rna3586, rna3586 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3586
Unique Name	rna3586
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	477
Alignment location	CM002461.1:754168..758002 +

Link to JBrowse

Properties


Property Name	Value
Product	orotidine-5-monophosphate decarboxylase and orotate phosphoribosyl
Orig transcript id	gnl\|cribi\|Naga_100046g33.5130.mrna
Orig protein id	gnl\|cribi\|Naga_100046g33.5130
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:754168..758002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g33	gene3453	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3586	rna3586-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27091.1	cds3577	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:754168..758002+
coding sequence from alignment at CM002461.1:754168..758002+

mRNA sequence

>rna3586 ID=rna3586|Name=rna3586|organism=Nannochloropsis gaditana|type=mRNA|length=477bp
ATGATACTTTTTGTGCGAACATTTGATGTTAAAACAGCACCGAAGCGCAT
TTTTGAGGGCGAGCTTGGAGTGTCTTTTTGCAACCGCCTTGTAAGATGCA
TGTGCGGGCAAACTCTCAGAAAAGCAACTTGCTTGATCGTGCGCCCAAGA
ACTAAATGGCGACAGCCCTCAGCGGAGAAAAATACGCACCGAAGGGGGCA
GCTTGTGAGATTAGTCTGGGACATTATGTCTGCGATATTCGATTTCTCCA
GCCTGATCACCGTTGTCCTTCTCTTCATCGTCACCTGCACATACCTGCGC
GGGTTCCGCTCTACCATTTTTGATAACGCTCCCTCCGCGGACGGGGCGAT
CAATCGGCACGAGGGCCTCTTGGGTTTCTGCTGGAAAGCGTCGCGGATTG
GTGAGCGGAAGAGTGAATGGGTCGGCCTAGCTTGTGTGGGCATGGCGGTG
CACGTGCTGTTTTTCAAAAAAAATTGA

protein sequence of rna3586

>rna3586-protein ID=rna3586-protein|Name=rna3586|organism=Nannochloropsis gaditana|type=polypeptide|length=525bp
MAMSFFECLEARVKSVDSLLCVGLDPHGAQLQEATGAAAYKFCKRLIEAT
APYAAAYKPNIAFFEALGTEGWQALLEVVQSVPSDIPVILDAKRGDISTT
ADAYATACFKSVGATGVTLHGYMGVDSVAPFMRDPHAGAFILCKTSNPSS
ADFQTIPCSLSTIGSGCQSRVLPWLLYEEVARRAGEWGTQYQDRIGLVVG
ATDPDALKRVRAIVPDMWILAPGIGAQGGDLIGACAAGLSKGASKLLLPI
SRGISQARDPAEAAEAFRVAINVARKQARSQVDMSNVESLVEAPRGGALK
SFQSDFIRFALDSEVLLLGSFTLKSGRVSPYFFNAGKFTSGLALKKLSHF
YARTLLESGLVFDVLFGPAYKGITLASAVAVALGELTGRDVPFAYDRKEA
KDHGEGGRLVGAALSGKRVVIVDDVITAGTAIRESMQLLTSVQAEVVGVA
LALDRQERGTDSPLSAVQSVEQQYGVQVLSVVGLRELLEFFMEKAGNGKA
GDGEKEALEAIREYRAQYGVAPLQA

