rna3568, rna3568 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3568
Unique Name	rna3568
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2530
Alignment location	CM002461.1:720974..723155 +

Link to JBrowse

Properties


Property Name	Value
Product	carboxyl-terminal protease
Orig transcript id	gnl\|cribi\|Naga_100046g14.5125.mrna
Orig protein id	gnl\|cribi\|Naga_100046g14.5125
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:720974..723155 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100046g14	gene3437	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3568	rna3568-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27086.1	cds3559	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:720974..723155+
coding sequence from alignment at CM002461.1:720974..723155+

mRNA sequence

>rna3568 ID=rna3568|Name=rna3568|organism=Nannochloropsis gaditana|type=mRNA|length=2530bp
CTTAGGGTTGCGACTTGTGGACATATAGGATGCGCTGATTTAAGACACGA
AAGAAAGAAGAGTGGTCTCAGCAAGCACATCGAAAGCAGGCAGGGCCCGC
TCAACAGGCGCGCCACGACAAGGAAAGCGATAGAGCATGACTATGAGCTT
GACCACGCCGCAAAGATCTTCCCGAGGAAATAGTACCGGTAGCAGCGGCG
GTGGGAGCGGAACGAACGGAGGGAAGCGGGCTAAAATGGACTACAGCACC
TGTCATCCTTCTCCAGCGACCGGTTCAACCGGAGTATCAGCGGTGGCTCC
GTCATCGTCGCACATGTCGAAGAAGCGTGGCGGTGCACACAGTAATGGGG
GTCTGGTCAACGGCACAGCAGCGACGGGAACCGCTACCTCGGGAGGGGGG
GGAGGAGGGGGGCCCTTCCATCAGCTTCCTCGAACCTGCCGTCCGCCGCC
TCTGCTGGCGCCACTCCCGGTGGAATGGATAGCTCCGCCGGCAAGATGAC
GTCTCCTGTAAGCGTGTCCAAGGCACGGGCCTCTCCGAGCAGCCGCTACG
ACAGCTCTCTCGGGCTACTGACCAAGAAATTCGTGGAGCTGCTCCAAGGA
CAGCAGGCGCGCGGGGACTCCCTGGACCTCAACCAGGCCGCAGTGACGCT
GTCGGTGCAAAAGAGACGCATCTACGACATCACGAACGTCCTGGAAGGCA
TCGGGTTGATTGAAAAGAAGAGTAAGAACAACATTGCTTGGAGGGGCGCG
GCTGCGTCTGCCCTGAGCACCAGTGTGAGTCGCCACGGGGAAGGTAGCGT
GCATTCCGAGGACATGCGGCAATTAAAGCAGGAGATGGAGGATCTCAAAC
AGGAGGAGCGCGACGTGAAGGGCCACATCCAAAGCATGACCGCGCTGCTG
CAGCAGGAGGGCGAGCAGAACACAGGCCTCATGTACGTGACCCAGGAGGA
CCTGGGAAAGCTCCCCTGCTACGACGCCCAGACCGTCATCGCCATCCGGG
CCCCGCAAGGCACCACCCTGGAGGTGCCCGATCCGGACGAGGGGATGGCC
AACGGAGAGCGGAGGTATCAGATCCAGCTCGTGTCGAGCAACGGCCCGGT
GGACATTTACCTCGTGAACGCGCCAGAGCAAGGGGAGGGGGGCGAGGGCG
GGGGGGGGGCAGGGGGGGGGCAGGCGGAAGCTAGCCCTAGGGGGAGGTTG
GATAGGTCTCCAAATGCGGGGGTGACGGGGGAGGGTGGAAGCGGCAGGTC
GAAGCCGGCGGGGCACGACGAGCCGCAGCCGGCCTCCCAGGGCTCGTACG
ACCTGCACTCCCTCCCGGGCGCCCACTCGTTGCAGCCGCACGAGATGATG
GGTCTGAGCCACCACCACAATCAGCTGGGGGGAAACGGAGGCATCTTGGC
CTACAAGCCTTCGCCGGCGCCGTCCCCGTCCGTGGCTTCGGGGGGCATGA
GCGATCCTGTCTTCCAGTTCGGCATGACGGACGCGGAGGGTATATCAGAA
ATGTGGCTCACGGAGGAAAGTTAGCCGGTGATTGGAGGAGAGAGGCATTT
GGATCGCCTTGGGCTCGGGAGTGGCCGACGAAAGAAGTGCTGAATGGGAG
GGAAACGGTGCCGAGTGGGACTGAGAGGAGCCCTTGTATCCAAGTGCGGA
GGGATGAGGGAGAAGGGTGTGCGGAGGGACTGGGAAACCGACTGTGGGTG
GCGCCAGGACGCGGTGCCGAGTGGCGGATGAGGGGCGTCGAAGCGACGAA
GATGGAGAAATGCGCGGGAGCAAGCGCTTCAGGTACCCAGAGCAGCCAAG
GCGAGAGACTGACATGCGCACGTGCTCGCACGGCTGACACTAGTCGTGGT
GTGAGGGAGGAGCTTGGTCGGTAGGGGCGAGAGAGAAAGGGTGCGGTCGG
GGTGGGGGGTCGACGAGGCCGGAGAGGGAGGAGGAGGAGGAAGAGACAGA
AGATTTGTCGGTTTCGAGGACAAGATTTCCGAGACAGGAGATATGACTGC
GAGAAGAGAGAGAGAAGGGAGAAATTTGCGAATTTGACGAAGAAAGCGAA
CGAGAAGACGAAGAGAAAGTAGACAGGAGGGAAGAGTGTCAGAGGGGAAA
ACCAAGGGTGGGAATGACACATGAACAAGCACCCTCTCCTTCGTTGTCAG
CTCCAGTCAGAGGCAACGGAGAAAGAAGTGGTGCAGAGCAAGGAGGATAG
CAGAGCGCTCGAGGCGATGAGTGATTGATGAGACAACGTGTGGCACATAC
CTTTGCCCGAGGCCCTCCGCGGAGGATGCCAGTAAAAACTCACGCCAGGT
GGTGTCAAACTGTGTACATATATCATGAGACGGGATGGGAGGGAGCACTG
TAACACGAGACAGGAGAGAGGAGGCCGAGCTAGGGGATGGGGAAGGGAGT
TGAGATGGCAGATATGTCTTGCTTTCTGGACGGAGATAGACTTGAGTTCC
CCCCCCACCTGCGCCAAAATCAGCGTCAAACGTTAAAGGAAGCGACCCCC
GAAAAAGAAGAAATAGCACAGAGCATAAAC

