rna3575, rna3575 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3575
Unique Name	rna3575
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1491
Alignment location	CM002461.1:737058..738720 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100046g21.5159.mrna
Orig protein id	gnl\|cribi\|Naga_100046g21.5159
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:737058..738720 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g21	gene3444	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3575	rna3575-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27120.1	cds3566	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:737058..738720-
coding sequence from alignment at CM002461.1:737058..738720-

mRNA sequence

>rna3575 ID=rna3575|Name=rna3575|organism=Nannochloropsis gaditana|type=mRNA|length=1491bp
ATGACAGCCGACGACTCCTCCTTCCTGACACCGCCACATGCGGTCACGAT
AGGTGTCGTCGCAGCGTGCCTGCTTGCAATTATATTCATTAAAGCTAAGT
CGTCATCCACTTCGACGACGCTTGACTCGAAGGCACCCGTGCCTGTCCTT
GTCGAAGTCCCGGATGCAGTCCTGAATCGCCGTTTTAAGTACGATCTTCC
CAATAGGGCTTTGGTGACGGGGGGAAACGGTTTTGTCGGACGCCGTATTG
TTGCAATGCTCTTGGAACAGGGGTGTGATGTGACCGTATTCGACATCACC
AAGGGGTTCGAAGACGAACCTCGCGTCAAAATGGTAGTCGGGAACCTGGT
AGAAACCGCAGATGTCGCGAAGGCCGTAGAAGGGATCGAAGTGGTCTATC
ACGTAGCAGCACCGCATGCCTCCCACCCCCCCGCGGTGCAGTTTGCGGTC
AATGTCACCGGGACCCGGGCCCTGCTCCAGGCATCCGCAGCCGCGGGCGT
GAAAAAGTTTGTCTTCACGTCCTCGGCTAGCGTCGTGTACGAGGGGGGAA
ATCAGGCGGGTGTGGACGAGAGCACGCCCATCCCTACGGCCAGTCTGGAC
TCCTATACAAAGACGAAGGCGGAAGCCGAGGCCCTGGTCCTGGCGGCGAA
CGGGCAGCACGGCATGCACACGGCGGCCATTCGGCCCCACGGGATATTCG
GACCGGGTGACAGGCAGTTCTTCCCGGTGTTGGTGGAAAGCGCTCGAAAG
GGCAAGACCAAGTACGCCCTGGGCGAGGGCAGGAATGTGGCTGACTTTAC
ATTCGTAGGGAATGTGGCTCACGCGCATTTGCTGGCGGCGGAGAAGCTCG
GCAAGGTGCCGGGAGTGGACGGACAGGCCTTTTTTGTCACGAACGACGCG
CCCGTGCCCTTCTGGGATTTCTTGGCACAAGTGCTGACAGGATTTGGATA
CCCGGCGCCCAGTGTCCGCCTGCCCGCGGGGCTCATGACCGTCGTGGGAG
GCTGGATGGATGGCATGGCGACCCTCCTGCGCATGGTGGGCGTGAGATTT
CAGCCTACTTTCACAAGATCGAGGGTGCAGTACTTGACGACGCATCACTA
CTACAGCATCGAGAAGGCGAAGCGCCTGCTGGGCTATGCGCCTGCCTGGT
CGCAGGAGGAGGCGCTGGCCCTATGCTTCCAATGCATGATGCCCGCCCTC
GCAAACCCCCGGGCGCCCAAGCCTCGCCGAGTGACGGTGAAGAAAGGGCA
GAGCGTGCCCGTCTATAGGATGCAGCAGGTGTCTCGGCACAACACCCGCG
GGGACGCCTGGATCGTGGTGGACGGCAAGGTCTATGATGTGACCGAGTAC
GTGGACGTACATCCTGGGGACGACGCTATCCTGCGCTTCGTGGGGGGGGA
CTCGAGCAAAGGCTTCCACGGACCGCAGCACCCCGTCTCTGTTTGGGACG
TGATCGCAGAGTACGAGATAGGGGCCGTGGCGGCCGAATGA

protein sequence of rna3575

>rna3575-protein ID=rna3575-protein|Name=rna3575|organism=Nannochloropsis gaditana|type=polypeptide|length=382bp
MHFPRALKSIRTRCTQCVPASLFSYILTSSVPRAGMGRWAGTTTFLWHAG
ARCSFIILFLRTPVFPFILCPHTRSSMATEPRPRGALPICLMPGQAAAKW
VKTSKEKDEKLHAETLFATFDKGGRRRPDGEADYSDFNKPSGTSPPLTQN
ALLRLLKTGKKTVLADGLAVVDSQCWWRWTPTEQRDFLEKQIRDRGHSPQ
DASLTLASPSQPLDPPFLFHLRYPFPLHRLTTRLAYHPSAGRFALAEKPW
LEENELYRWSIPFFIRFFLKAARPLYAPIFCFKWLGLRAMILWRSFSLFV
LPSVPYVALFTFRAIYMLAACALVTVALDELMHPLLEWTYNIFYKGHRPL
PDLSYYNLAEAWSRKGTEGAGGYTWRDRLWTF

