rna3598, rna3598 (mRNA) Nannochloropsis gaditana

Overview
Namerna3598
Unique Namerna3598
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3446
Alignment locationCM002461.1:781014..782371 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100046g47.5164.mrna
Orig protein idgnl|cribi|Naga_100046g47.5164
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:781014..782371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g47gene3465Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3598rna3598-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27125.1cds3589Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3598 ID=rna3598|Name=rna3598|organism=Nannochloropsis gaditana|type=mRNA|length=3446bp
GCATCACAGGCAGTCATGTTGCACGCTTTCTGACCCGGAGGAAGAGGACG
TTATATTCGATTGGTACCTCCCCGTTCCCGCGCAGCACCCTATGCACTCC
CTCACAGCTTTTTCTATTCACCGTCTCACAGCTCAAAACGACCAATCGAG
TGGAGTTGTGTCGTCAGACTTTTTTGATCGTTATAATCGGGACCCTTGGG
TGGCGGCTTTCCGTGGTACAGTCCTAGCTCGGGAAAACCCAGGTTTTCCG
CTCATCGCTTCTTGGCAGGGCAAAAGTCATGTCGGGTAAACGCACGAGAA
GACCGGTTCAAAAACTAGGGGATTTCGAGGAAGTAGACAGCGTGTCCTCT
CTGGCCGGTGTTGCTCCTGATGCAGGCTCTGTGGTCTCCCACGCTACCGG
CAGCCGGGCCCACCAGCGACAACAGCATCAACGGGCCGGTCGCGCAAACA
AGAAGCGCGACGACAGGAGTGCCTTGGTGGAGGTGTGGATGTGCAAGAAC
GAGTCCGGGAACAAACCCTCTACGGCCATCAAGGAGGAATACGCTCAACA
GCTCCGCATTCGCAAGGACGGGTTTTGGGACACGATGAAAGCCTACGCGC
TCAAATCGAAGCTGGCATGCCTGCCTGACTTTGAGCAGATATGGCACCAC
ATGAAAGACGACAAATCCGACCTCCTCCAGGACCTTCGACTGCAAGGCGT
TGACTTCTGGTGGGAGCAAGAGGAGGACGAGCAGGGGGTGGTTTTTTATA
AGCCCAACACGCAGAACCTGAAGAACTTCAAGCCAGCCTCGGGCTTGCTC
CACCACTTCTATCAGGTCTACATCCACGACTCTAGGAACTACGAAACTGT
CCGGCACAATCCCAGGGCAACAGGCTCCCGTTTCCGCACGGATCCCGAGG
AGCTGGACGACCTGGTTGCCAAGCTGAGCCCTTTCCGCGTCCTCCCTGAG
CCCAAGGCCCTGCTCGTGCTGCCCAACTCGACCGCTCCCCTCCACCAAAG
CCTGCGGGGCACGTATGCCCTGGGCAAGAAGGTGAACAACCACAACGTGT
TCTTCAGGCCTGCCCGTCAGGTGGCGAAAGGAAAAGGGACCGACTTTCGG
AGCGTGATTTTGAACGGGGCGACAGTGGACGTGCCGGCGGGCAAGGAAGA
AAACTACGCTCTTGTCGTGAACGCGCTGTCCGTGCTGTGCAAGGAGGAGC
GAAAGGACGAGGGCGAGTCGGAGGTTTTCCAGGACGTTCCCTTCCGCATG
CGGGTGCCCCCGGAGGGGGCGGAGGAGGGTCCGGGGCGCGAGGCGGGGGT
GCTGACGACGACGATCGAGGACCTGGGGGAGAACATGTTCGACCTGACCA
CCGACGTGGGCGTCATGGTCTATCCGGTGCGAGGCCTCCTGCCCATCCCC
GAGATAATGCGCTTCATCGATTTCGGGGCGGTCTGGCAGGGTTGTTTCTC
CCCCTTCCCGCGGACGGCCGCCTCGTTTCAGGAGTTTGTGGCGCAGTTCA
GCGCCTTCCCCGAGACGTGCCTGAGCTTCTTTTTCTACGGCGGGGACAGT
GCGGGGGGACGCACCAGGGGCGAGGAGGCTGTCGGTGGTAGACGCAAGGA
