rna359, rna359 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna359
Unique Name	rna359
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	408
Alignment location	CM002455.1:874275..876208 +

Link to JBrowse

Properties


Property Name	Value
Product	elongation protein 3
Orig transcript id	gnl\|cribi\|Naga_100003g137.1743.mrna
Orig protein id	gnl\|cribi\|Naga_100003g137.1743
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:874275..876208 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g137	gene346	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna359	rna359-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30226.1	cds359	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:874275..876208+
coding sequence from alignment at CM002455.1:874275..876208+

mRNA sequence

>rna359 ID=rna359|Name=rna359|organism=Nannochloropsis gaditana|type=mRNA|length=408bp
ATGGATCCCGCGTGCTTCAACCTCCCCCGGCCCTCAAGACTCGAGCCCGG
CCCCAGCCAACCTCCTCCCCCGGCCCCAGCGATCTCGCTCCCACCGCTCC
CACTCGCAGCCCTCTGTTGTACAAATACTTGTTGCAACTATGAGAGTATT
TTAATTGTATGTGACATTCTGATCCTGGTAGAGCAAGCCGACAAATCTGG
GCGAATCCTCCGGGAGTCAAGAAGACGGAGATGGATTTCTACTTTAATGC
TTCATATTACCGTTTTTCATCCATGTTCAATGTGTGCTGTACGCAGTCGT
TTTGATATTGGCATCCATGAAACACAAAATATTTTCCGTCAAAGGGATAT
GTGTGATGCTTGTCCTGTGTATACCCGCTTTATCGCACCTACGAAGTTGT
TGATGTAG

protein sequence of rna359

>rna359-protein ID=rna359-protein|Name=rna359|organism=Nannochloropsis gaditana|type=polypeptide|length=626bp
MASSICTHPISIMPPNHSDIDQAQNRLSPAYLSCVAELVKELMHAFDARV
PTNLTRLTADLARKRKLKIMPRLMDIIAAVPEEYRDKLLPFIKSKPVRTA
SGIAVVAVMCKPHRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTS
MRAIRARYHPYAQTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLSEDYKDW
FIRNLHDALSGHSSGSVAEAVAYMEHSESKCIGITIETRPDFCLKPHLNE
MLSYGCTRIEIGVQSIYEDVARDTNRGHTVHAVCNSFQLAKECGFKVVTH
MMPDLPNMGMERDLLGFREFFENPLFRADGLKIYPTLVIRGTGLYELWKT
GQYKNYTPDELIDLMAKILSLVPPWTRIYRIQRDIPMPLVTAGVENGNLR
ELALRRMAELDLPCRDVRTREVGIRQIHQSARPHEIELVRRDYTANGGWE
TFLSYEDPHQDILIGLLRLRRPSAVTFRPEILNNFSSVVRELHVYGSAVP
LHDRDPNKFQHQGYGRLLMEEAERIAKHEHGSAKIVVIAGVGTRNYYRKL
GYELEGPYMSKYLQKGNRPPKWPTTVKFPTLTLFRFSAHHIVLFNVNIMT
TSYQVQTDYKEVSRHKFHSFLVPKGI

