rna361, rna361 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna361
Unique Name	rna361
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	390
Alignment location	CM002455.1:878470..882344 +

Link to JBrowse

Properties


Property Name	Value
Product	regulator of chromatin silencing
Orig transcript id	gnl\|cribi\|Naga_100003g135.1818.mrna
Orig protein id	gnl\|cribi\|Naga_100003g135.1818
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:878470..882344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g135	gene348	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna361	rna361-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30301.1	cds361	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:878470..882344+
coding sequence from alignment at CM002455.1:878470..882344+

mRNA sequence

>rna361 ID=rna361|Name=rna361|organism=Nannochloropsis gaditana|type=mRNA|length=390bp
ATGAATTTGACTCGTTACACATTCTTCATAAGCGATATGATGCATGCTGC
GACGAAGTTGTTGGGTGGCAGGAAGCAAGGTGCGACGTTGCCTCAAGTTA
CGTGGAGGAAAAGGAATAAGGTCGCTTTAATCGCTCTATGCGAGAAAATA
TCCTTATATAACTGCGTTATGGCTTGTATTCACGCATGTAACTTTGCATC
GATAGTAATTTATTGCCGTCTGCGTTCTAAGTCTGCAGGCAAGCATTATC
ATCAAAAATGCAAACGAAAGCTCTTTTTCGTGAAAAACTCAATGTACCTC
TTGGGGGCTGAGGCCCACGACTCCAGAAAATTGAACCTAAGACTCTCACG
GACTTGCAAAAAGGATTTGTGTGCTCGAGACATGACTTGA

protein sequence of rna361

>rna361-protein ID=rna361-protein|Name=rna361|organism=Nannochloropsis gaditana|type=polypeptide|length=795bp
MKFCVTSPNKWCYCFKPTHTNSILHTINTITVSNWTMWQHDRGRHGSATK
GNFISLARGDESQESSDPDEENVFDLDVDTDSNSGKDLYGGTEREKEAMD
EEEEDDDEEEEEGEEEEEEEEEEEGGSGDEDRDDQEAELQDVRRWGKHKN
QYYSADAVDLEIGQDFEEAEEEEVAAREVEQARYDEVEENDYLDGWNTDK
NILVQKNKFMRPEIGMHSITKPNTQSITSGLSSWQESMMDQTEMEMAQLE
QGLLTTSTAGKLRMLSTSSPELLTLLEDFKDKLSELQDRVEPLAEMARDG
ACAVRLNEEGVAYLEVKQQLLLNYCLNLTYYLLLKAEGRAVKDHPVIAQL
VELRVALEKMRPLDAKLKYHLDRLTKVASVDGSSRIHDDPLSFRPNPDLL
VGKRGQDRVEDGNGKDLDNTEGNGHREVLYRPPRLAAVPYGEKTGADGGR
ESKNEALARKRLEKLRRSELLQTLTEQYRDKPELVAEHKSLENSVQQRAD
YAEEERRIFEEERFTRLVTSRRDKKARRLANEQATRLETIADIGDFHELH
ASLNAFQNGAQSKASYSASNSNDREVKQMRQLRDKKDMNALQKAVNSIAQ
KEQMTKRQRNNDLHGDIDLPHRNECVRRVRRATASIDEERGDMINSAKIP
TNARQKAIQVHHGDADEQVTASCLPPEHPLYKTVATSKSKRKAEKAALYA
VEPQYGAVEDGLTVGAMGEGGKRGINHQMLKNRGLTAYKSKLNRNPRVKK
REAYRKAVIKRKGQVRDVRESEAAHYGGEATGINAKVIRVRGKGT

