rna3577, rna3577 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3577
Unique Name	rna3577
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1267
Alignment location	CM002461.1:739874..742565 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100046g25.5157.mrna
Orig protein id	gnl\|cribi\|Naga_100046g25.5157
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:739874..742565 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g25	gene3446	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27118.1	cds3568	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3577	rna3577-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:739874..742565-
coding sequence from alignment at CM002461.1:739874..742565-

mRNA sequence

>rna3577 ID=rna3577|Name=rna3577|organism=Nannochloropsis gaditana|type=mRNA|length=1267bp
GCCCGCGGGAAATGCATACGTGAAATGCACAGGCAAGGCTTGGAAGCTTT
TAGAGTAGCCGGGTGGTCTGACAGTAAAAAGGGTGGCCGGCTCGTGTGTC
ACAAGGAAAACAACCTCCTCCCTCCTTAACCTCCCCCCTTGCTTGGTTTC
TGTGCATTGACGCCTCACTTTCACCCTCGAACGTCTGAATTCCACGTATA
CAGGCTCTTGCACGTTAAATCTCACGTTAAACCTGGGATATAGGAAGCAA
GCAGCATGGTTTTGTTCGTCGTAGGCCTAGGTTTAGGCGATGAAGATGAT
ATAACTGTGCGTGGGCTGAAGGCAGTGCAACGAAGCGAAGTCATATTTTT
AGAGGCTTACACATCTGTCTTGGGAACCCCTAAAGAGCGTCTTGAAACTG
TCTTTGGAAAGTCTATTGTCATTGCGGATCGAAATATGGTTGAAAGTGAA
GCAGAGCGGATCTACATGCCGGCTAAAGAGACCGATGTATGCTTTTTGGT
GGTAGGTGATCCTCTTTGCGCTACCACCCACACGGACATAATTATACGAG
CCAAAGCCGAGGGAATAAGAGTAGAAGTTGTGCATAATACGTCCGTCATG
GGTGCTGTCGCGTCGTGTGGTTTGCAGCTTTACAGTTTCGGGTACACGGT
ATCCATTCCGTTGTTCGAGGGAGAGTGGCGGCCCGATTCCTTCTATCCAA
AAATTGCTTACAACAAAGCAGGCGGCATGCACACGCTCTGTCTCTTAGAC
ATTAAGATGAAAGAGCCTGACTATGAAGAGATGATGCGTGGCCGTGTGCG
CTACCTCCCCCCGCGCTTCATGACAGTCAACGTGGCTATCGGACAGTTGC
TGGCCGTTGAAGCTGTACGAGGCGAGGGGGTGCTATCGCGGGAAACGTCT
GCAGTGGGCTTGGCGCGCCTGGGACAGTCGACGCAAATGATCGTGTCGGG
GACCTTGGGGGAGTTGCTTGAGGTTGATTTCGGTAAGCCTTTGCACAGCT
TGGTGATTTGCGGGGAGCAACATCCCTGCGAGGTGGAGCTCTTGGATATG
TTCCACGTCCGAAAAGGTGGATGGAGCCGGTACGTGAGACCGGACGACAA
CACCAGCAGCAGCAGCGACGATGGTGATGAAGACGATGGTGTTGATGGAA
ACGGACCACCGGCTCACGCAGATGTGACGGGAGAGGGCTTAAAGCAATAA
ATTATTCATATTATTCAATCGACGCACCTGCTGCCCCCAAGAAAAGCACA
TATCAAACTGAGAAGCC

