rna3576, rna3576 (mRNA) Nannochloropsis gaditana

Overview
Namerna3576
Unique Namerna3576
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1455
Alignment locationCM002461.1:738440..739867 +

Link to JBrowse

Properties
Property NameValue
Productdiphthine synthase
Orig transcript idgnl|cribi|Naga_100046g22.5146.mrna
Orig protein idgnl|cribi|Naga_100046g22.5146
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:738440..739867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100046g22gene3445Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3576rna3576-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27107.1cds3567Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3576 ID=rna3576|Name=rna3576|organism=Nannochloropsis gaditana|type=mRNA|length=1455bp
CCTAGGCCTACGACGAACAAAACCATGCTGCTTGCTTCCTATATCCCAGG
TTTAACGTGAGATTTAACGTGCAAGAGCCTGTATACGTGGAATTCAGACG
TTCGAGGGTGAAAGTGAGGCGTCAATGCACAGAAACCAAGCAAGGGGGGA
GGTTAAGGAGGGAGGAGGTTGTTTTCCTTGTGACACACGAGCCGGCCACC
CTTTTTACTGTCAGACCACCCGGCTACTCTAAAAGCTTCCAAGCCTTGCC
TGTGCATTTCACGTATGCATTTCCCGCGGGCATTAAAGTCGATAAGGACG
CGCTGCACGCAGTGTGTTCCGGCCTCACTTTTTTCTTACATCCTGACATC
CTCAGTTCCTCGAGCCGGAATGGGGCGGTGGGCGGGTACAACAACTTTTT
TATGGCACGCTGGTGCAAGGTGCTCCTTTATTATCCTTTTTCTTCGAACG
CCTGTTTTTCCCTTCATTTTGTGTCCGCACACACGGTCCTCAATGGCGAC
CGAACCAAGACCTCGAGGAGCATTGCCAATATGTCTCATGCCGGGCCAGG
CGGCGGCCAAGTGGGTGAAAACAAGCAAAGAAAAGGACGAAAAGCTGCAC
GCGGAAACTTTATTCGCCACCTTCGACAAGGGGGGCAGGCGACGTCCGGA
TGGGGAGGCCGACTACTCAGACTTCAACAAACCCTCAGGGACCTCGCCAC
CCCTCACGCAGAACGCCCTTTTGCGGCTACTAAAGACGGGGAAAAAGACG
GTTTTGGCGGATGGACTTGCCGTGGTGGACTCGCAGTGCTGGTGGAGGTG
GACCCCGACTGAGCAGAGGGACTTCCTTGAGAAGCAAATCCGAGACCGAG
GCCACTCCCCTCAAGACGCCTCCTTGACGCTCGCATCCCCCTCTCAGCCC
CTGGACCCTCCCTTTCTCTTCCATTTGCGATATCCCTTCCCTCTCCATCG
CCTCACCACCCGCCTTGCCTACCATCCCTCCGCTGGGCGTTTTGCTCTTG
CTGAGAAGCCCTGGCTCGAAGAAAACGAGCTCTACCGCTGGTCTATTCCA
TTCTTCATCCGCTTCTTCCTGAAAGCAGCACGGCCTCTGTACGCCCCTAT
TTTTTGCTTCAAGTGGCTTGGCCTGCGTGCCATGATACTTTGGCGCTCCT
TCTCACTCTTCGTCCTCCCCTCGGTGCCCTACGTCGCCCTTTTTACATTC
CGCGCCATCTACATGCTCGCCGCCTGCGCCCTGGTCACTGTCGCCTTGGA
TGAGTTGATGCATCCACTCCTAGAGTGGACATACAACATATTTTATAAAG
GCCATAGGCCGCTTCCTGACCTGTCTTACTACAATCTAGCGGAGGCGTGG
TCGAGGAAGGGGACTGAGGGGGCGGGAGGTTATACTTGGCGGGATCGGTT
GTGGACGTTTTGAATTAATATTGTACACAAAATGTAAATACTTTGGGAAT
TTAAT
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protein sequence of rna3576