protein sequence of rna3568

>rna3568-protein ID=rna3568-protein|Name=rna3568|organism=Nannochloropsis gaditana|type=polypeptide|length=545bp
MLFSHPTDSSDVCTHFPSAFRSCVLQTSSQLGGSALCLRRQPQTSLSIPR
MLLSTPNTAPAPSAAFLQTLQFSPQRNTHASHVPTSPTVHPLAAPLSPAA
FHLPSLNAVRQSPEHDSNASPFPIPRSSKRRKGPIRWQPLLTWLLLVIPA
LWSPPTPEQLAPLGLNSLGSTATVSQAAAGLTDEQQLVADVWKRVDKLFL
DRTFNGQDWFALRQAALKKPYKTTAQVYEGIKAMLEPLGDPYTRFLPPSQ
YDSLFGLATGSVAGVGVSLQIDPATQELTAAEVEKGSPAEAAGLRAGDKL
LYVDGQATTGLLVDDCANLLRGPAGTKVGVVARGKGGESKDVIITRQLIK
IQSVEALTANKGGKKVGVIRIRSFSQTTADTVAAELEKLEKEGISAVVID
LRGNPGGFLGGGIDTARLFLPAYEKIVSVVGKTGIVEEYQTTDEGRETTK
PLFVVVDKRTASASEVLSAALKENNRAKLVGEKTFGKGVVQTIEQVGQNA
GVSVTIAAYSTPLGNNINKKGIDVDIPSTCEATDKAVQCLPEGVL