protein sequence of rna3577

>rna3577-protein ID=rna3577-protein|Name=rna3577|organism=Nannochloropsis gaditana|type=polypeptide|length=613bp
MRFLIIPLTSCTPYSPSVKVISRASVSDLSGEPAAPGQITPPLPRGFFHS
SLHFLFVHAMARPLLVDEESHVNRSTNNRSVSHECQSKCSNGTTGSPRSS
QYLARRSQVLWTVVFASVALFIKRLQQDSPALINPPYCAWRFVGNHDAWN
VAFPDMRSLYHVMQIQMSKGDEFKLVAESFPYARYCSYQTYDLRTLMSHQ
SLRDVDIVPDANGPNCYANLTAAQEGLRQGGYTLYMTARGDQNYTNELRA
LPDSIESGQFDLFFRIYVEEALQGPPQAPWGHLPPYGKDLAFEWGWAPPP
RLYAKRAHLKDGEWREVPFCQYRRRKGFKLLAYLSEIWPAPSPPFAGHPA
VAPNKANNVFLPKYTDRQGKFASKDANYVASVAEPRHVRNGSEAMLWARV
TGTLPRVPGSLYTPPYVANATDYDVRYVSLSAVHRTIPFRNHATVADTQI
TEHYQKRLPPGVEWDRKFTIWVVPPQVESAYPRQVMDENPVIMKWGASLF
GGGIVEYTGLLYRQVMARSQVVGLEQGALSASGVVNIVPEACQSGQVGPH
GEGADAAMKAGDPLEMEQFCCSTEAPMECFLPEYVRYRMGPYYPQVEYFT
GGPEDAALTRLEH

