rna3587, rna3587 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3587
Unique Name	rna3587
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3758
Alignment location	CM002461.1:755866..757265 -

Link to JBrowse

Properties


Property Name	Value
Product	malonyl- :acp transacylase
Orig transcript id	gnl\|cribi\|Naga_100046g34.5134.mrna
Orig protein id	gnl\|cribi\|Naga_100046g34.5134
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:755866..757265 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g34	gene3454	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27095.1	cds3578	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3587	rna3587-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:755866..757265-
coding sequence from alignment at CM002461.1:755866..757265-

mRNA sequence

>rna3587 ID=rna3587|Name=rna3587|organism=Nannochloropsis gaditana|type=mRNA|length=3758bp
ACAGGCATGGCTATGTCTTTTTTTGAATGCTTAGAGGCAAGGGTGAAGTC
GGTGGACTCGTTGCTTTGCGTCGGACTCGACCCTCATGGTGCACAGCTTC
AGGAAGCAACAGGTGCGGCTGCATATAAATTCTGCAAGCGGCTCATTGAG
GCAACGGCGCCCTACGCAGCCGCGTACAAGCCAAACATAGCTTTTTTCGA
GGCCCTCGGAACTGAGGGGTGGCAAGCTTTGCTGGAGGTTGTGCAATCAG
TCCCGTCTGACATACCTGTCATTTTGGATGCGAAACGTGGGGATATTAGT
ACTACGGCAGATGCGTACGCAACCGCGTGTTTCAAAAGCGTCGGGGCTAC
CGGCGTAACCCTGCATGGGTACATGGGCGTGGATTCCGTGGCTCCGTTTA
TGAGAGACCCTCACGCTGGCGCTTTCATATTGTGCAAAACCTCGAACCCG
TCCTCGGCAGACTTCCAAACAATTCCTTGCTCTCTCTCTACCATTGGTAG
TGGTTGCCAGTCACGAGTGCTGCCATGGCTACTATACGAGGAGGTGGCAC
GCCGGGCAGGGGAATGGGGCACTCAGTACCAAGACCGGATAGGCCTTGTT
GTCGGCGCGACTGATCCTGATGCTTTGAAACGTGTTCGTGCCATAGTACC
AGATATGTGGATTTTGGCTCCGGGCATCGGCGCTCAAGGAGGGGATTTGA
TAGGGGCGTGTGCGGCGGGTCTGTCCAAGGGAGCAAGCAAATTGCTCTTA
CCCATCTCGCGAGGCATCTCACAGGCACGCGACCCGGCCGAGGCGGCCGA
AGCTTTTCGAGTGGCCATCAACGTCGCCCGGAAGCAAGCGCGATCGCAAG
TGGACATGAGCAATGTGGAATCGCTTGTGGAAGCGCCTCGAGGGGGTGCT
TTAAAATCTTTTCAATCGGACTTTATCCGCTTCGCCCTCGACAGTGAGGT
GCTGCTCTTAGGCTCATTCACTCTCAAGTCTGGCCGCGTTTCGCCCTATT
TCTTCAACGCCGGCAAGTTCACATCAGGGCTTGCGCTGAAAAAACTCAGT
CACTTCTACGCTCGGACGCTTCTGGAAAGCGGCTTGGTGTTCGATGTCCT
TTTCGGGCCGGCCTACAAGGGGATCACCTTAGCGTCGGCGGTAGCGGTCG
CCCTAGGAGAGCTGACTGGGCGCGATGTGCCCTTTGCTTACGACCGAAAA
GAGGCGAAGGACCACGGGGAGGGGGGCAGATTAGTGGGTGCCGCCCTGTC
CGGGAAGCGGGTGGTGATCGTCGACGACGTGATTACGGCGGGCACGGCCA
TCCGCGAGAGCATGCAGCTCTTGACGTCCGTCCAGGCAGAGGTGGTTGGC
GTCGCGCTGGCACTAGACCGGCAGGAGCGAGGAACCGATTCCCCGCTTTC
GGCGGTGCAGTCCGTTGAGCAGCAGTACGGTGTCCAAGTCTTGAGCGTGG