mRNA from alignment at CM002461.1:754168..758002+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3586 ID=rna3586|Name=rna3586|organism=Nannochloropsis gaditana|type=mRNA|length=3835bp|location=Sequence derived from alignment at CM002461.1:754168..758002+ (Nannochloropsis gaditana)
ACAGGCATGGCTATGTCTTTTTTTGAATGCTTAGAGGCAAGGGTGAAGTC
GGTGGACTCGTTGCTTTGCGTCGGACTCGACCCTCATGGTGCACAGGTAA
GCCGACACCTCTCCCGACGGCCGCCACAAAGTCCTCACTCACCAAGGCTG
TGCACACGTACACACTCATATAGCTTCAGGAAGCAACAGGTGCGGCTGCA
TATAAATTCTGCAAGCGGCTCATTGAGGCAACGGCGCCCTACGCAGCCGC
GTACAAGCCAAACATAGCTTTTTTCGAGGCCCTCGGAACTGAGGGGTGGC
AAGCTTTGCTGGAGGTTGTGCAATCAGTCCCGTCTGACATACCTGTCATT
TTGGATGCGAAACGTGGGGATATTAGTACTACGGCAGATGCGTACGCAAC
CGCGTGTTTCAAAAGCGTCGGGGCTACCGGCGTAACCCTGCATGGGTACA
TGGGCGTGGATTCCGTGGCTCCGTTTATGAGAGACCCTCACGCTGGCGCT
TTCATATTGTGCAAAACCTCGAACCCGTCCTCGGCAGACTTCCAAACAAT
tccttgctctctctctACCATTGGTAGTGGTTGCCAGTCACGAGTGCTGC
CATGGCTACTATACGAGGAGGTGGCACGCCGGGCAGGGGAATGGGGCACT
CAGTACCAAGACCGGATAGGCCTTGTTGTCGGCGCGACTGATCCTGATGC
TTTGAAACGTGTTCGTGCCATAGTACCAGATATGTGGATTTTGGCTCCGG
GCATCGGCGCTCAAGGAGGGGATTTGATAGGGGCGTGTGCGGCGGGTCTG
TCCAAGGGAGCAAGCAAATTGCTCTTACCCATCTCGCGAGGCATCTCACA
GGCACGCGACCCGGCCGAGGCGGCCGAAGCTTTTCGAGTGGCCATCAACG
TCGCCCGGAAGCAAGCGCGATCGCAAGTGGACATGAGCAATGTGGAATCG
CTTGTGGAAGCGCCTCGAGGGGGTGCTTTAAAATCTTTTCAATCGGACTT
TATCCGCTTCGCCCTCGACAGTGAGGTGCTGCTCTTAGGCTCATTCACTC
TCAAGTCTGGCCGCGTTTCGCCCTATTTCTTCAACGCCGGCAAGTTCACA
TCAGGGCTTGCGCTGAAAAAACTCAGTCACTTCTACGCTCGGACGCTTCT
GGAAAGCGGCTTGGTGTTCGATGTCCTTTTCGGGCCGGCCTACAAGGGGA
TCACCTTAGCGTCGGCGGTAGCGGTCGCCCTAGGAGAGCTGACTGGGCGC
GATGTGCCCTTTGCTTACGACCgaaaagaggcgaaggaccacggggaggg
gggcagatTAGTGGGTGCCGCCCTGTCCGGGAAGCGGGTGGTGATCGTCG
ACGACGTGATTACGGCGGGCACGGCCATCCGCGAGAGCATGCAGCTCTTG
ACGTCCGTCCAGGCAGAGGTGGTTGGCGTCGCGCTGGCACTAGACCGGCA
GGAGCGAGGAACCGATTCCCCGCTTTCGGCGGTGCAGTCCGTTGAGCAGC
AGTACGGTGTCCAAGTCTTGAGCGTGGTTGGTTTGCGGGAATTGTTGGAG
TTTTTCATGGAGAAAGCCGGAAatggaaaggcgggggatggggaaaagga
ggctcTCGAAGCCATTCGTGAGTATCGGGCTCAGTACGGGGTGGCTCCCT
TGCAGGCGTGAGACCTTTCGAGCACGCGACGGTCAGGTTGTCGCCGTAAG
GCATTTCCCTAAGCCAAAAGGAACATGAAGTGTAGCGCAAACAAAAGTAT
ACTCGGCTATTCTTGACGCACTCGGACTGCTTTGTTGATGGTGGCCAGCT