mRNA from alignment at CM002461.1:737058..738720-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3575 ID=rna3575|Name=rna3575|organism=Nannochloropsis gaditana|type=mRNA|length=1663bp|location=Sequence derived from alignment at CM002461.1:737058..738720- (Nannochloropsis gaditana)
CCTAGGCCTACGACGAACAAAACCATGCTGCTTGCTTCCTATATCCCAGG
TTTAACGTGAGATTTAACGTGCAAGAGCCTGTATACGTGGAATTCAGACG
TTCGAGGGTGAAAGTGAGGCGTCAATGCACAGAAACCAAGCAAGGGGGGA
GGTTAAGGAGGGAGGAGGTTGTTTTCCTTGTGACACACGAGCCGGCCACC
CTTTTTACTGTCAGACCACCCGGCTACTCTAAAAGCTTCCAAGCCTTGCC
TGTGCATTTCACGTATGCATTTCCCGCGGGCATTAAAGTCGATAAGGACG
CGCTGCACGCAGTGTGTTCCGGCCTCACTTTTTTCTTACATCCTGACATC
CTCAGTTCCTCGAGCCGGAATGGGGCGGTGGGCGGGTACAACAACTTTTT
TATGGCACGCTGGTGCAAGGTGCTCCTTTATTATCCTTTTTCTTCGAACG
CCTGTTTTTCCCTTCATTTTGTGTCCGCACACACGGTCCTCAATGGCGAC
CGAACCAAGACCTCGAGGAGCATTGCCAATATGTCTCATGCCGGGCCAGG
CGGCGGCCAAGTGGGTGAAAACAAGCAAAGAAAAGGTTTGTGGGGTCCAA
ACTGGGATTTTACGTAGCAGTCGTAATAGCGTTGCTATCTTTTTTGCATG
TAACAAAACGTTTCCCATCGAGGTAAACACATGTTGTGGAATAGACCCAA
GATGGCGCACCGAAACTCTTGTTTGCCTGGTTTCACGCGCCTTACCAGTC
ACTACGTCTCATTTCCACGCTCCACTCGTGCAAAAAAATTAAGGACGAAA
AGCTGCACGCGGAAACTTTATTCGCCACCTTCGACAAGGGGGGCAGGCGA
CGTCCGGATGGGGAGGCCGACTACTCAGACTTCAACAAACCCTCAGGGAC
CTCGCCACCCCTCACGCAGAACGCCCTTTTGCGGCTACTAAAGACGGGGA
AAAAGACGGTTTTGGCGGATGGACTTGCCGTGGTGGACTCGCAGTGCTGG
TGGAGGTGGACCCCGACTGAGCAGAGGGACTTCCTTGAGAAGCAAATCCG
AGACCGAGGCCACTCCCCTCAAGACGCCTCCTTGACGCTCGCATCCCCCT
CTCAGCCCCTGGACCCTCCCTTTCTCTTCCATTTGCGATATCCCTTCCCT
CTCCATCGCCTCACCACCCGCCTTGCCTACCATCCCTCCGCTGGGCGTTT
TGCTCTTGCTGAGAAGCCCTGGCTCGAAGAAAACGAGCTCTACCGCTGGT
CTATTCCATTCTTCATCCGCTTCTTCCTGAAAGCAGCACGGCCTCTGTAC
GCCCCTATTTTTTGCTTCAAGTGGCTTGGCCTGCGTGCCATGATACTTTG
GCGCTCCTTCTCACTCTTCGTCCTCCCCTCGGTGCCCTACGTCGCCCTTT
TTACATTCCGCGCCATCTACATGCTCGCCGCCTGCGCCCTGGTCACTGTC
GCCTTGGATGAGTTGATGCATCCACTCCTAGAGTGGACATACAACATATT
TTATAAAGGCCATAGGCCGCTTCCTGACCTGTCTTACTACAATCTAGCGG
AGGCGTGGTCGAGGAAGGGGACTGAGGGGGCGGGAGGTTATACTTGGCGG
GATCGGTTGTGGACGTTTTGAATTAATATTGTACACAAAATGTAAATACT
TTGGGAATTTAAT