mRNA from alignment at CM002455.1:878470..882344+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna361 ID=rna361|Name=rna361|organism=Nannochloropsis gaditana|type=mRNA|length=3875bp|location=Sequence derived from alignment at CM002455.1:878470..882344+ (Nannochloropsis gaditana)
CCTTGTTCCGTGCTTTACAACGTAGCTGCGTGTGGTACATGGTGCATGGT
TGCTCCCTGTCTACCAGGCACCATGCGCATTTTAATATATATTTATTTCA
CGTTTATATCTGCGTCTGGTCGTAGTATCAATGAAAAAGAGCTACCTATA
GACTACCATTCCGGGCGTTGCGTGGTGCGGCAGAACCCTGCATTTTGGGG
ACTCATCTGATGATATTGTTTCCTTGCCTCTCGTTGTTTTGTACTTGAGC
CGAGTAGAGAGAATTCTGACTATGCTAGTCAATGTAATCAAGCGTTATTT
ACAAAGAGGTGTATGGTTTTGGAAATAATATCCTCTTTGATTAGCCGTGA
GGTCGGTCGCACGTCGTGGATTGACCAACCTAACCTAGTACCTTGCGCCG
CGTCTCTCTGAGAAGCTTGGGGCTAAAATAGACAATCCCGGTAAAAGCTC
GTCAGTATTGTCTCCAAGGTTTGATGGAAATCAATCCATGAAATTCTTGA
TTACATTTTAATTTCCTCGAAAACATCTGTTTGCTCTTTCGTCGGCTGGG
AATGAAATTTTGTGTTACCAGTCCCAATAAATGGTGTTATTGTTTCAAGC
CAACTCATACGAATTCAATCTTGCATACTATCAACACAATAACAGTCAGC
AATTGGACCATGTGGCAGCATGATAGAGGGCGCCACGGTTCAGCTACAAA
AGGTAATTTCATATCGCTCGCTCGAGGTGACGAAAGTCAGGAATCAAGCG
ACCCGGACGAAGAAAATGTCTTCGATTTAGATGTAGATACCGACTCCAAC
AGCGGAAAAGACCTCTATGGAGGAacagagagggagaaggaggcaatgga
tgaggaagaagaagacgacgacgaggaggaggaggagggggaggaagagg
aggaagaggaggaagaggaagagggtgggagtggcGATGAGGACAGAGAT
GACCAGGAAGCAGAGCTCCAGGACGTGCGGCGATGGGGAAAGCATAAAAA
TCAGTACTACAGTGCGGATGCTGTAGATTTGGAAATAGGGCAGGATTTCg
aagaggcagaagaagaggaagttgCAGCGCGCGAGGTGGAGCAGGCGCGT
TATgatgaggtggaggagaatgatTATCTAGATGGCTGGAATACAGATAA
AAATATCCTGGTTCAAAAAAATAAATTCATGCGTCCTGAGATCGGGATGC
ATAGTATAACAAAGCCAAACACGCAGTCGATTACTAGTGGGCTGAGCTCG
TGGCAAGAGTCCATGATGGATCAAACCGAGATGGAGATGGCTCAGCTTGA
ACAGGGTTTGTTGACCACAAGCACAGCTGGAAAGCTGCGAATGCTTTCAA
CTAGCTCGCCAGAACTATTGACGTTGCTAGAGGATTTCAAGGACAAGCTG
AGCGAGCTACAGGATCGCGTGGAGCCATTGGCAGAGATGGCGCGAGATGT
AAGTAACAGTTGATTTCAATAATCGGCATTAGTTTGGGTGGAGGACATTG
TAACAATTGGACCCGTTAAGAGGCATAAAGCTCTAACTTAAGTGACCTGC
TGAGGGCAAATTCGTTGCGAAATGAATTTACAGCTGTGTACTGTCCTACG
TCCTCTTGTGGCTGCCTATCCATATCTTTTAAATCCTTCTCCGTTTGCCT
TGTCCTAGTCTTTGAAaaagaggtggaagtggcTTGAGCGTGTCGGTTCA
AAGGATGCACAAGAAATGTAGAGCGGCTCGTCTCTGTCGAACGAGCACTT
TGTGTCCAAACACATTTTAATATCTTTTCATGTTTTGGTATGGATTAGAT
