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Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF4336 |
| Orig transcript id | gnl|cribi|Naga_100194g12.7131.mrna |
| Orig protein id | gnl|cribi|Naga_100194g12.7131 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:795111..796754 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3605 ID=rna3605|Name=rna3605|organism=Nannochloropsis gaditana|type=mRNA|length=781bp
CAGGCTCTGCTTGATTAAATGAACATTTCTCCATCAAACAAATTGTTATA
CATCACAGGCATTTACCATGCTTGGACACGCGGGCCTAGGCCTCCGTCGT
TGGGTCGGCAATGCGGTCAAATTTACAACAAAGCCTGATGCTATTAGCTT
TCCTCCATGCCGCACCCTCACTTGCACCAGCAGAAGCCTCGCCGCCTTCG
TGTCCACCTTTGACGGAAGCAGTTCCCTCGTTTTTCCCGATTGTAATCGA
GCTTCATTGCGACATCACCATCACCATGGCAGTCCCTTGATGGCCTTCTC
AAGAGGGTTTTCCACCCCCCGAGAGAGCCCTGCCGCCGATCTCGACGTCC
CTGCAGAAAGTATTCAAGGGGAAGATGAAGTGCTGGAAAATCCCAAGCCT
CCCCGTAACTCCTTGGTGGGTGTGGTTATCTCGGACAAGATGGATAAGTC
GATAGTTGTCAAGGTGTCACGGCTCAAACTTTATTTGCCGTATATGGTAC
GGAAGAAGGCAATTAAAAAAATCATGGCTCATGACGAGGAGAATGAGTGT
GGGATGGGTGACACGGTGCGTATCAAGCCCTCGCGGCCGTTGAGCAAGAG
AAAGCGATTTGTCTTGCACGAGGTGATTCGTAGGAACCCAAAGTTGACGA
TATGAAAGGATTCAGGCTGGGAACTGCGGACGACTTATAGACTAGCAAGA
GAGGAGTGCCTATATATTTGTAACAGGCTTGCTTGCCACCGTTCTTCGAT
ATAACAAAACCAATAACGAAGCTTGTAACCT back to topprotein sequence of rna3605 >rna3605-protein ID=rna3605-protein|Name=rna3605|organism=Nannochloropsis gaditana|type=polypeptide|length=484bp
MHKPPRYCPHVRAAFSAFVLLLFLSPLISAYKPSTGTKATIDPATRAPSR
NRATPTTPVRNSKPNPLATLFEVYTRGSGDNAGVASDSPEEIRLRKERQY
TLITGLPLKPYFERRTVRRQIAKDIWTFEQPQGFFNVTTPIRMTVIRLSD
GRLWVHAPVAATAECRRLVDELGGQVAYIVLPTTAFEHKVFVGGFARAYP
AAKVYACPGQWSWPINLPPPFRVDAYLTDPRASSDGNKGKGGGTAQTPWA
NEIEHMVFEPPCIGIGPANEVVFLHKASRTLLVTDLVVYIDGDSPSPVVE
VPDLLKASWDDPDAVPPGAPLPPDTPANRRKGWARMALQILFLGPTRFST
FKLVQRRLLVSPVIETFVYSKIPDALVDFVDRIATTWDFTTVLPAHFNAP
APGSPTALQDAFAFAYRLTGRRPSPARRMAGGTEGRGSNPFLALWDRVME
GAREGKRTEEYPEDDTAVLRFVNGFILKAGIANK back to topmRNA from alignment at CM002461.1:795111..796754+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3605 ID=rna3605|Name=rna3605|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp|location=Sequence derived from alignment at CM002461.1:795111..796754+ (Nannochloropsis gaditana)
TTTTAGAGAAAAACGTCACTCTtattttccctttctcctccgatCATGAA
GCCCATCACATGCATAAGCCACCAAGATATTGCCCGCATGTCCGCGCCGC
ATTTTCTGCTTTTGTATTGCTCCTATTTCTCAGTCCCTTGATCTCTGCCT
ACAAGCCTTCAACCGGAACAAAAGCTACAATAGACCCTGCTACAAGAGCA
CCGTCCAGAAATAGGGCGACCCCAACCACGCCCGTCCGAAACAGCAAACC
CAACCCACTGGCAACACTTTTTGAAGTATACACTCGCGGCAGTGGTGACA
ATGCGGGCGTCGCTTCCGATAGTCCTGAGGAGATCCGCCTGCGGAAAGAG
AGGCAATACACGCTGATCACAGGGCTCCCACTGAAGCCTTATTTTGAAAG
GCGCACCGTCCGAAGACAAATCGCCAAGGATATTTGGACCTTTGAGCAGC
CCCAAGGTTTCTTCAACGTGACCACTCCTATCCGCATGACGGTAATCCGG
CTTTCCGATGGTCGGCTGTGGGTGCACGCACCCGTCGCTGCAACAGCCGA
GTGTCGGCGGCTCGTGGACGAGCTTGGCGGTCAAGTTGCCTATATTGTCC
TACCTACCACTGCCTTTGAGCACAAAGTCTTTGTGGGCGGGTTTGCGCGG