CGTGCTGGCGGAAGACTATATCCGTTTCATGACCTGGTTCGCGAACTTCG
ACGACGGTCTCGGCCAGGCCTGCTGCAATGCCTGGGCGCTGTACAAGGCC
TTGGAGGGCGTTCCCTTCTACCTCTCGAGCCAGAGCGAGGACCTGCGGGC
CGTCCGTCAAGCGGGGATGTATGCAGTGCGGCTGTCGGACACGAAGCCTC
AGTGCCTGACTGTGGAAGTCTGGCAGCAGGCGGAGGTGGAGGCAGTGGAG
GAGGAGGACGGCGTGGGCGCAGCGACGTCGGCGGCGGTGGAAGGGACTGT
TCTTTGCTTCAGAGTCCGGGTGACGTACAACCACCCTGCGGGCGGGGCAG
CAAAGAAGGCAACCGCCTTGAGCACCGCGGACGGGGTGGTATTGCCTCAA
GTGCAATTTTCCTTGGAGGACGCAGTGGGAAAGGTGTCAGTGACGAGCAG
GAATCGGCTTGCTGGCCCCGTGCTGAAGAAGATCGAGCAACAGACACGCT
TGCCGGCTGGCATGTCACTGACGCCGCTCTTGTTCTCCGAGGACGCGCGG
GAGCTTCACGGGCCAAGAAGCGGAGGGGAGGACGCAACGGGGCTGGGGCG
AGGAATGAGTGGGAGCTCGACGAGCTCGACAGGGGCCGGTGGACGAGGTC
GGCGGAACAACATGGGCCCTCCGGCGGCCCCAATTCCAACAGATGAATCG
CGGACAGGGTCAAGGAATAGGGGCAAAGCGGGCACTGCGGCAGCCGGCGG
GGCAGAGTTGCGGTCCCAGACACACAAGCGAAAGAGAGGAGGTGGTGAAG
ACAGGTCCTTGCCCCCTCCGCTCTCGAAAATGGGTACGGCGGGGGCGTCG
GCTTTCAATGACGAGACTTTTGATATCAACGGTGCCAAGCAGTTGGCCGC
CGCGCAAATTAAGCGAGAGGTGAGCAACGTCTTACCTTCGGCGGAGGGAG
AGGGGTCGAGGAGTATCGATATGCCACCCGCCATCTCCGCGGGTTTGACG
GGAAGCAGCAGTGGCAGCAACGGCGCGCCTCTGAACATGTGGGGCCAGCA
CATCCCCATGCCTACTGTGGGCCGCGACCACTCGTTGGCGCCGCCGCCCA
TGATGTCGGGCAACTCGCTCACAGGTGGGGGTTCTGGCGGTGGAGGGGCG
AGTGGAGGCCTGAGACAAGAATCGATAGGGAAGGGTGACTCGTGGGGGTC
GGTACTCAAAAATATTGACGACCTCTCTCCCCCTGGAGTCAATCGGGAGC
ATTCTCTGGCTTTGGGCCTCCCCGGCTTCTCACGGGACATGTCGATGGGT
TCCCTGAGCGATTTCCCTCGTCTCTCTCGGGGCCCGTCGCAGTACGACGA
GAGCCTCGGGGGAGCGGGGGAGGAGGGGGGAGGGAAAAGCGGAAACTGAT
GGCGTTGAAAGAAATGGGTCGGGAAGTACAGATTGAAAATTGAATGCGTG
ATACGATTGGCAGATCTCACGATCGGCTATCGTGGGACCGAGCTGAGGGC
ATCGATGTCGAAAAGATTGGAGCAAGACCATTGAAGTATATCTTGAATGA
GACAGCGTTGGGTATTTCTGTGTAGATCTTCGCTCTTGCGAAAAAACTGT
ACTGTCGAATGACTATCTTTCGGTCTTGTCAGAAGAGTATCCCCGCATTG
TCTCGCGTGGATTTCAGCAGGGGAGCAAGCGGAGCGAGGCAACAAGCCTC
CCACCATTGTTCTTGGGGCCTGCACTGAAGACAGCCCGAAAATGTATGTA
TATATCAAGCCAAAAACGATCAAATCAACGACAAGAATGAGTAAAACAGG
GAGTAACCAACATTACATTTTGAGAAGCAACTTATTTGTATCGACC
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protein sequence of rna3598

>rna3598-protein ID=rna3598-protein|Name=rna3598|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
MILEDAAHITFSVTTHTLKKLRGFQAPGTCSGVLKLYMAEAARQCFHGSG
FSIRVPKRIDDITEFVAGCLGHVNVLIKVRGAATCLANAPQQKRQSHNIE
IATLDQQFYPQTLAVGCKDKICFALAW