GATATGTTGGAATGCCTGGTGTCCTGAAGCATTTGGTTGCCTCATATGTC
TTTTGTGTCCTTTAGTGTTTTTGGATATCATGAGATTGACATTTATACGC
GTATGCAATCATACGTCGAAAAATATGTACAGGGAGCTTGTGCAGTGCGC
CTGAATGAAGAGGGTGTGGCCTATTTAGAAGTGAAGCAGCAGTTGCTTCT
GAATTATTGTTTGAATTTGACCTATTATCTTCTCCTGAAAGCTGAAGGCC
GTGCTGTGAAAGATCATCCTGTCATTGCACAGCTCGTAGAGCTTCGTGTC
GCGCTGGAAAAGATGAGGCCCCTTGATGCAAAGCTCAAATACCATCTTGA
CCGGCTTACGAAGGTCGCTTCTGTCGACGGATCCTCTAGAATACACGATg
accctctctcctttcggCCAAACCCAGACCTGTTGGTAGGAAAACGTGGT
CAGGACCGAGTGGAGGATGGAAACGGGAAGGATCTTGACAATACAGAGGG
AAATGGCCACAGGGAGGTCTTGtatcgccctcctcgtcttgctgCTGTAC
CGTATGGGGAAAAAACGGGGGCTGATGGTGGACGTGAGAGTAAAAATGAG
GCTTTGGCACGCAAGAGACTTGAAAAACTGCGTCGGTCAGAGCTGCTTCA
GACCCTGACTGAGCAATACAGAGACAAGCCCGAATTGGTAGCAGAGCATA
AATCGCTGGAAAACTCTGTTCAACAGAGAGCAGATTacgcagaggaggag
cggcgaattttcgaggaggagcgcttTACCCGCCTAGTAACTTCCCggag
ggacaagaaggcGCGGAGATTGGCGAATGAGCAAGCGACGCGGCTAGAGA
CTATTGCTGATATCGGTGACTTCCATGAACTACATGCTTCTCTGAACGCT
TTTCAAAACGGTGCTCAAAGCAAAGCATCGTACTCAGCATCAAATAGTAA
CGACAGGGAAGTCAAACAAATGAGACAATTGCGGGATAAGAAAGACATGA
ATGCACTTCAAAAGGCGGTGAATTCTATAGCTCAAAAGGAGCAGATGACG
AAACGCCAACGTAATAATGATCTTCATGGAGATATTGATTTGCCTCACCG
CAATGAATGCGTCCGTAGGGTGCGCCGGGCAACGGCGTCGATTGATGAAG
AGAGAGGCGACATGATCAACTCGGCGAAAATTCCCACCAATGCCAGACAA
AAAGCAATACAGGTGCATCATGGCGATGCAGACGAGCAAGTCACCGCGTC
GTGTTTACCTCCGGAGCATCCTCTGTACAAGACCGTGGCAACTTCCAAAA
GCAAGCGCAAAGCTGAGAAGGCGGCTCTATACGCAGTTGAGCCTCAATAT
GGGGCAGTAGAGGATGGGCTGACGGTCGGTGCgatgggagagggtgggaa
acgCGGAATCAATCATCAAATGCTTAAAAATCGCGGGCTCACGGCCTACA
AGAGTAAACTGAATCGCAATCCTCGTGTGAAGAAGCGAGAGGCCTACCGT
AAGGCTGTGATCAAGCGAAAAGGCCAGGTTCGGGACGTCCGGGAATCCGA
AGCGGCCCATTATGGCGGTGAAGCAACAGGTATCAATGCAAAAGTGATAC
GCGTGCGTGGAAAAGGGACATAGAAGAATGATTGGCGACTGCCCTTCGTT
TATGATATGATAGTTCTGAGTTGTTTTCTCACTGATGGAAGGGTCTTGCC
TCGAGATTATTGAAGGTAATCAAAAACGAGCTAGCACAGAGTAGGTTACG
TGTCTCTTCGACCGCCCTGTGTACCATGAAAATTCGATTTATCCTCTTCT
CTATGATGAACTTTTCAAAACAAGGCAGAGATCAGAAatgttttcccttt
cttggaAACCTTAGGCCCCCACTTCGCCTCGAAATATTCACGACAAATCC
AAAGATCTTGATGAAGCCGCGTAAATTGAACCTGGGCCACATCTTTGAAT
TTTCGCGTTTCCCCGTTCTTGCTCTTCTCGGATGAAATTTTGTTTTTCCC
CATGTATCAAAGTCCTCTCACGGAGAAAACGAGAAAAGTTCAAAGATTTC
AGTGGTGCTGTACAGGAAGTTATGG