GCATACCCTGCGGCCAAAGTGTACGCGTGTCCAGGACAGTGGTCATGGCC
GATcaaccttccccctcctttccgcgtCGACGCCTACCTGACAGACCCTC
GAGCCAGCAGCGACGGGAACAAGGGTAAAGGCGGCGGAACGGCCCAGACC
CCCTGGGCAAATGAGATCGAGCACATGGTGTTCGAACCGCCCTGCATCGG
GATCGGCCCCGCCAACGaggtcgtcttcctccacaagGCTTCACGGACCC
TGCTGGTCACGGACCTGGTCGTCTATATCGACGGAGACTCCCCGTCcccc
gtggtggaggtgccCGACCTCCTCAAAGCCTCCTGGGATGACCCGGACGC
GgtcccccccggcgccccgcttccccctgacACCCCGGCGAACCGGCGCA
AAGGCTGGGCGCGCATGGCCCTCCagatcctcttcctcgggccCACGCGG
TTCTCCACCTTCAAGCTTGTTCAGCGTCGCCTGCTGGTCTCCCCAGTGAT
CGAAACCTTCGTCTACTCCAAAATTCCAGACGCGTTGGTGGACTTTGTGG
ATCGGATCGCGACGACCTGGGACTTCACCACTGTCCTGCCCGCCCACTTC
AacgccccggcccccggctcccccaccgccctccaggACGCCTTCGCCTT
TGCTTACAGACTcacggggcggaggccgtCTCCGGCACGACGAATGGcgg
ggggaacggagggaagaggctcGAACCCGTTCCTGGCGCTTTGGGACAGa
gtgatggagggggcccgtgaagggaagaggacggaagaatacccggagga
tgACACGGCTGTGCTACGGTTCGTGAACGGCTTCATTTTGAAAGCAGGCA
TCGCGAATAAGTAGAGCCGCGTCATcgacgggcgagggaggaattCAGAT
CGTACAGGTGTCTTGAAATAAGataagaaaagagagaatcGCCGAGCGAG
ATACATTGTTTCTCTGTCACCAAAACTTAGTGTGTTCTTTTTCC back to topCoding sequence (CDS) from alignment at CM002461.1:795111..796754+ >rna3605 ID=rna3605|Name=rna3605|organism=Nannochloropsis gaditana|type=CDS|length=1455bp|location=Sequence derived from alignment at CM002461.1:795111..796754+ (Nannochloropsis gaditana)
ATGCATAAGCCACCAAGATATTGCCCGCATGTCCGCGCCGCATTTTCTGC
TTTTGTATTGCTCCTATTTCTCAGTCCCTTGATCTCTGCCTACAAGCCTT
CAACCGGAACAAAAGCTACAATAGACCCTGCTACAAGAGCACCGTCCAGA
AATAGGGCGACCCCAACCACGCCCGTCCGAAACAGCAAACCCAACCCACT
GGCAACACTTTTTGAAGTATACACTCGCGGCAGTGGTGACAATGCGGGCG
TCGCTTCCGATAGTCCTGAGGAGATCCGCCTGCGGAAAGAGAGGCAATAC
ACGCTGATCACAGGGCTCCCACTGAAGCCTTATTTTGAAAGGCGCACCGT
CCGAAGACAAATCGCCAAGGATATTTGGACCTTTGAGCAGCCCCAAGGTT
TCTTCAACGTGACCACTCCTATCCGCATGACGGTAATCCGGCTTTCCGAT
GGTCGGCTGTGGGTGCACGCACCCGTCGCTGCAACAGCCGAGTGTCGGCG
GCTCGTGGACGAGCTTGGCGGTCAAGTTGCCTATATTGTCCTACCTACCA
CTGCCTTTGAGCACAAAGTCTTTGTGGGCGGGTTTGCGCGGGCATACCCT
GCGGCCAAAGTGTACGCGTGTCCAGGACAGTGGTCATGGCCGATcaacct
tccccctcctttccgcgtCGACGCCTACCTGACAGACCCTCGAGCCAGCA
GCGACGGGAACAAGGGTAAAGGCGGCGGAACGGCCCAGACCCCCTGGGCA
AATGAGATCGAGCACATGGTGTTCGAACCGCCCTGCATCGGGATCGGCCC
CGCCAACGaggtcgtcttcctccacaagGCTTCACGGACCCTGCTGGTCA
CGGACCTGGTCGTCTATATCGACGGAGACTCCCCGTCccccgtggtggag
gtgccCGACCTCCTCAAAGCCTCCTGGGATGACCCGGACGCGgtcccccc
cggcgccccgcttccccctgacACCCCGGCGAACCGGCGCAAAGGCTGGG
CGCGCATGGCCCTCCagatcctcttcctcgggccCACGCGGTTCTCCACC
TTCAAGCTTGTTCAGCGTCGCCTGCTGGTCTCCCCAGTGATCGAAACCTT
CGTCTACTCCAAAATTCCAGACGCGTTGGTGGACTTTGTGGATCGGATCG
CGACGACCTGGGACTTCACCACTGTCCTGCCCGCCCACTTCAacgccccg
gcccccggctcccccaccgccctccaggACGCCTTCGCCTTTGCTTACAG
ACTcacggggcggaggccgtCTCCGGCACGACGAATGGcggggggaacgg
agggaagaggctcGAACCCGTTCCTGGCGCTTTGGGACAGagtgatggag
ggggcccgtgaagggaagaggacggaagaatacccggaggatgACACGGC
TGTGCTACGGTTCGTGAACGGCTTCATTTTGAAAGCAGGCATCGCGAATA
AGTAG back to top
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