CACCGAAAGGACCCGACGACGGGCAACCAGGGGGATGCCCCCTTGCTTAC
AGCACATGTCACTAGCACACCAGGCTTCACTTAGACGACACAGAAAAAAC
AGAGAGCACACTTAATTAGTCCACTGCTTATCCTTCCAAGCTtgttcctc
atcctcccgcaAACGATTTCCAGTTTGCTCCCGGTCGCCGGCTCAGGCCT
CGATGTTCACCATCTTCGCTTTTCGGTCGATGCGCTTGAGAATCCCGGCA
CAAACCTTGCCAGGCCCCAGTTCATAGCCCGTTTCAAGCCCACCTTTGAC
CAGGTCGTTCATGGTGGTCTCCCACTGCACCGGCGAAGTCACCTGTTTGG
CGAGAATGGCCTTGATTTCCTCAGGGTCCGAATGGGGCTTCCCATCCACA
TTGGAAATGACTGGGATACGCGGCGTCTTGAACTCTGTCTTGGCCAAGAC
CTCCTTTAGTTTTTCCAGGGCGGGAGCCATGTACTCCGTGTGGAAGGCGC
CGGCCACGGCCAGACGCACTGTCATTCGGGCCCCGAACTCCGGCTTGgcg
atctcctccagcacctgcgCCGCTTTCAAGCTTCCAGATACCGCGTAGTT
CCCAGGGCACAGGTAGTTGGCAATTTGTATCTTCTCTCCAGATTTGGAGG
AAGCTGCGGCACAAAGCTCGTTcaccttgtccgcctccaaaCCGATGACG
CTTACCATGGTCGTGTCCACCAGGTCGGCGGCGGCTTGCATGGCTTCCCC
TCTGGCCTTTGTCAGGCGCACACCGTCCTCGAATGAAAAGGCTCCTGCGT
AACACAATGCCGAGTATTCCCCTAAAGATAGACCCATCGCGACGGTGGCG
GCATTCGCCGCGTCTTCGCCCTCTGTGGCCCGAAGTTTCTCGACTGCGGC
AGCCGAGGCGACGAAGATGGCGGGCTGGCTTACCGCCGTGGAGTCCAATA
AGTCCTTCGGTCCATTCATTGCTCGATCCAGTAGATCGTATCCTAGGATC
TCGCTGGCTTTTTCAAACAGAGCTTTGGCTGCGGGCACCTCCTCGCTGAC
CTGTGCTCCCATTCCCACATACTGGGCCCCCTGGCCAGGGAACATGAATG
CGGTTTTGTAATCCACAGCAGAAGCCTTGACCAGGTTCTTGCGTGCATGT
GAGGAAATAGCCCGGGAGAGCACATTTGTTGAAAGCTTGGGGACAAAAGC
AAAGGCTGTTGGGCTCAATAAGCCAAGCATAATTAGGCTCTTGGACATCA
TTCCTGTGCGCAACGAGATTGAGTAGGAATCGTTGAGGACGTCGAATGCC
AAAAGTACGGAATCAATTCGAATGACAGAGCAGTACAGCTAGCAAAAAAG
CCATAGAAGAAGTGTTTGAAATGCTGGCATTCCACTTTCGAATGCAGCTT
TCCTGACAAAAATCAGCATCaggcagaggaaggcagTGAACGATCCACGT
GTGACGAATGAGACTTTCTGGCTACGACGGGGTCGGACAGCTGCGGGCCG
TCGACACACGTGCCAGCCTTGCAACCTGTGAGTCTACGGCACAATTCTTA
GTACGCCCTCGCGTCAAATTTATTGTACATGGATTCAACATGTGAACAAT
AATAATAAGGGCGGACTGATGTTGTTGGAACATCACAGGGTAGGCATGAA
ATCCACGTGAGCGATAAGCGGTGCTGAAAGCAAGATCTAGCTAGCGGTGT
ATGTCGTCGTCGCATACTATAGCTGCTTATGGTCCTTGGGACGAGACAGT
TTCGTGTCTAGACGCAAAAGCTGCTGAGTATGCAAACGAAATATGATTTT
GTAGGCTGGGTCATGATTTTGCTGCTTTTTCCTCAATCTAGACTTCCTTT
GGTCCCGAACAATGCCGCATGGTCAGGAGGTCGGTGATGTCCGCATAATG
CTCTCCCCTGCACGTCGAAAAAGAAGCCTGAACGACATCTTGTTTGTCAC
CCCATCAAGTAGGAAGCGGTCGACTTTTTTCGCCGTTTTACGTCCTGACT
AGCTTTGATGCACCAGAAAAGACTCAAAAGTGAGA