TTGGTTTGCGGGAATTGTTGGAGTTTTTCATGGAGAAAGCCGGAAATGGA
AAGGCGGGGGATGGGGAAAAGGAGGCTCTCGAAGCCATTCGTGAGTATCG
GGCTCAGTACGGGGTGGCTCCCTTGCAGGCGTGAGACCTTTCGAGCACGC
GACGGTCAGGTTGTCGCCGTAAGGCATTTCCCTAAGCCAAAAGGAACATG
AAGTGTAGCGCAAACAAAAGTATACTCGGCTATTCTTGACGCACTCGGAC
TGCTTTGTTGATGGTGGCCAGCTCACCGAAAGGACCCGACGACGGGCAAC
CAGGGGGATGCCCCCTTGCTTACAGCACATGTCACTAGCACACCAGGCTT
CACTTAGACGACACAGAAAAAACAGAGAGCACACTTAATTAGTCCACTGC
TTATCCTTCCAAGCTTGTTCCTCATCCTCCCGCAAACGATTTCCAGTTTG
CTCCCGGTCGCCGGCTCAGGCCTCGATGTTCACCATCTTCGCTTTTCGGT
CGATGCGCTTGAGAATCCCGGCACAAACCTTGCCAGGCCCCAGTTCATAG
CCCGTTTCAAGCCCACCTTTGACCAGGTCGTTCATGGTGGTCTCCCACTG
CACCGGCGAAGTCACCTGTTTGGCGAGAATGGCCTTGATTTCCTCAGGGT
CCGAATGGGGCTTCCCATCCACATTGGAAATGACTGGGATACGCGGCGTC
TTGAACTCTGTCTTGGCCAAGACCTCCTTTAGTTTTTCCAGGGCGGGAGC
CATGTACTCCGTGTGGAAGGCGCCGGCCACGGCCAGACGCACTGTCATTC
GGGCCCCGAACTCCGGCTTGGCGATCTCCTCCAGCACCTGCGCCGCTTTC
AAGCTTCCAGATACCGCGTAGTTCCCAGGGCACAGGTAGTTGGCAATTTG
TATCTTCTCTCCAGATTTGGAGGAAGCTGCGGCACAAAGCTCGTTCACCT
TGTCCGCCTCCAAACCGATGACGCTTACCATGGTCGTGTCCACCAGGTCG
GCGGCGGCTTGCATGGCTTCCCCTCTGGCCTTTGTCAGGCGCACACCGTC
CTCGAATGAAAAGGCTCCTGCGTAACACAATGCCGAGTATTCCCCTAAAG
ATAGACCCATCGCGACGGTGGCGGCATTCGCCGCGTCTTCGCCCTCTGTG
GCCCGAAGTTTCTCGACTGCGGCAGCCGAGGCGACGAAGATGGCGGGCTG
GCTTACCGCCGTGGAGTCCAATAAGTCCTTCGGTCCATTCATTGCTCGAT
CCAGTAGATCGTATCCTAGGATCTCGCTGGCTTTTTCAAACAGAGCTTTG
GCTGCGGGCACCTCCTCGCTGACCTGTGCTCCCATTCCCACATACTGGGC
CCCCTGGCCAGGGAACATGAATGCGGTTTTGTAATCCACAGCAGAAGCCT
TGACCAGGTTCTTGCGTGCATGTGAGGAAATAGCCCGGGAGAGCACATTT
GTTGAAAGCTTGGGGACAAAAGCAAAGGCTGTTGGGCTCAATAAGCCAAG
CATAATTAGGCTCTTGGACATCATTCCTGTGCGCAACGAGATTGAGTAGG
AATCGTTGAGGACGTCGAATGCCAAAAGTACGGAATCAATTCGAATGACA
GAGCAGTACAGCTAGCAAAAAAGCCATAGAAGAAGTGTTTGAAATGCTGG
CATTCCACTTTCGAATGCAGCTTTCCTGACAAAAATCAGCATCAGGCAGA
GGAAGGCAGTGAACGATCCACGTGTGACGAATGAGACTTTCTGGCTACGA
CGGGGTCGGACAGCTGCGGGCCGTCGACACACGTGCCAGCCTTGCAACCT
GTGAGTCTACGGCACAATTCTTAGTACGCCCTCGCGTCAAATTTATTGTA
CATGGATTCAACATGTGAACAATAATAATAAGGGCGGACTGATGTTGTTG
GAACATCACAGGGTAGGCATGAAATCCACGTGAGCGATAAGCGGTGCTGA
AAGCAAGATCTAGCTAGCGGTGTATGTCGTCGTCGCATACTATAGCTGCT
TATGGTCCTTGGGACGAGACAGTTTCGTGTCTAGACGCAAAAGCTGCTGA
GTATGCAAACGAAATATGATTTTGTAGGCTGGGTCATGATTTTGCTGCTT
TTTCCTCAATCTAGACTTCCTTTGGTCCCGAACAATGCCGCATGGTCAGG
AGGTCGGTGATGTCCGCATAATGCTCTCCCCTGCACGTCGAAAAAGAAGC
CTGAACGACATCTTGTTTGTCACCCCATCAAGTAGGAAGCGGTCGACTTT
TTTCGCCGTTTTACGTCCTGACTAGCTTTGATGCACCAGAAAAGACTCAA
AAGTGAGA