mRNA from alignment at CM002461.1:739874..742565-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3577 ID=rna3577|Name=rna3577|organism=Nannochloropsis gaditana|type=mRNA|length=2692bp|location=Sequence derived from alignment at CM002461.1:739874..742565- (Nannochloropsis gaditana)
GCATGCGATTTCTTATTATACCCCTCACGTCATGCACACCCTATTCTCCA
TCCGTGAAGGTGATTTCGAGGGCCTCTGTGAGTGATTTAAGTGGGGAGCC
AGCGGCACCGGGTCAAATAACCCCCCCCCTCCCACGGGGGTTCTTCCACT
CCAGTCTTCACTTCCTATTTGTCCACGCCATGGCGCGGCCTTTGCTCGTG
GATGAAGAATCACATGTAAACAGGAGCACCAACAATAGAAGTGTCAGTCA
TGAGTGCCAGAGCAAATGTAGCAACGGCACAACTGGCTCTCCACGGAGCT
CGCAGTACCTCGCCCGCCGCTCCCAGGTGCTCTGGACGGTGGTCTTCGCC
TCTGTCGCATTGTTCATTAAGCGCCTCCAACAAGACAGCCCAGCGTTAAT
CAACCCTCCTTACTGTGCATGGAGGTTTGTGGGAAATCACGACGCGTGGA
ATGTAGCTTTCCCGGACATGCGATCCTTGTATCATGTCATGCAGATCCAA
ATGAGCAAAGGGGATGAGTTCAAATTGGTCGCGGAGTCTTTCCCGTACGC
TCGATACTGCTCCTACCAAACGTACGATTTGCGGACGCTCATGTCGCACC
AGAGCCTGCGGGACGTGGACATCGTCCCTGATGCAAACGGACCCAACTGC
TACGCGAACCTGACCGCCGCCCAGGAGGGCCTGAGGCAGGGGGGCTACAC
GCTCTACATGACGGCCAGGGGCGATCAGAACTACACCAACGAGCTGCGTG
CGCTTCCTGATTCCATAGAGTCCGGTCAATTCGACCTTTTCTTCCGCATT
TACGTGGAGGAGGCTCTGCAAGGCCCGCCCCAGGCGCCATGGGGGCACCT
TCCTCCCTACGGGAAGGACCTGGCCTTCGAGTGGGGATGGGCGCCGCCAC
CCCGACTCTATGCTAAGCGCGCGCACCTGAAGGACGGAGAATGGCGCGAA
GTTCCCTTCTGCCAGTACCGTCGGCGGAAAGGGTTCAAGCTGCTGGCTTA
TCTTTCCGAGATCTGGCCGGCGCCCTCCCCCCCCTTCGCAGGCCACCCTG
CCGTGGCTCCCAATAAGGCGAACAATGTGTTTTTGCCCAAGTACACGGAC
CGTCAGGGCAAGTTCGCGAGTAAAGACGCGAACTACGTGGCGTCCGTGGC
GGAGCCCAGGCACGTCCGCAACGGGAGCGAGGCCATGCTCTGGGCGCGCG
TGACGGGCACTTTGCCGCGAGTCCCGGGCTCCCTCTACACCCCCCCCTAC
GTCGCCAACGCCACTGACTACGACGTCCGGTACGTGTCATTGTCCGCCGT
GCATCGGACCATTCCCTTCCGGAACCACGCGACGGTCGCCGACACGCAGA
TCACCGAGCACTACCAAAAACGCCTTCCCCCCGGAGTAGAGTGGGACCGT
AAATTTACGATATGGGTGGTGCCTCCGCAGGTGGAAAGCGCTTACCCCCG
GCAGGTGATGGACGAGAACCCCGTGATCATGAAGTGGGGCGCCTCCCTCT
TCGGGGGCGGGATTGTGGAGTACACGGGCCTGCTGTACCGGCAGGTGATG
GCGCGGAGCCAGGTAGTGGGCTTGGAACAAGGGGCATTGAGCGCGTCGGG
AGTGGTGAACATCGTGCCCGAGGCGTGCCAATCGGGTCAAGTGGGGCCAC
ACGGGGAGGGGGCGGACGCCGCCATGAAAGCGGGGGACCCACTGGAGATG
GAGCAGTTCTGCTGCAGCACAGAGGCGCCCATGGAGTGTTTTTTACCGGA
ATATGTGCGGTATCGCATGGGCCCGTACTACCCTCAAGTCGAGTACTTCA
CCGGGGGCCCGGAGGATGCTGCCTTGACGAGGCTGGAGCACTAGGGACAG
CCGAAAGGAAGGGGGAGGAGGACGAGGGAGGGAGCTCTCCGGGATCATGT
GAGATGATTTCTGATTGAGTTTTCGAGCCTTGGACAGGAATTAGAGGGCG
GGGGGACGAGAATGAAATCGAATCTCGGCAAGGTTCGCGGCCCGCTTCTC
TTGGTAGCCAGTTCCCAAACATGTAATTTAACGGCAGGTGCAGCGACAGC
TAAAAGAGCAACGCGATCCTAGACGCACATGTATGTACCTTATTTCCATT
TTCTGGAGGCGTCAGGTTGAATTTCCCGGAGGCATAAGGGTGGCCTAGGC
ATGATTGATATGACGTTTGTATGGACATGACAGGCGTGCGCCCAGCGTGG
GGGGTATGATTTGTACAGGTGGCAAAGAAGTGGGGGAAGGGGCTGGGGAG
GAGACATGCCGGTGTGTCCGGGCTCCGCCTGGCTGGTTATGAGCCAGCCT
TAAAATGGGATGTACCACATCCTCGCTTGGGCATCAATATGCTTATTGCG
CCTCATGCGGGCGCTCGGAGAGATCAGCTCATGGCATCAAGTGCTGGGAT
AGTAGAAAAGGAGAAACAGACGATGACGTGGGCGCGTCTGCGCTGACACG
CGTCGCTCTCGCGTGAGACTGGATGATTAGTACAATGTGGCTGCACAATG
AAATACAGGGACAGGGAGTCCCTTGCATGGGCGACAGCCGGATACGGGCG
CAGAGTAGGGCGAAAGACGATGTATGTAGTCCGAGGTCAGAGGCATTTCT
CGCTTGCGTCACTTTATGGCCTCTGGCGGGAGACTTGTCAAGTAATGAGG
ATAGAGAAAAAGAATCGATACTCATCCCATTAAGGACTTGAG