Coding sequence (CDS) from alignment at CM002461.1:754168..758002+

>rna3586 ID=rna3586|Name=rna3586|organism=Nannochloropsis gaditana|type=CDS|length=3156bp|location=Sequence derived from alignment at CM002461.1:754168..758002+ (Nannochloropsis gaditana)
ATGGCTATGTCTTTTTTTGAATGCTTAGAGGCAAGGGTGAAGTCGGTGGA
CTCGTTGCTTTGCGTCGGACTCGACCCTCATGGTGCACAGCTTCAGGAAG
CAACAGGTGCGGCTGCATATAAATTCTGCAAGCGGCTCATTGAGGCAACG
GCGCCCTACGCAGCCGCGTACAAGCCAAACATAGCTTTTTTCGAGGCCCT
CGGAACTGAGGGGTGGCAAGCTTTGCTGGAGGTTGTGCAATCAGTCCCGT
CTGACATACCTGTCATTTTGGATGCGAAACGTGGGGATATTAGTACTACG
GCAGATGCGTACGCAACCGCGTGTTTCAAAAGCGTCGGGGCTACCGGCGT
AACCCTGCATGGGTACATGGGCGTGGATTCCGTGGCTCCGTTTATGAGAG
ACCCTCACGCTGGCGCTTTCATATTGTGCAAAACCTCGAACCCGTCCTCG
GCAGACTTCCAAACAATtccttgctctctctctACCATTGGTAGTGGTTG
CCAGTCACGAGTGCTGCCATGGCTACTATACGAGGAGGTGGCACGCCGGG
CAGGGGAATGGGGCACTCAGTACCAAGACCGGATAGGCCTTGTTGTCGGC
GCGACTGATCCTGATGCTTTGAAACGTGTTCGTGCCATAGTACCAGATAT
GTGGATTTTGGCTCCGGGCATCGGCGCTCAAGGAGGGGATTTGATAGGGG
CGTGTGCGGCGGGTCTGTCCAAGGGAGCAAGCAAATTGCTCTTACCCATC
TCGCGAGGCATCTCACAGGCACGCGACCCGGCCGAGGCGGCCGAAGCTTT
TCGAGTGGCCATCAACGTCGCCCGGAAGCAAGCGCGATCGCAAGTGGACA
TGAGCAATGTGGAATCGCTTGTGGAAGCGCCTCGAGGGGGTGCTTTAAAA
TCTTTTCAATCGGACTTTATCCGCTTCGCCCTCGACAGTGAGGTGCTGCT
CTTAGGCTCATTCACTCTCAAGTCTGGCCGCGTTTCGCCCTATTTCTTCA
ACGCCGGCAAGTTCACATCAGGGCTTGCGCTGAAAAAACTCAGTCACTTC
TACGCTCGGACGCTTCTGGAAAGCGGCTTGGTGTTCGATGTCCTTTTCGG
GCCGGCCTACAAGGGGATCACCTTAGCGTCGGCGGTAGCGGTCGCCCTAG
GAGAGCTGACTGGGCGCGATGTGCCCTTTGCTTACGACCgaaaagaggcg
aaggaccacggggaggggggcagatTAGTGGGTGCCGCCCTGTCCGGGAA
GCGGGTGGTGATCGTCGACGACGTGATTACGGCGGGCACGGCCATCCGCG
AGAGCATGCAGCTCTTGACGTCCGTCCAGGCAGAGGTGGTTGGCGTCGCG
CTGGCACTAGACCGGCAGGAGCGAGGAACCGATTCCCCGCTTTCGGCGGT
GCAGTCCGTTGAGCAGCAGTACGGTGTCCAAGTCTTGAGCGTGGTTGGTT