mRNA from alignment at CM002455.1:874275..876208+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna359 ID=rna359|Name=rna359|organism=Nannochloropsis gaditana|type=mRNA|length=1934bp|location=Sequence derived from alignment at CM002455.1:874275..876208+ (Nannochloropsis gaditana)
ATGGCGTCTAGTATTTGTACACACCCTATCAGCATCATGCCGCCCAATCA
TTCGGATATAGACCAAGCACAGAATCGCCTTTCGCCCGCTTACCTCAGTT
GCGTTGCAGAGCTTGTCAAGGAATTGATGCATGCGTTTGACGCCCGAGTT
CCTACGAATTTGACAAGGTTAACAGCCGATTTAGCACGGAAGCGGAAACT
GAAAATCATGCCTCGTTTGATGGACATCATTGCTGCTGTCCCTGAGGAAT
ACAGGGATAAGTTGTTGCCTTTCATTAAATCGAAGCCGGTTCGTACGGCC
TCTGGTATCGCCGTCGTAGCAGTCATGTGCAAGCCTCACCGTTGTCCTCA
TATTGCGATGACTGGCAACGTCTGTGTATATTGTCCCGGCGGACCTGACT
CGGATTTTGAATACTCCACACAAGCCTATACTGGCTATGAGCCTACAAGT
ATGCGGGCCATTAGGGCGCGTTATCACCCGTATGCCCAGACGCGTGGGCG
GGTGGATCAACTTAAACGTTTGGGTCACAGCGTTGACAAGGTAGAATTTA
TCGTCATGGGTGGTACATTCATGTCCTTGAGCGAGGATTACAAAGACTGG
TTTATCCGCAATCTTCATGATGCTCTCTCTGGTCATTCGTCGGGCAGTGT
GGCCGAAGCTGTCGCCTACATGGAGCATAGCGAAAGTAAATGCATTGGTA
TTACTATCGAGACTAGGCCAGATTTTTGTCTTAAACCACATTTGAACGAG
ATGCTATCTTACGGCTGTACTCGCATCGAAATCGGAGTTCAGAGCATTTA
TGAGGACGTGGCTCGAGACACAAACCGAGGTCACACTGTTCACGCCGTGT
GTAACTCATTTCAACTGGCAAAGGAGTGCGGGTTCAAGGTCGTGACACAC
ATGATGCCAGATCTACCCAACATGGGCATGGAGAGGGATCTTTTAGGTTT
CCGCGAATTTTTTGAGAACCCTTTGTTCCGAGCAGATGGCTTGAAAATAT
ATCCTACTCTTGTTATCCGAGGCACAGGTTTATATGAGCTTTGGAAAACA
GGACAATACAAAAATTATACTCCCGACGAACTCATAGATTTGATGGCAAA
GATCTTATCTCTTGTCCCACCTTGGACTCGTATTTACCGTATCCAACGGG
ATATCCCAATGCCTCTCGTCACTGCCGGTGTTGAGAATGGTAATCTTAGA
GAGTTGGCGTTGCGCCGGATGGCTGAACTCGATCTTCCTTGTCGAGACGT
CCGGACGCGCGAAGTAGGTATTCGTCAAATTCATCAAAGTGCTCGCCCAC
ATGAGATTGAGCTTGTTCGTCGTGACTATACGGCAAATGGCGGATGGGAA
ACTTTTCTGAGCTACGAAGATCCTCACCAAGACATCCTTATTGGGTTGCT
ACGTCTCCGAAGGCCTAGCGCTGTTACATTTCGTCCTGAGATCCTGAACA
ATTTCTCTTCCGTTGTAAGGGAGCTGCATGTCTACGGCTCAGCCGTTCCC
TTACACGATAGAGATCCAAATAAATTTCAACACCAAGGTTACGGCAGGCT
TCTtatggaggaggcagaacgCATTGCCAAACATGAGCATGGTTCTGCGA
AGATAGTAGTGATAGCAGGAGTAGGAACTAGAAATTATTATCGCAAGCTC
GGATATGAACTGGAAGGGCCTTACATGAGTAAGTACTTGCAAAAAGGCAA
CAGACCACCCGTAGAGTATCAAGCGGGCAAAATGCATATCGATGGATTGG
AAATGGATGAAAGAAATGGCCTACAACTGTGAAATTTCCAACATTAACCT
TGTTTAGATTCAGCGCGCATCACATTGTCTTATTTAATGTGAATATCATG
ACTACAAGTTATCAGGTTCAAACTGACTACAAAGAAGTCAGTCGTCACAA
ATTTCATTCATTTTTAGTGCCAAAAGGTATTTGA