Coding sequence (CDS) from alignment at CM002461.1:739874..742565-

>rna3577 ID=rna3577|Name=rna3577|organism=Nannochloropsis gaditana|type=CDS|length=1842bp|location=Sequence derived from alignment at CM002461.1:739874..742565- (Nannochloropsis gaditana)
ATGCGATTTCTTATTATACCCCTCACGTCATGCACACCCTATTCTCCATC
CGTGAAGGTGATTTCGAGGGCCTCTGTGAGTGATTTAAGTGGGGAGCCAG
CGGCACCGGGTCAAATAACCCCCCCCCTCCCACGGGGGTTCTTCCACTCC
AGTCTTCACTTCCTATTTGTCCACGCCATGGCGCGGCCTTTGCTCGTGGA
TGAAGAATCACATGTAAACAGGAGCACCAACAATAGAAGTGTCAGTCATG
AGTGCCAGAGCAAATGTAGCAACGGCACAACTGGCTCTCCACGGAGCTCG
CAGTACCTCGCCCGCCGCTCCCAGGTGCTCTGGACGGTGGTCTTCGCCTC
TGTCGCATTGTTCATTAAGCGCCTCCAACAAGACAGCCCAGCGTTAATCA
ACCCTCCTTACTGTGCATGGAGGTTTGTGGGAAATCACGACGCGTGGAAT
GTAGCTTTCCCGGACATGCGATCCTTGTATCATGTCATGCAGATCCAAAT
GAGCAAAGGGGATGAGTTCAAATTGGTCGCGGAGTCTTTCCCGTACGCTC
GATACTGCTCCTACCAAACGTACGATTTGCGGACGCTCATGTCGCACCAG
AGCCTGCGGGACGTGGACATCGTCCCTGATGCAAACGGACCCAACTGCTA
CGCGAACCTGACCGCCGCCCAGGAGGGCCTGAGGCAGGGGGGCTACACGC
TCTACATGACGGCCAGGGGCGATCAGAACTACACCAACGAGCTGCGTGCG
CTTCCTGATTCCATAGAGTCCGGTCAATTCGACCTTTTCTTCCGCATTTA
CGTGGAGGAGGCTCTGCAAGGCCCGCCCCAGGCGCCATGGGGGCACCTTC
CTCCCTACGGGAAGGACCTGGCCTTCGAGTGGGGATGGGCGCCGCCACCC
CGACTCTATGCTAAGCGCGCGCACCTGAAGGACGGAGAATGGCGCGAAGT
TCCCTTCTGCCAGTACCGTCGGCGGAAAGGGTTCAAGCTGCTGGCTTATC
TTTCCGAGATCTGGCCGGCGCCCTCCCCCCCCTTCGCAGGCCACCCTGCC
GTGGCTCCCAATAAGGCGAACAATGTGTTTTTGCCCAAGTACACGGACCG
TCAGGGCAAGTTCGCGAGTAAAGACGCGAACTACGTGGCGTCCGTGGCGG
AGCCCAGGCACGTCCGCAACGGGAGCGAGGCCATGCTCTGGGCGCGCGTG
ACGGGCACTTTGCCGCGAGTCCCGGGCTCCCTCTACACCCCCCCCTACGT
CGCCAACGCCACTGACTACGACGTCCGGTACGTGTCATTGTCCGCCGTGC
ATCGGACCATTCCCTTCCGGAACCACGCGACGGTCGCCGACACGCAGATC
ACCGAGCACTACCAAAAACGCCTTCCCCCCGGAGTAGAGTGGGACCGTAA
ATTTACGATATGGGTGGTGCCTCCGCAGGTGGAAAGCGCTTACCCCCGGC
AGGTGATGGACGAGAACCCCGTGATCATGAAGTGGGGCGCCTCCCTCTTC
GGGGGCGGGATTGTGGAGTACACGGGCCTGCTGTACCGGCAGGTGATGGC
GCGGAGCCAGGTAGTGGGCTTGGAACAAGGGGCATTGAGCGCGTCGGGAG
TGGTGAACATCGTGCCCGAGGCGTGCCAATCGGGTCAAGTGGGGCCACAC
GGGGAGGGGGCGGACGCCGCCATGAAAGCGGGGGACCCACTGGAGATGGA
GCAGTTCTGCTGCAGCACAGAGGCGCCCATGGAGTGTTTTTTACCGGAAT
ATGTGCGGTATCGCATGGGCCCGTACTACCCTCAAGTCGAGTACTTCACC
GGGGGCCCGGAGGATGCTGCCTTGACGAGGCTGGAGCACTAG

Synonyms

Publications