Coding sequence (CDS) from alignment at CM002455.1:878470..882344+

>rna361 ID=rna361|Name=rna361|organism=Nannochloropsis gaditana|type=CDS|length=4776bp|location=Sequence derived from alignment at CM002455.1:878470..882344+ (Nannochloropsis gaditana)
ATGAAATTTTGTGTTACCAGTCCCAATAAATGGTGTTATTGTTTCAAGCC
AACTCATACGAATTCAATCTTGCATACTATCAACACAATAACAGTCAGCA
ATTGGACCATGTGGCAGCATGATAGAGGGCGCCACGGTTCAGCTACAAAA
GGTAATTTCATATCGCTCGCTCGAGGTGACGAAAGTCAGGAATCAAGCGA
CCCGGACGAAGAAAATGTCTTCGATTTAGATGTAGATACCGACTCCAACA
GCGGAAAAGACCTCTATGGAGGAacagagagggagaaggaggcaatggat
gaggaagaagaagacgacgacgaggaggaggaggagggggaggaagagga
ggaagaggaggaagaggaagagggtgggagtggcGATGAGGACAGAGATG
ACCAGGAAGCAGAGCTCCAGGACGTGCGGCGATGGGGAAAGCATAAAAAT
CAGTACTACAGTGCGGATGCTGTAGATTTGGAAATAGGGCAGGATTTCga
agaggcagaagaagaggaagttgCAGCGCGCGAGGTGGAGCAGGCGCGTT
ATgatgaggtggaggagaatgatTATCTAGATGGCTGGAATACAGATAAA
AATATCCTGGTTCAAAAAAATAAATTCATGCGTCCTGAGATCGGGATGCA
TAGTATAACAAAGCCAAACACGCAGTCGATTACTAGTGGGCTGAGCTCGT
GGCAAGAGTCCATGATGGATCAAACCGAGATGGAGATGGCTCAGCTTGAA
CAGGGTTTGTTGACCACAAGCACAGCTGGAAAGCTGCGAATGCTTTCAAC
TAGCTCGCCAGAACTATTGACGTTGCTAGAGGATTTCAAGGACAAGCTGA
GCGAGCTACAGGATCGCGTGGAGCCATTGGCAGAGATGGCGCGAGATGGA
GCTTGTGCAGTGCGCCTGAATGAAGAGGGTGTGGCCTATTTAGAAGTGAA
GCAGCAGTTGCTTCTGAATTATTGTTTGAATTTGACCTATTATCTTCTCC
TGAAAGCTGAAGGCCGTGCTGTGAAAGATCATCCTGTCATTGCACAGCTC
GTAGAGCTTCGTGTCGCGCTGGAAAAGATGAGGCCCCTTGATGCAAAGCT
CAAATACCATCTTGACCGGCTTACGAAGGTCGCTTCTGTCGACGGATCCT
CTAGAATACACGATgaccctctctcctttcggCCAAACCCAGACCTGTTG
GTAGGAAAACGTGGTCAGGACCGAGTGGAGGATGGAAACGGGAAGGATCT
TGACAATACAGAGGGAAATGGCCACAGGGAGGTCTTGtatcgccctcctc
gtcttgctgCTGTACCGTATGGGGAAAAAACGGGGGCTGATGGTGGACGT
GAGAGTAAAAATGAGGCTTTGGCACGCAAGAGACTTGAAAAACTGCGTCG
GTCAGAGCTGCTTCAGACCCTGACTGAGCAATACAGAGACAAGCCCGAAT