Coding sequence (CDS) from alignment at CM002455.1:874275..876208+

>rna359 ID=rna359|Name=rna359|organism=Nannochloropsis gaditana|type=CDS|length=3762bp|location=Sequence derived from alignment at CM002455.1:874275..876208+ (Nannochloropsis gaditana)
ATGGCGTCTAGTATTTGTACACACCCTATCAGCATCATGCCGCCCAATCA
TTCGGATATAGACCAAGCACAGAATCGCCTTTCGCCCGCTTACCTCAGTT
GCGTTGCAGAGCTTGTCAAGGAATTGATGCATGCGTTTGACGCCCGAGTT
CCTACGAATTTGACAAGGTTAACAGCCGATTTAGCACGGAAGCGGAAACT
GAAAATCATGCCTCGTTTGATGGACATCATTGCTGCTGTCCCTGAGGAAT
ACAGGGATAAGTTGTTGCCTTTCATTAAATCGAAGCCGGTTCGTACGGCC
TCTGGTATCGCCGTCGTAGCAGTCATGTGCAAGCCTCACCGTTGTCCTCA
TATTGCGATGACTGGCAACGTCTGTGTATATTGTCCCGGCGGACCTGACT
CGGATTTTGAATACTCCACACAAGCCTATACTGGCTATGAGCCTACAAGT
ATGCGGGCCATTAGGGCGCGTTATCACCCGTATGCCCAGACGCGTGGGCG
GGTGGATCAACTTAAACGTTTGGGTCACAGCGTTGACAAGGTAGAATTTA
TCGTCATGGGTGGTACATTCATGTCCTTGAGCGAGGATTACAAAGACTGG
TTTATCCGCAATCTTCATGATGCTCTCTCTGGTCATTCGTCGGGCAGTGT
GGCCGAAGCTGTCGCCTACATGGAGCATAGCGAAAGTAAATGCATTGGTA
TTACTATCGAGACTAGGCCAGATTTTTGTCTTAAACCACATTTGAACGAG
ATGCTATCTTACGGCTGTACTCGCATCGAAATCGGAGTTCAGAGCATTTA
TGAGGACGTGGCTCGAGACACAAACCGAGGTCACACTGTTCACGCCGTGT
GTAACTCATTTCAACTGGCAAAGGAGTGCGGGTTCAAGGTCGTGACACAC
ATGATGCCAGATCTACCCAACATGGGCATGGAGAGGGATCTTTTAGGTTT
CCGCGAATTTTTTGAGAACCCTTTGTTCCGAGCAGATGGCTTGAAAATAT
ATCCTACTCTTGTTATCCGAGGCACAGGTTTATATGAGCTTTGGAAAACA
GGACAATACAAAAATTATACTCCCGACGAACTCATAGATTTGATGGCAAA
GATCTTATCTCTTGTCCCACCTTGGACTCGTATTTACCGTATCCAACGGG
ATATCCCAATGCCTCTCGTCACTGCCGGTGTTGAGAATGGTAATCTTAGA
GAGTTGGCGTTGCGCCGGATGGCTGAACTCGATCTTCCTTGTCGAGACGT
CCGGACGCGCGAAGTAGGTATTCGTCAAATTCATCAAAGTGCTCGCCCAC
ATGAGATTGAGCTTGTTCGTCGTGACTATACGGCAAATGGCGGATGGGAA
ACTTTTCTGAGCTACGAAGATCCTCACCAAGACATCCTTATTGGGTTGCT
ACGTCTCCGAAGGCCTAGCGCTGTTACATTTCGTCCTGAGATCCTGAACA
ATTTCTCTTCCGTTGTAAGGGAGCTGCATGTCTACGGCTCAGCCGTTCCC
TTACACGATAGAGATCCAAATAAATTTCAACACCAAGGTTACGGCAGGCT
TCTtatggaggaggcagaacgCATTGCCAAACATGAGCATGGTTCTGCGA
AGATAGTAGTGATAGCAGGAGTAGGAACTAGAAATTATTATCGCAAGCTC
GGATATGAACTGGAAGGGCCTTACATGAGTAAGTACTTGCAAAAAGGCAA
CAGACCACCCAAATGGCCTACAACTGTGAAATTTCCAACATTAACCTTGT
