rna3608, rna3608 (mRNA) Nannochloropsis gaditana

Overview
Namerna3608
Unique Namerna3608
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length870
Alignment locationCM002461.1:800055..800817 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100194g8.7130.mrna
Orig protein idgnl|cribi|Naga_100194g8.7130
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:800055..800817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100194g8gene3475Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3608rna3608-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27078.1cds3599Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3608 ID=rna3608|Name=rna3608|organism=Nannochloropsis gaditana|type=mRNA|length=870bp
AACAAATCTAGGGGTTGGTTCCTATGGAAACTCCGATTCAGCATGCGAGG
CAATCATGTACCATCGCAAACCTTGTATCCAGCATTTTGGCACTTTTCTC
ATCAACTCTACTCTACCAAGGTTTCCGAATAGAGGGGAATCGATTGGTTT
CCCTTCAAAGACCTGTCATTATGACTTATCGACCGGCCAAGGTTGTATCT
ATGAGTGTTTTTCCAGCCATGTCCTTAGGCTGGATTGCTTTGGCAATATA
TTTTGCCCAACCACAATTGAAAGGATTCCAGGGCAGAGAGATAGACCATG
CTACATTCTCAGTCATGCAGCGTCAATGTGGTATAATTGTCCACAGAGTC
AATATTGCACGCATGCTTTGTAGCGTATTTTCTGTTTTATTTTTGTGGCG
ACTGTCCATTTTTTTCCACGAGCTAGGAAAGTCGACCATAGCGGCGGATG
GCTCCCGGGAGGAAGTAGAGAAGTGGTTTACATACACAAAATTAATGACA
GGCATGGGATTATCAGCGGCGCTATTGAACACCTATCTATATCATCGACT
GGTGCTATCCCATAGACGTCTTAAGCAAGCGCTCCGCTTGCGCTTCCGTC
GATCAATGTGATCCCCGCGATATCGATTTCATGAAAAAACTAAAAAATGA
AGAGCTAGAAGAAATTAGTCATAGGTGATTTTTTCTGATTCTATACGCAC
ACTCCATGATGATGGTTCTAGGGAGATTTCTCAAATCAATCGAGTGTTCT
TCTGAAAATAAAATGATCGATCGGGCGTTCGGGCGACGGGCAAGGCATGC
CCAAACAAGCGAATATCGCTGGCAAAATTTTGTCGCATTTGTCATTCTTG
ATTACCACATGAAAGAATTA
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protein sequence of rna3608

>rna3608-protein ID=rna3608-protein|Name=rna3608|organism=Nannochloropsis gaditana|type=polypeptide|length=158bp
MASSLPSRVQYTSTQAFLMQEQQGPVPSVSSTWGDPYHHQQYQQQRQQQQ
QQQPQQHQQQPQQGFHPMHFQHQPQQYPYMPPLIGQARFWPSVGDIRCDG
DSPERLGGGGESTEALMYACGGSRHRKKGARAAEKSLVQGQRTWRVEKEK
GRPRSKAS
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mRNA from alignment at CM002461.1:800055..800817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3608 ID=rna3608|Name=rna3608|organism=Nannochloropsis gaditana|type=mRNA|length=763bp|location=Sequence derived from alignment at CM002461.1:800055..800817- (Nannochloropsis gaditana)
ATGGCGTCCTCCCTGCCCTCTCGGGTCCAATACACCAGCACTCAAGCCTT
CCTGATGCAGGAGCAGCAGGGGCCGGTGCCGTCGGTCTCAAGCACGTGGG
GCGACCCCTACCATCACCAGCAGTATCAGCAACAACGCCAGCAACAGCAG
CAGCAGCAGCCACAACAACACCAACAACAACCACAACAAGGTTTCCACCC
TATGCACTTCCAACATCAACCCCAGCAGTATCCCTACATGCCCCCGTATC
CGCCTCCTGGCCCCGGGGGGGGGGGCAACGGAGGGGGATATCTGTAAAGG
AGAGATGGGGGAATGGAGGGGGTTTGGCGAGGTTGTAAAGTGCAGGAGAA
AAAAGGCGTTTGCGAGGGAGTGGGGAGGAAGCGAGCGAAAGAAAAGGGGG
AGGGCAAAGCACGGCGAGTGTTTGAGCGGAATGCACCGCACATGAGGAGA
CGCGTGGGGTACGAGAAAAAGGTCAGGGGCAGGGAGTCAAAAGCGGAGGA
GCGGTAGTGAGGACGTCATGGGAAGCTGAAGACTGATTGGACAGGCCCGG
TTTTGGCCGAGCGTGGGAGACATACGATGCGATGGCGATTCTCCTGAACG
GCTGGGAGGGGGAGGGGAGAGCACAGAGGCCCTGATGTATGCATGTGGGG
GCTCGAGGCACAGGAAGAAAGGTGCGAGGGCAGCGGAGAAATCGCTGGTA
CAGGGTCAGAGGACATGGCGCGTCGAGAAAGAAAAAGGGCGCCCGAGGTC
AAAAGCCTCCTGA
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Coding sequence (CDS) from alignment at CM002461.1:800055..800817-

>rna3608 ID=rna3608|Name=rna3608|organism=Nannochloropsis gaditana|type=CDS|length=954bp|location=Sequence derived from alignment at CM002461.1:800055..800817- (Nannochloropsis gaditana)
ACTGATTGGACAGGCCCGGTTTTGGCCGAGCGTGGGAGACATACGATGCG
ATGGCGATTCTCCTGAACGGCTGGGAGGGGGAGGGGAGAGCACAGAGGCC
CTGATGTATGCATGTGGGGGCTCGAGGCACAGGAAGAAAGGTGCGAGGGC
AGCGGAGAAATCGCTGGTACAGGGTCAGAGGACATGGCGCGTCGAGAAAG
AAAAAGGGCGCCCGAGGTCAAAAGCCTCCTGAATGGCGTCCTCCCTGCCC
TCTCGGGTCCAATACACCAGCACTCAAGCCTTCCTGATGCAGGAGCAGCA
GGGGCCGGTGCCGTCGGTCTCAAGCACGTGGGGCGACCCCTACCATCACC
AGCAGTATCAGCAACAACGCCAGCAACAGCAGCAGCAGCAGCCACAACAA
CACCAACAACAACCACAACAAGGTTTCCACCCTATGCACTTCCAACATCA
ACCCCAGCAGTATCCCTACATGCCCCCACTGATTGGACAGGCCCGGTTTT
GGCCGAGCGTGGGAGACATACGATGCGATGGCGATTCTCCTGAACGGCTG
GGAGGGGGAGGGGAGAGCACAGAGGCCCTGATGTATGCATGTGGGGGCTC
GAGGCACAGGAAGAAAGGTGCGAGGGCAGCGGAGAAATCGCTGGTACAGG
GTCAGAGGACATGGCGCGTCGAGAAAGAAAAAGGGCGCCCGAGGTCAAAA
GCCTCCTGAATGGCGTCCTCCCTGCCCTCTCGGGTCCAATACACCAGCAC
TCAAGCCTTCCTGATGCAGGAGCAGCAGGGGCCGGTGCCGTCGGTCTCAA
GCACGTGGGGCGACCCCTACCATCACCAGCAGTATCAGCAACAACGCCAG
CAACAGCAGCAGCAGCAGCCACAACAACACCAACAACAACCACAACAAGG
TTTCCACCCTATGCACTTCCAACATCAACCCCAGCAGTATCCCTACATGC
CCCC
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Synonyms
Publications