mRNA from alignment at CM002461.1:720974..723155+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3568 ID=rna3568|Name=rna3568|organism=Nannochloropsis gaditana|type=mRNA|length=2182bp|location=Sequence derived from alignment at CM002461.1:720974..723155+ (Nannochloropsis gaditana)
GAGTATTTAAATGCTCTTCTCTCATCCAACAGATTCGTCTGACGTATGTA
CTCACTTCCCCTCGGCGTTCCGTTCCTGTGTCCTGCAGACATCGTCTCAA
CTCGGCGGGTCAGCTCTCTGTCTTCGCCGACAGCCGCAGACGAGCCTGTC
TATACCGAGGATGCTGCTGAGCACTCCCAACACGGCCCCTGCACCATCTG
CAGCTTTCCTCCAGACGCTTCAATTTAGCCCACAAAGAAATACTCACGCT
AGCCATGTACCTACTAGCCCCACCGTTCACCCTCTGGCAGCGCCCTTATC
ACCTGcggccttccacctcccctccctgaaCGCAGTTCGACAGTCACCAG
AGCATGACTCAAATGCTAGTCCATTTCCGATACCACGAAGCtccaaaaga
agaaaagggccTATTCGATGGCAACCGCTCTTAACATGGCTGCTGTTGGT
CATTCCGGCGCTATGGAGCCCACCAACCCCTGAACAACTTGCCCCTCTAG
GCCTGAATTCTCTCGGTAGCACCGCTACAGTCAGCCAAGCCGCGGCGGGG
TTGACGGACGAACAGCAACTAGTGGCTGACGTCTGGAAGCGCGTGGACAA
ACTTTTCCTGGATCGTACGTTCAACGGCCAAGACTGGTTCGCATTGCGAC
AAGCCGCTCTGAAGAAGCCCTACAAGACCACAGCCCAGGTTTACGAGGGC
ATTAAGGCCATGCTGGAGCCGCTGGGGGATCCTTACactcgtttcctccc
tccctcacagtACGACTCCCTTTTTGGTCTTGCCACGGGCAGTGTGGCAG
GTGTGGGAGTAAGCTTGCAGATCGACCCAGCGACCCAGGAGCTGACGGCa
gccgaggtggagaaaggctCCCCGGCGGAGGCCGCGGGGCTGAGAGCAGG
CGACAAGCTGCTGTATGTGGACGGACAGGCCACTACTGGATTACTGGTGG
ACGACTGTGCGAACCTGTTGCGGGGCCCGGCGGGCACGAAGGTGGGAGTG
GTCGCaaggggcaagggcggggagtCCAAGGACGTCATCATTACCCGTCA
ATTGATCAAAATCCAGAGCGTGGAGGCATTGACGGCTAACAAGGGGGGCA
AAAAGGTCGGTGTTATTCGAATCCGATCCTTTTCGCAAACGACGGCCGAC
ACGGTGGCCGCGGAGCTGGAAaagctggagaaggaagggatcaGTGCAGT
AGTAATCGACCTGAGGGGGAATCCCGGTGGATTTCTGGGCGGAGGCATCG
ACACCGCCCGGCTTTTCCTGCCTGCCTACGAGAAAATTGTGTcggtggtg
gggaagacCGGCATTGTGGAGGAGTACCAGACCACGGATGAAGGACGCGA
GACGACCAAGCCTTTGTTCGTCGTGGTGGACAAGCGGacggccagcgcct
cggAAGTGCTCTCGGCCGCCTTGAAAGAGAACAATCGAGCCAAACTGGTG
GGCGAAAAGACGTTCGGAAAGGGTGTGGTGCAGACGATCGAGCAAGTGGG
ACAGAACGCGGGGGTATCGGTGACCATCGCAGCCTACTCCACTCCCCTTG
GGAACAACATCAACAAGAAGGGCATCGACGTGGacatcccctccacctgc
gAGGCCACGGACAAGGCCGTCCAGTGTCTACCCGAAGGAGTTTTATAGTG
GCTTGATACCGATGCAACCTTAAAGTCAGAAACAATCTCTAGGTTTCACG
CGATTTCAACAAAGTAAGGAATGTCAGTTTACTGTCTACATATTGTTGTA
CGGGAAAGGGTGTCAGGATTTCAAGACTGACAGGCACAATGACTTGCATT
ATTATTGATAAATTAGTATGGATAGTATGCGCCTAAAGCTTGACCATCAT
CTATGTTTTTTTTCGCCGTGCGTGACGCTACACAAGTGTTACCTGCTGCA
CGTGACGATGACGCATTTGAGTCACGCTCATATCGTGCCACGAGGCTTTT
CAAAATGAAAAAGGCGATTTTGTGAAGCGCTTGTGTGTAGATACGAACGA
TAATTGCTGGAGAAAGAGCCAATTGAAGTACCCGTAAAGCATGCTCGTCT
CCAAAGCGCAGATGGCGTCGAAAATAGGTGCAGGGTCCCCAAGGTTCACA
ATCCTATGTTGTAGAGTACCTTCAGCTGTCCGTAAAACGCTTCAGGTATG
CCTATCAACCAATATCAGAAAGTGTCCGATTT