TGGTAGCAGAGCATAAATCGCTGGAAAACTCTGTTCAACAGAGAGCAGAT
TacgcagaggaggagcggcgaattttcgaggaggagcgcttTACCCGCCT
AGTAACTTCCCggagggacaagaaggcGCGGAGATTGGCGAATGAGCAAG
CGACGCGGCTAGAGACTATTGCTGATATCGGTGACTTCCATGAACTACAT
GCTTCTCTGAACGCTTTTCAAAACGGTGCTCAAAGCAAAGCATCGTACTC
AGCATCAAATAGTAACGACAGGGAAGTCAAACAAATGAGACAATTGCGGG
ATAAGAAAGACATGAATGCACTTCAAAAGGCGGTGAATTCTATAGCTCAA
AAGGAGCAGATGACGAAACGCCAACGTAATAATGATCTTCATGGAGATAT
TGATTTGCCTCACCGCAATGAATGCGTCCGTAGGGTGCGCCGGGCAACGG
CGTCGATTGATGAAGAGAGAGGCGACATGATCAACTCGGCGAAAATTCCC
ACCAATGCCAGACAAAAAGCAATACAGGTGCATCATGGCGATGCAGACGA
GCAAGTCACCGCGTCGTGTTTACCTCCGGAGCATCCTCTGTACAAGACCG
TGGCAACTTCCAAAAGCAAGCGCAAAGCTGAGAAGGCGGCTCTATACGCA
GTTGAGCCTCAATATGGGGCAGTAGAGGATGGGCTGACGGTCGGTGCgat
gggagagggtgggaaacgCGGAATCAATCATCAAATGCTTAAAAATCGCG
GGCTCACGGCCTACAAGAGTAAACTGAATCGCAATCCTCGTGTGAAGAAG
CGAGAGGCCTACCGTAAGGCTGTGATCAAGCGAAAAGGCCAGGTTCGGGA
CGTCCGGGAATCCGAAGCGGCCCATTATGGCGGTGAAGCAACAGGTATCA
ATGCAAAAGTGATACGCGTGCGTGGAAAAGGGACATAGATGAAATTTTGT
GTTACCAGTCCCAATAAATGGTGTTATTGTTTCAAGCCAACTCATACGAA
TTCAATCTTGCATACTATCAACACAATAACAGTCAGCAATTGGACCATGT
GGCAGCATGATAGAGGGCGCCACGGTTCAGCTACAAAAGGTAATTTCATA
TCGCTCGCTCGAGGTGACGAAAGTCAGGAATCAAGCGACCCGGACGAAGA
AAATGTCTTCGATTTAGATGTAGATACCGACTCCAACAGCGGAAAAGACC
TCTATGGAGGAacagagagggagaaggaggcaatggatgaggaagaagaa
gacgacgacgaggaggaggaggagggggaggaagaggaggaagaggagga
agaggaagagggtgggagtggcGATGAGGACAGAGATGACCAGGAAGCAG
AGCTCCAGGACGTGCGGCGATGGGGAAAGCATAAAAATCAGTACTACAGT
GCGGATGCTGTAGATTTGGAAATAGGGCAGGATTTCgaagaggcagaaga
agaggaagttgCAGCGCGCGAGGTGGAGCAGGCGCGTTATgatgaggtgg
aggagaatgatTATCTAGATGGCTGGAATACAGATAAAAATATCCTGGTT
CAAAAAAATAAATTCATGCGTCCTGAGATCGGGATGCATAGTATAACAAA
GCCAAACACGCAGTCGATTACTAGTGGGCTGAGCTCGTGGCAAGAGTCCA