protein sequence of rna3587

>rna3587-protein ID=rna3587-protein|Name=rna3587|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MMSKSLIMLGLLSPTAFAFVPKLSTNVLSRAISSHARKNLVKASAVDYKT
AFMFPGQGAQYVGMGAQVSEEVPAAKALFEKASEILGYDLLDRAMNGPKD
LLDSTAVSQPAIFVASAAAVEKLRATEGEDAANAATVAMGLSLGEYSALC
YAGAFSFEDGVRLTKARGEAMQAAADLVDTTMVSVIGLEADKVNELCAAA
SSKSGEKIQIANYLCPGNYAVSGSLKAAQVLEEIAKPEFGARMTVRLAVA
GAFHTEYMAPALEKLKEVLAKTEFKTPRIPVISNVDGKPHSDPEEIKAIL
AKQVTSPVQWETTMNDLVKGGLETGYELGPGKVCAGILKRIDRKAKMVNI
EA

mRNA from alignment at CM002461.1:755866..757265-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3587 ID=rna3587|Name=rna3587|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp|location=Sequence derived from alignment at CM002461.1:755866..757265- (Nannochloropsis gaditana)
CATTCGACGTCCTCAACGATTCCTACTCAATCTCGTTGCGCACAGGAATG
ATGTCCAAGAGCCTAATTATGCTTGGCTTATTGAGCCCAACAGCCTTTGC
TTTTGTCCCCAAGCTTTCAACAAATGTGCTCTCCCGGGCTATTTCCTCAC
ATGCACGCAAGAACCTGGTCAAGGCTTCTGCTGTGGATTACAAAACCGCA
TTCATGTTCCCTGGCCAGGGGGCCCAGTATGTGGGAATGGGAGCACAGGT
CAGCGAGGAGGTGCCCGCAGCCAAAGCTCTGTTTGAAAAAGCCAGCGAGA
TCCTAGGATACGATCTACTGGATCGAGCAATGAATGGACCGAAGGACTTA
TTGGACTCCACGGCGGTAAGCCAGCCCGCCATCTTCGTCGCCTCGGCTGC
CGCAGTCGAGAAACTTCGGGCCACAGAGGGCGAAGACGCGGCGAATGCCG
CCACCGTCGCGATGGGTCTATCTTTAGGGGAATACTCGGCATTGTGTTAC
GCAGGAGCCTTTTCATTCGAGGACGGTGTGCGCCTGACAAAGGCCAGAGG
GGAAGCCATGCAAGCCGCCGCCGACCTGGTGGACACGACCATGGTAAGCG
TCATCGGTTTGGAGGCGGACAAGGTGAACGAGCTTTGTGCCGCAGCTTCC
TCCAAATCTGGAGAGAAGATACAAATTGCCAACTACCTGTGCCCTGGGAA
CTACGCGGTATCTGGAAGCTTGAAAGCGGCGCAGGTGCTGGAGGAGATCG
CCAAGCCGGAGTTCGGGGCCCGAATGACAGTGCGTCTGGCCGTGGCCGGC
GCCTTCCACACGGAGTACATGGCTCCCGCCCTGGAAAAACTAAAGGAGGT
CTTGGCCAAGACAGAGTTCAAGACGCCGCGTATCCCAGTCATTTCCAATG
TGGATGGGAAGCCCCATTCGGACCCTGAGGAAATCAAGGCCATTCTCGCC
AAACAGGTGACTTCGCCGGTGCAGTGGGAGACCACCATGAACGACCTGGT
CAAAGGTGGGCTTGAAACGGGCTATGAACTGGGGCCTGGCAAGGTTTGTG
CCGGGATTCTCAAGCGCATCGACCGAAAAGCGAAGATGGTGAACATCGAG
GCCTGAGCCGGCGACCGGGAGCAAACTGGAAATCGTTTGCGGGAGGATGA
GGAACAAGCTTGGAAGGATAAGCAGTGGACTAATTAAGTGTGCTCTCTGT
TTTTTCTGTGTCGTCTAAGTGAAGCCTGGTGTGCTAGTGACATGTGCTGT
AAGCAAGGGGGCATCCCCCTGGTTGCCCGTCGTCGGGTCCTTTCGGTGAG
CTGGCCACCATCAACAAAGCAGTCCGAGTGCGTCAAGAATAGCCGAGTAT
ACTTTTGTTTGCGCTACACTTCATGTTCCTTTTGGCTTAGGGAAATGCCT