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mRNA from alignment at CM002461.1:781014..782371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3598 ID=rna3598|Name=rna3598|organism=Nannochloropsis gaditana|type=mRNA|length=1358bp|location=Sequence derived from alignment at CM002461.1:781014..782371+ (Nannochloropsis gaditana)
AGCTGCTGTAATCTCGTGGCTAGCAATGCGAACCGATTCGTGTCCCCCCT
GTCCACTACCACATGCGTCACGCCCGCATGGAGGCTATCGCTCACTTCAC
CGCCATGGAGGCGGATGATTGCATCGTAGTGATCTAGTTTGGTTACAGGC
AAGGAACGTTTGCAACTTCCGTGCACTTCCAGGACCTCCTTGACTGGGTC
AGAATCTATAGCTATCGGTCCCACGTCCTCGAAACGGTCAAGATAGACCG
TGCATCCGCCAAAGACATCCAAGGGATGATTCTGGAAGATGCTGCGCACA
TCACATTCTCTGTCACTACGCACACGCTGAAGAAGCTGAGAGGATTTCAA
GCCCCGGGGACCTGCTCTGGTGTGTTGAAGCTTTATATGGCGGAAGCAGC
GAGACAGTGCTTTCACGGAAGTGGTTTCTCCATAAGGGTCCCCAAACGCA
TCGACGACATCACTGAATTTGTCGCGGGTTGCCTGGGTCATGTAAATGTA
CTCATCAAAGTGAGGGGGGCTGCAACGTGTCTGGCGAATGCACCGCAGCA
AAAAAGGCAATCCCACAATATCGAAATTGCCACTCTTGATCAGCAGTTTT
ACCCGCAAACTCTTGCTGTCGGGTGCAAGGATAAAATCTGTTTTGCCCTG
GCGTGGTGAGCATGTAAGGGTTCCACCGTTGGCTACAACCATTTCTTCTA
CCTCATTTTTCGAGAGGCAGCGATTATCGTCCGCACTGCTCCTGGATACT
GCAGCAAAGTCTTCAGCACGCTCATCTTGGCTGCCAAATTGATCAGCACG
ATCAGCACTGCCTGTCGAACCCTCATCTGAGGTAGGCGGTGGAAGTGTGA
AATTTCCTATGATACAAAACTCTATCCCCTGTAACATGTTCCTTTCCACC
GGTATTGTGTCCGATAAAATGGTTTTGTAACTGCCGACGACGCGAACGGG
TGGTGCTTTTTGCCTGTTGCGTGCATCTGTGCTTGCAGAATGACGGAACG
ACATTGATGGAGTCGACGGTGGGGATGGTGGTAGCGGTGCAGTTGGATAT
GTAACATACATGGATGAATGTGGACGCACGTTACGCGTCTCTGCCGTGGG
TTTGCGCGTTGGAGATTCAAAGATTTCTTTCAGCTCGGTCTGTGTTAAAC
ATTCTGACCATGTTTTATCGTGGCGCACTGCCTCGATGCGTGGAAATCTG
AGAGTCAGACCGGAGGAGAAATCGCTGCTTTCGTTTATCTCGGCGCACTT
GAGCTCAAGAATCACCGATTCACTGGGCTCAATGACAAAATCAGGTATAT
TCCGCCGGGATGGTCTCCATGGTTTAAAGTAAGACGGTAAGCGGAGACCT
CCTCGCCA
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Coding sequence (CDS) from alignment at CM002461.1:781014..782371+

>rna3598 ID=rna3598|Name=rna3598|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at CM002461.1:781014..782371+ (Nannochloropsis gaditana)
ATGATTCTGGAAGATGCTGCGCACATCACATTCTCTGTCACTACGCACAC
GCTGAAGAAGCTGAGAGGATTTCAAGCCCCGGGGACCTGCTCTGGTGTGT
TGAAGCTTTATATGGCGGAAGCAGCGAGACAGTGCTTTCACGGAAGTGGT
TTCTCCATAAGGGTCCCCAAACGCATCGACGACATCACTGAATTTGTCGC
GGGTTGCCTGGGTCATGTAAATGTACTCATCAAAGTGAGGGGGGCTGCAA
CGTGTCTGGCGAATGCACCGCAGCAAAAAAGGCAATCCCACAATATCGAA
ATTGCCACTCTTGATCAGCAGTTTTACCCGCAAACTCTTGCTGTCGGGTG
CAAGGATAAAATCTGTTTTGCCCTGGCGTGGTGA
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Synonyms
Publications