rna3581, rna3581 (mRNA) Nannochloropsis gaditana

Overview
Namerna3581
Unique Namerna3581
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length690
Alignment locationCM002461.1:747053..747561 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100046g28.5160.mrna
Orig protein idgnl|cribi|Naga_100046g28.5160
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:747053..747561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g28gene3449Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3581rna3581-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27121.1cds3572Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3581 ID=rna3581|Name=rna3581|organism=Nannochloropsis gaditana|type=mRNA|length=690bp
ATGAGTGAAAGCAAAAATGAGGCCGTCTCTGCCGCGGAGGCCGAGGCCCC
TGCTGCCCCTCCAGAGCCTGAGGAACCTGCGGAAGACCCGAACGAGGTTG
TGCGCTTTCTGACCCATTTATCGCCTACCTATGCTGAGGCCGCTAAGGCA
TTGGTGGCTGCGGGCGTGGAGACCGTGGCGGACTTGGCGGGGCTGGAATA
CCGGGACTTGGGAAGCTACGGCTTACCTCAAGATATCCGAGACAAGCTTG
GGCGCGTTCTGGACAAGCTGCGCGTGAACGGGACTGTCTTTATCTCAGGG
CTAAACCCCGCCACCACGGAGGCCGAGATCGCCGAGTACTTTGGCCAGAT
CGGCATCGTCAAGAAGATGAAACAGAAACGCGGATACCCCGATCAGTGGC
CCTACAAGATCAAAATGTACCGGGACGACTCGGGTAAGAGCAAAGGGGAG
TGCGTGCTCACGTACGAAGAACCGAATTCTGCGCATGCCTCCATATCCTT
CTTCCACGGGACGGAGCTGGCCGGTAGGAAATTGAAAGTGAGTATGGTCT
CGTACGGGGAGGATGAGGAGGGAGGGAATCAAGGGGGAGCAGAGGAGACA
GGCGGGATCGGCCGTATTGAGACTGCAATGAGACATCGGCAGGAGGAAGG
GGTGGCTGGCTCGCAGCTCCTTATTCGCATCACGCAGTAA
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protein sequence of rna3581

>rna3581-protein ID=rna3581-protein|Name=rna3581|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MTIADDANIPWIVVPLVVLRPIGAIHLLLPLRGVGRRRNATRVQRHELDR
LISASTALASGSDTTGTPRLKVWKHRS
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mRNA from alignment at CM002461.1:747053..747561-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3581 ID=rna3581|Name=rna3581|organism=Nannochloropsis gaditana|type=mRNA|length=509bp|location=Sequence derived from alignment at CM002461.1:747053..747561- (Nannochloropsis gaditana)
ATGACAATAGGTAAGATCTGATGTAGAAGCCAGGCTGTTGCTTCTTCGGT
GACGTGAGGAGACTCGGACGTCACAGGTGGCCATCTTCCCCCACCCACGC
CACGCACCTCAACCCCAAGTCGGGCTCAGGAGAACCTCTGAAATCTACAC
AAAGTAAACGCCACAACAGGGTCACACCGTTCTGGTCTGGTGTCTTTGTG
GTTTATTTGATGCTCCGTGCCTGGGAGTGACCTCCTGCTCGCGCTTGAAG
CTCGCTTTTCCCATGGGCTCTTCCACATAATTGAGCGGACGATGCAAATA
TTCCATGGATCGTGGTCCCTCTTGTTGTCTTGCGTCCAATCGGTGCCATA
CACTTATTACTTCCGTTGAGGGGTGTGGGTCGGCGAAGAAATGCAACCAG
GGTACAAAGACATGAATTGGATCGGCTCATTTCAGCCAGTACAGCTCTGG
CTTCTGGCAGTGATACCACCGGAACCCCGCGACTGAAAGTGTGGAAACAC
AGATCATGA
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Coding sequence (CDS) from alignment at CM002461.1:747053..747561-

>rna3581 ID=rna3581|Name=rna3581|organism=Nannochloropsis gaditana|type=CDS|length=468bp|location=Sequence derived from alignment at CM002461.1:747053..747561- (Nannochloropsis gaditana)
CGGACGATGCAAATATTCCATGGATCGTGGTCCCTCTTGTTGTCTTGCGT
CCAATCGGTGCCATACACTTATTACTTCCGTTGAGGGGTGTGGGTCGGCG
AAGAAATGCAACCAGGGTACAAAGACATGAATTGGATCGGCTCATTTCAG
CCAGTACAGCTCTGGCTTCTGGCAGTGATACCACCGGAACCCCGCGACTG
AAAGTGTGGAAACACAGATCATGAATGACAATAGCGGACGATGCAAATAT
TCCATGGATCGTGGTCCCTCTTGTTGTCTTGCGTCCAATCGGTGCCATAC
ACTTATTACTTCCGTTGAGGGGTGTGGGTCGGCGAAGAAATGCAACCAGG
GTACAAAGACATGAATTGGATCGGCTCATTTCAGCCAGTACAGCTCTGGC
TTCTGGCAGTGATACCACCGGAACCCCGCGACTGAAAGTGTGGAAACACA
GATCATGAATGACAATAG
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Synonyms
Publications