TGATGGATCAAACCGAGATGGAGATGGCTCAGCTTGAACAGGGTTTGTTG
ACCACAAGCACAGCTGGAAAGCTGCGAATGCTTTCAACTAGCTCGCCAGA
ACTATTGACGTTGCTAGAGGATTTCAAGGACAAGCTGAGCGAGCTACAGG
ATCGCGTGGAGCCATTGGCAGAGATGGCGCGAGATGGAGCTTGTGCAGTG
CGCCTGAATGAAGAGGGTGTGGCCTATTTAGAAGTGAAGCAGCAGTTGCT
TCTGAATTATTGTTTGAATTTGACCTATTATCTTCTCCTGAAAGCTGAAG
GCCGTGCTGTGAAAGATCATCCTGTCATTGCACAGCTCGTAGAGCTTCGT
GTCGCGCTGGAAAAGATGAGGCCCCTTGATGCAAAGCTCAAATACCATCT
TGACCGGCTTACGAAGGTCGCTTCTGTCGACGGATCCTCTAGAATACACG
ATgaccctctctcctttcggCCAAACCCAGACCTGTTGGTAGGAAAACGT
GGTCAGGACCGAGTGGAGGATGGAAACGGGAAGGATCTTGACAATACAGA
GGGAAATGGCCACAGGGAGGTCTTGtatcgccctcctcgtcttgctgCTG
TACCGTATGGGGAAAAAACGGGGGCTGATGGTGGACGTGAGAGTAAAAAT
GAGGCTTTGGCACGCAAGAGACTTGAAAAACTGCGTCGGTCAGAGCTGCT
TCAGACCCTGACTGAGCAATACAGAGACAAGCCCGAATTGGTAGCAGAGC
ATAAATCGCTGGAAAACTCTGTTCAACAGAGAGCAGATTacgcagaggag
gagcggcgaattttcgaggaggagcgcttTACCCGCCTAGTAACTTCCCg
gagggacaagaaggcGCGGAGATTGGCGAATGAGCAAGCGACGCGGCTAG
AGACTATTGCTGATATCGGTGACTTCCATGAACTACATGCTTCTCTGAAC
GCTTTTCAAAACGGTGCTCAAAGCAAAGCATCGTACTCAGCATCAAATAG
TAACGACAGGGAAGTCAAACAAATGAGACAATTGCGGGATAAGAAAGACA
TGAATGCACTTCAAAAGGCGGTGAATTCTATAGCTCAAAAGGAGCAGATG
ACGAAACGCCAACGTAATAATGATCTTCATGGAGATATTGATTTGCCTCA
CCGCAATGAATGCGTCCGTAGGGTGCGCCGGGCAACGGCGTCGATTGATG
AAGAGAGAGGCGACATGATCAACTCGGCGAAAATTCCCACCAATGCCAGA
CAAAAAGCAATACAGGTGCATCATGGCGATGCAGACGAGCAAGTCACCGC
GTCGTGTTTACCTCCGGAGCATCCTCTGTACAAGACCGTGGCAACTTCCA
AAAGCAAGCGCAAAGCTGAGAAGGCGGCTCTATACGCAGTTGAGCCTCAA
TATGGGGCAGTAGAGGATGGGCTGACGGTCGGTGCgatgggagagggtgg
gaaacgCGGAATCAATCATCAAATGCTTAAAAATCGCGGGCTCACGGCCT
ACAAGAGTAAACTGAATCGCAATCCTCGTGTGAAGAAGCGAGAGGCCTAC
CGTAAGGCTGTGATCAAGCGAAAAGGCCAGGTTCGGGACGTCCGGGAATC
CGAAGCGGCCCATTATGGCGGTGAAGCAACAGGTATCAATGCAAAAGTGA
TACGCGTGCGTGGAAAAGGGACATAG

Synonyms

Publications