>rna3576-protein ID=rna3576-protein|Name=rna3576|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MVLFVVGLGLGDEDDITVRGLKAVQRSEVIFLEAYTSVLGTPKERLETVF
GKSIVIADRNMVESEAERIYMPAKETDVCFLVVGDPLCATTHTDIIIRAK
AEGIRVEVVHNTSVMGAVASCGLQLYSFGYTVSIPLFEGEWRPDSFYPKI
AYNKAGGMHTLCLLDIKMKEPDYEEMMRGRVRYLPPRFMTVNVAIGQLLA
VEAVRGEGVLSRETSAVGLARLGQSTQMIVSGTLGELLEVDFGKPLHSLV
ICGEQHPCEVELLDMFHVRKGGWSRYVRPDDNTSSSSDDGDEDDGVDGNG
PPAHADVTGEGLKQ
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mRNA from alignment at CM002461.1:738440..739867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3576 ID=rna3576|Name=rna3576|organism=Nannochloropsis gaditana|type=mRNA|length=1428bp|location=Sequence derived from alignment at CM002461.1:738440..739867+ (Nannochloropsis gaditana)
GCCCGCGGGAAATGCATACGTGAAATGCACAGGCAAGGCTTGGAAGCTTT
TAGAGTAGCCGGGTGGTCTGACAGTAAAAAGGGTGGCCGGCTCGTGTGTC
ACAAGGAaaacaacctcctccctccttaacctccccccttgcttgGTTTC
TGTGCATTGACGCCTCACTTTCACCCTCGAACGTCTGAATTCCACGTATA
CAGGCTCTTGCACGTTAAATCTCACGTTAAACCTGGGATATAGGAAGCAA
GCAGCATGGTTTTGTTCGTCGTAGGCCTAGGTTTAGGCGATGAAGATGAT
ATAACTGTGCGTGGGCTGAAGGCAGTGCAACGAAGCGAAGTCATATTTTT
AGAGGCTTACACATCTGTCTTGGGAACCCCTAAAGAGCGTCTTGAAACTG
TCTTTGGAAAGTCTATTGTCATTGCGGATCGAAATATGGTTGAAAGTGAA
GCAGAGCGGATCTACATGCCGGCTAAAGAGACCGATGTATGCTTTTTGGT
GGTAGGTGATCCTCTTTGCGCTACCACCCACACGGACATAATTATACGAG
CCAAAGCCGAGGGAATAAGAGTAGAAGTTGTGCATAATACGTCCGTCATG
GGTGCTGTCGCGTCGTGTGGTTTGCAGCTTTACAGTTTCGGGTACACGGT
ATCCATTCCGTTGTTCGAGGGAGAGTGGCGGCCCGATTCCTTCTATCCAA
AAATTGCTTACAACAAAGCAGGCGGCATGCACACGCTCTGTCTCTTAGAC
ATTAAGATGAAAGAGCCTGACTATGAAGAGATGATGCGTGGCCGTGTGCg
ctacctccccccgcgcttCATGACAGTCAACGTGGCTATCGGACAGTTGC
TGGCCGTTGAAGCTGTACGAGGCGAGGGGGTGCTATCGCGGGAAACGTCT
GCAGTGGGCTTGGCGCGCCTGGGACAGTCGACGCAAATGATCGTGTCGGG
GACCTTGGGGGAGTTGCTTGAGGTTGATTTCGGTAAGCCTTTGCACAGCT
TGGTGATTTGCGGGGAGCAACATCCCTGCGAGGTGGAGCTCTTGGATATG
TTCCACGTCCGAAAAGGTACGCTATTCTGTGTAAAGTTATTCAGGGGGTT
GCTTTGATCGCTTGAGTCAATCGCCATGCCCGGTCCTATATCATAATGTT
TGACCTCGCAAcatgctcctttccctccccttggcCCCCCCCTTGGCGGA
AcacgcttcccccccaaTGTCACCCAGGTGGATGGAGCCGGTACGTGAGA
CCGGACGAcaacaccagcagcagcagcgacgatGGTGATGAAGACGATGG
TGTTGATGGAAACGGACCACCGGCTCACGCAGATGTGACGGGAGAGGGCT
TAAAGCAATAAATTATTCATATTATTCAATCGACGCACCTGCTGCCCCCA
AGAAAAGCACATATCAAACTGAGAAGCC
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Coding sequence (CDS) from alignment at CM002461.1:738440..739867+

