCCTCTACGAGAGCAAGACTCGCCTTCTCA
TGTCGGCGGAGAGGCCCATCGGAAATTTGTttctgggggaggagaggaag
gaggaagggaatacAGGCAGCGGTGGGGTAGTTGGTGGCAGCGGCGTCCA
GGTCGGctcgggggcaggggggggggggacgagggacagggagggaggaa
gggaattgGAAGcagggggcaaggaaggggcagggcgggaacATGTGGAT
GCGGCTCAAGAGTTAATGGTCCCGGAGGGGGAGCTGGCATCGGTGAAAGA
gctttccttcgccttccgcAGGGCTGCCTCCCGCTTGAGAGAGATGGCGA
GCCAGGAATACTGGAacgcggggggagagggaaggacgggagaaaggggg
ccgTAGATGCTCGGCCGTCCTGTCCTACTTTTGGCTGCACGGCAACGTCG
TCCTTTTTTAGCCTCCACGCGGGCTCTAGGCCTTGCTTCTACTTGGCACG
CAAACTCCCTTCGTCCAGGACTTCAGAACGAAGTAGCGAGTGCTGGTATT
GCAAATCGACCTTTAATTGAAGTGTACGAAGCACTGGTAAATGAAGGGGC
TTTGCGCAGAGACGCAAAGCAACATCGAGTTGCCAGACGGCTTGATAAGC
TCTCACGTCTCCTCGCTACCTATACTCCACCAATGAGCTTTAAACAAATG
GATTCTTCGCTGACCTTACCGTCAAGTTCATCATCGAGCGAAAAGAAAAC
GACGCCCTCATCGACCGCTGTAGCGTCACCATCGTCCCCCACCGCACAGC
ACAAGGTCCTCCGAGGCTTATACTTACACGGCGAAGTCGGCACGGGAAAG
TCCTTGCTGATGGACCTTTTTTTCCACCACTGCCCTTTGAAACGCAAGCG
GCGGGTGCATTTTCACTCATTTATGTTAGAAGTTCATGCTCGAATTCACG
CTTGGAAGCAGGAGGCGTTGCAGAGAGAAGGACGACAACGTCACGTGGAC
TTGCGGCCTGAGCGCAACGCGATCACACAAATCGCACGGCAGATAGGgcA
GGAGGCCACGGTCCTGTGCTTCGACGAGTTTCAGGTGACGGACGTTGCGG
ATGCCATAATCATGAGCCGTCTATTTGCCGAACTCTGGCAGGGGagcggg
gtggtggtggtggccacCTCGAATAGGCCCCCGGAAGACCTGTACTTGGG
AGGCCTGAATCGACCttacttcctccccttcataGACCTGCTCAGGCGGC
AGTGCCGGGTGGAGTCCATGGAGTCGGAGAGGGATCACCGCCGAGGCTTT
GCCTGGCAGCAAGGGAAGTATTTCACCCCTACTGTCCACGAGGGGGTCTc
agaggcgaagaggagagttggagagggggagaatgcGGGGGCCGgatcga
agggggggaaggaagaagagaaaaagggaaggatggcagaggtgaaggag
actttcaaaggcaggagggaggcggcgagggctTTGGACGCGGCTTTCCT
GCGCCTTAGTGGGGGACGCCGAGGGGGGCCATGCCAGGTCCCGGTGATGA
TGGGCCGGACGCTCCGGGTCCCCGAGGCCTGCGGAGGCATCTGTCGCTTC
AGTTTCGAAGAGCTGTGCGCGACAGATGTGTTCGCCGCGGACTACCAGGC
CCTGAGCGGGTATTTCCACACgttggtgctggagggggtggccTGTATgg
gagcgcggagggcgaACGAGGCCAGGCGCTTCATCACCCTTGTGGATGTC
CTCTACGAGAGCAAGACTCGCCTTCTCATGTCGGCGGAGAGGCCCATCGG
AAATTTGTttctgggggaggagaggaaggaggaagggaatacAGGCAGCG
GTGGGGTAGTTGGTGGCAGCGGCGTCCAGGTCGGctcgggggcagggggg
ggggggacgagggacagggagggaggaagggaattgGAAGcagggggcaa
ggaaggggcagggcgggaacATGTGGATGCGGCTCAAGAGTTAATGGTCC
CGGAGGGGGAGCTGGCATCGGTGAAAGAgctttccttcgccttccgcAGG
GCTGCCTCCCGCTTGAGAGAGATGGCGAGCCAGGAATACTGGAacgcggg
gggagagggaaggacgggagaaagggggccgTAG

Synonyms

Publications