Coding sequence (CDS) from alignment at CM002461.1:720974..723155+

>rna3568 ID=rna3568|Name=rna3568|organism=Nannochloropsis gaditana|type=CDS|length=1638bp|location=Sequence derived from alignment at CM002461.1:720974..723155+ (Nannochloropsis gaditana)
ATGCTCTTCTCTCATCCAACAGATTCGTCTGACGTATGTACTCACTTCCC
CTCGGCGTTCCGTTCCTGTGTCCTGCAGACATCGTCTCAACTCGGCGGGT
CAGCTCTCTGTCTTCGCCGACAGCCGCAGACGAGCCTGTCTATACCGAGG
ATGCTGCTGAGCACTCCCAACACGGCCCCTGCACCATCTGCAGCTTTCCT
CCAGACGCTTCAATTTAGCCCACAAAGAAATACTCACGCTAGCCATGTAC
CTACTAGCCCCACCGTTCACCCTCTGGCAGCGCCCTTATCACCTGcggcc
ttccacctcccctccctgaaCGCAGTTCGACAGTCACCAGAGCATGACTC
AAATGCTAGTCCATTTCCGATACCACGAAGCtccaaaagaagaaaagggc
cTATTCGATGGCAACCGCTCTTAACATGGCTGCTGTTGGTCATTCCGGCG
CTATGGAGCCCACCAACCCCTGAACAACTTGCCCCTCTAGGCCTGAATTC
TCTCGGTAGCACCGCTACAGTCAGCCAAGCCGCGGCGGGGTTGACGGACG
AACAGCAACTAGTGGCTGACGTCTGGAAGCGCGTGGACAAACTTTTCCTG
GATCGTACGTTCAACGGCCAAGACTGGTTCGCATTGCGACAAGCCGCTCT
GAAGAAGCCCTACAAGACCACAGCCCAGGTTTACGAGGGCATTAAGGCCA
TGCTGGAGCCGCTGGGGGATCCTTACactcgtttcctccctccctcacag
tACGACTCCCTTTTTGGTCTTGCCACGGGCAGTGTGGCAGGTGTGGGAGT
AAGCTTGCAGATCGACCCAGCGACCCAGGAGCTGACGGCagccgaggtgg
agaaaggctCCCCGGCGGAGGCCGCGGGGCTGAGAGCAGGCGACAAGCTG
CTGTATGTGGACGGACAGGCCACTACTGGATTACTGGTGGACGACTGTGC
GAACCTGTTGCGGGGCCCGGCGGGCACGAAGGTGGGAGTGGTCGCaaggg
gcaagggcggggagtCCAAGGACGTCATCATTACCCGTCAATTGATCAAA
ATCCAGAGCGTGGAGGCATTGACGGCTAACAAGGGGGGCAAAAAGGTCGG
TGTTATTCGAATCCGATCCTTTTCGCAAACGACGGCCGACACGGTGGCCG
CGGAGCTGGAAaagctggagaaggaagggatcaGTGCAGTAGTAATCGAC
CTGAGGGGGAATCCCGGTGGATTTCTGGGCGGAGGCATCGACACCGCCCG
GCTTTTCCTGCCTGCCTACGAGAAAATTGTGTcggtggtggggaagacCG
GCATTGTGGAGGAGTACCAGACCACGGATGAAGGACGCGAGACGACCAAG
CCTTTGTTCGTCGTGGTGGACAAGCGGacggccagcgcctcggAAGTGCT
CTCGGCCGCCTTGAAAGAGAACAATCGAGCCAAACTGGTGGGCGAAAAGA
CGTTCGGAAAGGGTGTGGTGCAGACGATCGAGCAAGTGGGACAGAACGCG
GGGGTATCGGTGACCATCGCAGCCTACTCCACTCCCCTTGGGAACAACAT
CAACAAGAAGGGCATCGACGTGGacatcccctccacctgcgAGGCCACGG
ACAAGGCCGTCCAGTGTCTACCCGAAGGAGTTTTATAG

Synonyms

Publications