Coding sequence (CDS) from alignment at CM002461.1:737058..738720-

>rna3575 ID=rna3575|Name=rna3575|organism=Nannochloropsis gaditana|type=CDS|length=2298bp|location=Sequence derived from alignment at CM002461.1:737058..738720- (Nannochloropsis gaditana)
GACGAAAAGCTGCACGCGGAAACTTTATTCGCCACCTTCGACAAGGGGGG
CAGGCGACGTCCGGATGGGGAGGCCGACTACTCAGACTTCAACAAACCCT
CAGGGACCTCGCCACCCCTCACGCAGAACGCCCTTTTGCGGCTACTAAAG
ACGGGGAAAAAGACGGTTTTGGCGGATGGACTTGCCGTGGTGGACTCGCA
GTGCTGGTGGAGGTGGACCCCGACTGAGCAGAGGGACTTCCTTGAGAAGC
AAATCCGAGACCGAGGCCACTCCCCTCAAGACGCCTCCTTGACGCTCGCA
TCCCCCTCTCAGCCCCTGGACCCTCCCTTTCTCTTCCATTTGCGATATCC
CTTCCCTCTCCATCGCCTCACCACCCGCCTTGCCTACCATCCCTCCGCTG
GGCGTTTTGCTCTTGCTGAGAAGCCCTGGCTCGAAGAAAACGAGCTCTAC
CGCTGGTCTATTCCATTCTTCATCCGCTTCTTCCTGAAAGCAGCACGGCC
TCTGTACGCCCCTATTTTTTGCTTCAAGTGGCTTGGCCTGCGTGCCATGA
TACTTTGGCGCTCCTTCTCACTCTTCGTCCTCCCCTCGGTGCCCTACGTC
GCCCTTTTTACATTCCGCGCCATCTACATGCTCGCCGCCTGCGCCCTGGT
CACTGTCGCCTTGGATGAGTTGATGCATCCACTCCTAGAGTGGACATACA
ACATATTTTATAAAGGCCATAGGCCGCTTCCTGACCTGTCTTACTACAAT
CTAGCGGAGGCGTGGTCGAGGAAGGGGACTGAGGGGGCGGGAGGTTATAC
TTGGCGGGATCGGTTGTGGACGTTTTGAATGCATTTCCCGCGGGCATTAA
AGTCGATAAGGACGCGCTGCACGCAGTGTGTTCCGGCCTCACTTTTTTCT
TACATCCTGACATCCTCAGTTCCTCGAGCCGGAATGGGGCGGTGGGCGGG
TACAACAACTTTTTTATGGCACGCTGGTGCAAGGTGCTCCTTTATTATCC
TTTTTCTTCGAACGCCTGTTTTTCCCTTCATTTTGTGTCCGCACACACGG
TCCTCAATGGCGACCGAACCAAGACCTCGAGGAGCATTGCCAATATGTCT
CATGCCGGGCCAGGCGGCGGCCAAGTGGGTGAAAACAAGCAAAGAAAAGG
ACGAAAAGCTGCACGCGGAAACTTTATTCGCCACCTTCGACAAGGGGGGC
AGGCGACGTCCGGATGGGGAGGCCGACTACTCAGACTTCAACAAACCCTC
AGGGACCTCGCCACCCCTCACGCAGAACGCCCTTTTGCGGCTACTAAAGA
CGGGGAAAAAGACGGTTTTGGCGGATGGACTTGCCGTGGTGGACTCGCAG
TGCTGGTGGAGGTGGACCCCGACTGAGCAGAGGGACTTCCTTGAGAAGCA
AATCCGAGACCGAGGCCACTCCCCTCAAGACGCCTCCTTGACGCTCGCAT
CCCCCTCTCAGCCCCTGGACCCTCCCTTTCTCTTCCATTTGCGATATCCC
TTCCCTCTCCATCGCCTCACCACCCGCCTTGCCTACCATCCCTCCGCTGG
GCGTTTTGCTCTTGCTGAGAAGCCCTGGCTCGAAGAAAACGAGCTCTACC
GCTGGTCTATTCCATTCTTCATCCGCTTCTTCCTGAAAGCAGCACGGCCT
CTGTACGCCCCTATTTTTTGCTTCAAGTGGCTTGGCCTGCGTGCCATGAT
ACTTTGGCGCTCCTTCTCACTCTTCGTCCTCCCCTCGGTGCCCTACGTCG
CCCTTTTTACATTCCGCGCCATCTACATGCTCGCCGCCTGCGCCCTGGTC
ACTGTCGCCTTGGATGAGTTGATGCATCCACTCCTAGAGTGGACATACAA
CATATTTTATAAAGGCCATAGGCCGCTTCCTGACCTGTCTTACTACAATC
TAGCGGAGGCGTGGTCGAGGAAGGGGACTGAGGGGGCGGGAGGTTATACT
TGGCGGGATCGGTTGTGGACGTTTTGAATGCATTTCCCGCGGGCATTAAA
GTCGATAAGGACGCGCTGCACGCAGTGTGTTCCGGCCTCACTTTTTTCTT
ACATCCTGACATCCTCAGTTCCTCGAGCCGGAATGGGGCGGTGGGCGGGT
ACAACAACTTTTTTATGGCACGCTGGTGCAAGGTGCTCCTTTATTATCCT
TTTTCTTCGAACGCCTGTTTTTCCCTTCATTTTGTGTCCGCACACACGGT
CCTCAATGGCGACCGAACCAAGACCTCGAGGAGCATTGCCAATATGTCTC
ATGCCGGGCCAGGCGGCGGCCAAGTGGGTGAAAACAAGCAAAGAAAAG

Synonyms

Publications