>rna3576 ID=rna3576|Name=rna3576|organism=Nannochloropsis gaditana|type=CDS|length=1890bp|location=Sequence derived from alignment at CM002461.1:738440..739867+ (Nannochloropsis gaditana)
ATGGTTTTGTTCGTCGTAGGCCTAGGTTTAGGCGATGAAGATGATATAAC
TGTGCGTGGGCTGAAGGCAGTGCAACGAAGCGAAGTCATATTTTTAGAGG
CTTACACATCTGTCTTGGGAACCCCTAAAGAGCGTCTTGAAACTGTCTTT
GGAAAGTCTATTGTCATTGCGGATCGAAATATGGTTGAAAGTGAAGCAGA
GCGGATCTACATGCCGGCTAAAGAGACCGATGTATGCTTTTTGGTGGTAG
GTGATCCTCTTTGCGCTACCACCCACACGGACATAATTATACGAGCCAAA
GCCGAGGGAATAAGAGTAGAAGTTGTGCATAATACGTCCGTCATGGGTGC
TGTCGCGTCGTGTGGTTTGCAGCTTTACAGTTTCGGGTACACGGTATCCA
TTCCGTTGTTCGAGGGAGAGTGGCGGCCCGATTCCTTCTATCCAAAAATT
GCTTACAACAAAGCAGGCGGCATGCACACGCTCTGTCTCTTAGACATTAA
GATGAAAGAGCCTGACTATGAAGAGATGATGCGTGGCCGTGTGCgctacc
tccccccgcgcttCATGACAGTCAACGTGGCTATCGGACAGTTGCTGGCC
GTTGAAGCTGTACGAGGCGAGGGGGTGCTATCGCGGGAAACGTCTGCAGT
GGGCTTGGCGCGCCTGGGACAGTCGACGCAAATGATCGTGTCGGGGACCT
TGGGGGAGTTGCTTGAGGTTGATTTCGGTAAGCCTTTGCACAGCTTGGTG
ATTTGCGGGGAGCAACATCCCTGCGAGGTGGAGCTCTTGGATATGTTCCA
CGTCCGAAAAGGTGGATGGAGCCGGTACGTGAGACCGGACGAcaacacca
gcagcagcagcgacgatGGTGATGAAGACGATGGTGTTGATGGAAACGGA
CCACCGGCTCACGCAGATGTGACGGGAGAGGGCTTAAAGCAATAAATGGT
TTTGTTCGTCGTAGGCCTAGGTTTAGGCGATGAAGATGATATAACTGTGC
GTGGGCTGAAGGCAGTGCAACGAAGCGAAGTCATATTTTTAGAGGCTTAC
ACATCTGTCTTGGGAACCCCTAAAGAGCGTCTTGAAACTGTCTTTGGAAA
GTCTATTGTCATTGCGGATCGAAATATGGTTGAAAGTGAAGCAGAGCGGA
TCTACATGCCGGCTAAAGAGACCGATGTATGCTTTTTGGTGGTAGGTGAT
CCTCTTTGCGCTACCACCCACACGGACATAATTATACGAGCCAAAGCCGA
GGGAATAAGAGTAGAAGTTGTGCATAATACGTCCGTCATGGGTGCTGTCG
CGTCGTGTGGTTTGCAGCTTTACAGTTTCGGGTACACGGTATCCATTCCG
TTGTTCGAGGGAGAGTGGCGGCCCGATTCCTTCTATCCAAAAATTGCTTA
CAACAAAGCAGGCGGCATGCACACGCTCTGTCTCTTAGACATTAAGATGA
AAGAGCCTGACTATGAAGAGATGATGCGTGGCCGTGTGCgctacctcccc
ccgcgcttCATGACAGTCAACGTGGCTATCGGACAGTTGCTGGCCGTTGA
AGCTGTACGAGGCGAGGGGGTGCTATCGCGGGAAACGTCTGCAGTGGGCT
TGGCGCGCCTGGGACAGTCGACGCAAATGATCGTGTCGGGGACCTTGGGG
GAGTTGCTTGAGGTTGATTTCGGTAAGCCTTTGCACAGCTTGGTGATTTG
CGGGGAGCAACATCCCTGCGAGGTGGAGCTCTTGGATATGTTCCACGTCC
GAAAAGGTGGATGGAGCCGGTACGTGAGACCGGACGAcaacaccagcagc
agcagcgacgatGGTGATGAAGACGATGGTGTTGATGGAAACGGACCACC
GGCTCACGCAGATGTGACGGGAGAGGGCTTAAAGCAATAA
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Synonyms
Publications