Coding sequence (CDS) from alignment at CM002461.1:755866..757265-

>rna3587 ID=rna3587|Name=rna3587|organism=Nannochloropsis gaditana|type=CDS|length=1059bp|location=Sequence derived from alignment at CM002461.1:755866..757265- (Nannochloropsis gaditana)
ATGATGTCCAAGAGCCTAATTATGCTTGGCTTATTGAGCCCAACAGCCTT
TGCTTTTGTCCCCAAGCTTTCAACAAATGTGCTCTCCCGGGCTATTTCCT
CACATGCACGCAAGAACCTGGTCAAGGCTTCTGCTGTGGATTACAAAACC
GCATTCATGTTCCCTGGCCAGGGGGCCCAGTATGTGGGAATGGGAGCACA
GGTCAGCGAGGAGGTGCCCGCAGCCAAAGCTCTGTTTGAAAAAGCCAGCG
AGATCCTAGGATACGATCTACTGGATCGAGCAATGAATGGACCGAAGGAC
TTATTGGACTCCACGGCGGTAAGCCAGCCCGCCATCTTCGTCGCCTCGGC
TGCCGCAGTCGAGAAACTTCGGGCCACAGAGGGCGAAGACGCGGCGAATG
CCGCCACCGTCGCGATGGGTCTATCTTTAGGGGAATACTCGGCATTGTGT
TACGCAGGAGCCTTTTCATTCGAGGACGGTGTGCGCCTGACAAAGGCCAG
AGGGGAAGCCATGCAAGCCGCCGCCGACCTGGTGGACACGACCATGGTAA
GCGTCATCGGTTTGGAGGCGGACAAGGTGAACGAGCTTTGTGCCGCAGCT
TCCTCCAAATCTGGAGAGAAGATACAAATTGCCAACTACCTGTGCCCTGG
GAACTACGCGGTATCTGGAAGCTTGAAAGCGGCGCAGGTGCTGGAGGAGA
TCGCCAAGCCGGAGTTCGGGGCCCGAATGACAGTGCGTCTGGCCGTGGCC
GGCGCCTTCCACACGGAGTACATGGCTCCCGCCCTGGAAAAACTAAAGGA
GGTCTTGGCCAAGACAGAGTTCAAGACGCCGCGTATCCCAGTCATTTCCA
ATGTGGATGGGAAGCCCCATTCGGACCCTGAGGAAATCAAGGCCATTCTC
GCCAAACAGGTGACTTCGCCGGTGCAGTGGGAGACCACCATGAACGACCT
GGTCAAAGGTGGGCTTGAAACGGGCTATGAACTGGGGCCTGGCAAGGTTT
GTGCCGGGATTCTCAAGCGCATCGACCGAAAAGCGAAGATGGTGAACATC
GAGGCCTGA

Synonyms

Publications