TGCGGGAATTGTTGGAGTTTTTCATGGAGAAAGCCGGAAatggaaaggcg
ggggatggggaaaaggaggctcTCGAAGCCATTCGTGAGTATCGGGCTCA
GTACGGGGTGGCTCCCTTGCAGGCGTGAATGGCTATGTCTTTTTTTGAAT
GCTTAGAGGCAAGGGTGAAGTCGGTGGACTCGTTGCTTTGCGTCGGACTC
GACCCTCATGGTGCACAGCTTCAGGAAGCAACAGGTGCGGCTGCATATAA
ATTCTGCAAGCGGCTCATTGAGGCAACGGCGCCCTACGCAGCCGCGTACA
AGCCAAACATAGCTTTTTTCGAGGCCCTCGGAACTGAGGGGTGGCAAGCT
TTGCTGGAGGTTGTGCAATCAGTCCCGTCTGACATACCTGTCATTTTGGA
TGCGAAACGTGGGGATATTAGTACTACGGCAGATGCGTACGCAACCGCGT
GTTTCAAAAGCGTCGGGGCTACCGGCGTAACCCTGCATGGGTACATGGGC
GTGGATTCCGTGGCTCCGTTTATGAGAGACCCTCACGCTGGCGCTTTCAT
ATTGTGCAAAACCTCGAACCCGTCCTCGGCAGACTTCCAAACAATtcctt
gctctctctctACCATTGGTAGTGGTTGCCAGTCACGAGTGCTGCCATGG
CTACTATACGAGGAGGTGGCACGCCGGGCAGGGGAATGGGGCACTCAGTA
CCAAGACCGGATAGGCCTTGTTGTCGGCGCGACTGATCCTGATGCTTTGA
AACGTGTTCGTGCCATAGTACCAGATATGTGGATTTTGGCTCCGGGCATC
GGCGCTCAAGGAGGGGATTTGATAGGGGCGTGTGCGGCGGGTCTGTCCAA
GGGAGCAAGCAAATTGCTCTTACCCATCTCGCGAGGCATCTCACAGGCAC
GCGACCCGGCCGAGGCGGCCGAAGCTTTTCGAGTGGCCATCAACGTCGCC
CGGAAGCAAGCGCGATCGCAAGTGGACATGAGCAATGTGGAATCGCTTGT
GGAAGCGCCTCGAGGGGGTGCTTTAAAATCTTTTCAATCGGACTTTATCC
GCTTCGCCCTCGACAGTGAGGTGCTGCTCTTAGGCTCATTCACTCTCAAG
TCTGGCCGCGTTTCGCCCTATTTCTTCAACGCCGGCAAGTTCACATCAGG
GCTTGCGCTGAAAAAACTCAGTCACTTCTACGCTCGGACGCTTCTGGAAA
GCGGCTTGGTGTTCGATGTCCTTTTCGGGCCGGCCTACAAGGGGATCACC
TTAGCGTCGGCGGTAGCGGTCGCCCTAGGAGAGCTGACTGGGCGCGATGT
GCCCTTTGCTTACGACCgaaaagaggcgaaggaccacggggaggggggca
gatTAGTGGGTGCCGCCCTGTCCGGGAAGCGGGTGGTGATCGTCGACGAC
GTGATTACGGCGGGCACGGCCATCCGCGAGAGCATGCAGCTCTTGACGTC
CGTCCAGGCAGAGGTGGTTGGCGTCGCGCTGGCACTAGACCGGCAGGAGC
GAGGAACCGATTCCCCGCTTTCGGCGGTGCAGTCCGTTGAGCAGCAGTAC
GGTGTCCAAGTCTTGAGCGTGGTTGGTTTGCGGGAATTGTTGGAGTTTTT
CATGGAGAAAGCCGGAAatggaaaggcgggggatggggaaaaggaggctc
TCGAAGCCATTCGTGAGTATCGGGCTCAGTACGGGGTGGCTCCCTTGCAG
GCGTGA

Synonyms

Publications