TTAGATTCAGCGCGCATCACATTGTCTTATTTAATGTGAATATCATGACT
ACAAGTTATCAGGTTCAAACTGACTACAAAGAAGTCAGTCGTCACAAATT
TCATTCATTTTTAGTGCCAAAAGGTATTTGAATGGCGTCTAGTATTTGTA
CACACCCTATCAGCATCATGCCGCCCAATCATTCGGATATAGACCAAGCA
CAGAATCGCCTTTCGCCCGCTTACCTCAGTTGCGTTGCAGAGCTTGTCAA
GGAATTGATGCATGCGTTTGACGCCCGAGTTCCTACGAATTTGACAAGGT
TAACAGCCGATTTAGCACGGAAGCGGAAACTGAAAATCATGCCTCGTTTG
ATGGACATCATTGCTGCTGTCCCTGAGGAATACAGGGATAAGTTGTTGCC
TTTCATTAAATCGAAGCCGGTTCGTACGGCCTCTGGTATCGCCGTCGTAG
CAGTCATGTGCAAGCCTCACCGTTGTCCTCATATTGCGATGACTGGCAAC
GTCTGTGTATATTGTCCCGGCGGACCTGACTCGGATTTTGAATACTCCAC
ACAAGCCTATACTGGCTATGAGCCTACAAGTATGCGGGCCATTAGGGCGC
GTTATCACCCGTATGCCCAGACGCGTGGGCGGGTGGATCAACTTAAACGT
TTGGGTCACAGCGTTGACAAGGTAGAATTTATCGTCATGGGTGGTACATT
CATGTCCTTGAGCGAGGATTACAAAGACTGGTTTATCCGCAATCTTCATG
ATGCTCTCTCTGGTCATTCGTCGGGCAGTGTGGCCGAAGCTGTCGCCTAC
ATGGAGCATAGCGAAAGTAAATGCATTGGTATTACTATCGAGACTAGGCC
AGATTTTTGTCTTAAACCACATTTGAACGAGATGCTATCTTACGGCTGTA
CTCGCATCGAAATCGGAGTTCAGAGCATTTATGAGGACGTGGCTCGAGAC
ACAAACCGAGGTCACACTGTTCACGCCGTGTGTAACTCATTTCAACTGGC
AAAGGAGTGCGGGTTCAAGGTCGTGACACACATGATGCCAGATCTACCCA
ACATGGGCATGGAGAGGGATCTTTTAGGTTTCCGCGAATTTTTTGAGAAC
CCTTTGTTCCGAGCAGATGGCTTGAAAATATATCCTACTCTTGTTATCCG
AGGCACAGGTTTATATGAGCTTTGGAAAACAGGACAATACAAAAATTATA
CTCCCGACGAACTCATAGATTTGATGGCAAAGATCTTATCTCTTGTCCCA
CCTTGGACTCGTATTTACCGTATCCAACGGGATATCCCAATGCCTCTCGT
CACTGCCGGTGTTGAGAATGGTAATCTTAGAGAGTTGGCGTTGCGCCGGA
TGGCTGAACTCGATCTTCCTTGTCGAGACGTCCGGACGCGCGAAGTAGGT
ATTCGTCAAATTCATCAAAGTGCTCGCCCACATGAGATTGAGCTTGTTCG
TCGTGACTATACGGCAAATGGCGGATGGGAAACTTTTCTGAGCTACGAAG
ATCCTCACCAAGACATCCTTATTGGGTTGCTACGTCTCCGAAGGCCTAGC
GCTGTTACATTTCGTCCTGAGATCCTGAACAATTTCTCTTCCGTTGTAAG
GGAGCTGCATGTCTACGGCTCAGCCGTTCCCTTACACGATAGAGATCCAA
ATAAATTTCAACACCAAGGTTACGGCAGGCTTCTtatggaggaggcagaa
cgCATTGCCAAACATGAGCATGGTTCTGCGAAGATAGTAGTGATAGCAGG
AGTAGGAACTAGAAATTATTATCGCAAGCTCGGATATGAACTGGAAGGGC
CTTACATGAGTAAGTACTTGCAAAAAGGCAACAGACCACCCAAATGGCCT
ACAACTGTGAAATTTCCAACATTAACCTTGTTTAGATTCAGCGCGCATCA
CATTGTCTTATTTAATGTGAATATCATGACTACAAGTTATCAGGTTCAAA
CTGACTACAAAGAAGTCAGTCGTCACAAATTTCATTCATTTTTAGTGCCA
AAAGGTATTTGA

Synonyms

Publications